Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_017571155.1/fasta/hub_GCA_017571155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              129
Total size of examined sequences (bp):           4941647
Total number of identified SSRs:                 31
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	4
5	12
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
AT	-	-	-							1													1
CA	-	-	-	1																			1
TC	-	-	-	1			1																2
TAT	-	-				1																	1
TGC	-	-	1																				1
TGG	-	-	1																				1
TTA	-	-	1																				1
AAAAT	2																						2
AAATA	1																						1
AGAAA	1																						1
ATTAA	1																						1
ATTTA		1																					1
GTAGG	1																						1
GTTTT	1																						1
TCCTG		2																					2
TTATT	1																						1
TTGTG	1																						1
AATCAT							1																1
AATGGC				1																			1
AGAAAA	1																						1
ATTCGT	1																						1
ATTTAT															1								1
ATTTCA	1																						1
CTTCAA	1																						1
TGAATG	1																						1
TGCAGC	1																						1
TTGGTG																						1	1
TTTATT	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
AC/GT	-	-	-	1																			1
AG/CT	-	-	-	1			1																2
AT/AT	-	-	-							1													1
AAT/ATT	-	-	1			1																	2
ACC/GGT	-	-	1																				1
AGC/CTG	-	-	1																				1
AAAAC/GTTTT	1																						1
AAAAG/CTTTT	1																						1
AAAAT/ATTTT	4																						4
AAATT/AATTT	1	1																					2
AACAC/GTGTT	1																						1
ACAGG/CCTGT		2																					2
ACCCT/AGGGT	1																						1
AAAAAG/CTTTTT	1																						1
AAAAAT/ATTTTT	1																						1
AAATAT/ATATTT															1								1
AAATTG/AATTTC	1																						1
AACACC/GGTGTT																						1	1
AACTTC/AAGTTG	1																						1
AATACG/ATTCGT	1																						1
AATCAT/ATGATT							1																1
AATGGC/ATTGCC				1																			1
AATGTG/ACATTC	1																						1
AGCTGC/AGCTGC	1																						1
