Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_016735845.1/fasta/hub_GCA_016735845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2899
Total size of examined sequences (bp):           3903448
Total number of identified SSRs:                 11
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
3	1
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
TCA	-	-	1																						1
AAAGA	1																								1
AATCA	1																								1
ATAAA	1																								1
GTTTG	1																								1
TTATT	1																								1
GAAAAA	1																								1
GGTTTT			1																						1
TAGGTG	1																								1
TGGTGT	1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
ATC/ATG	-	-	1																						1
AAAAG/CTTTT	1																								1
AAAAT/ATTTT	2																								2
AAACC/GGTTT	1																								1
AAATC/ATTTG	1																								1
AAAAAG/CTTTTT	1																								1
AAAACC/GGTTTT			1																						1
AACACC/GGTGTT	1																								1
ACACCT/AGGTGT	1																								1
