Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_015234435.1/fasta/hub_GCA_015234435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1151
Total size of examined sequences (bp):           4758915
Total number of identified SSRs:                 46
Number of SSR containing sequences:              38
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	3
5	13
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1	1			2
GC	-	-	-	5	2			7
CCG	-	-	1					1
GCT	-	-	1					1
GTT	-	-				1		1
CAGCG	1							1
CCAAG			1					1
CCGCG	1							1
CGCGA		1						1
CGGGA	1							1
CTGGC	1							1
GCCAA	1							1
GCGCC	1							1
GCGCT	1							1
GGCAC		1						1
GGCGC	1							1
GGGTG	1							1
TTGCC	1							1
AACGCC	1							1
AACGGG		1						1
AGAGCC							1	1
AGCGGT	1							1
CAAGTT	1							1
CCTTGG	1							1
CGAACC							1	1
CGAGGC	1							1
CGGTGG	1							1
CTGGTG	1							1
CTTCGG	1							1
GAGCTG	1							1
GCACCA		1						1
GCACCG		1						1
GGCACA	1							1
GGCCTG	1							1
GGTGCC	1							1
TGCCAT	1							1
TGCCGG	1							1
TGCTGG	1							1
TGGCAA	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	6	3			9
AAC/GTT	-	-				1		1
AGC/CTG	-	-	1					1
CCG/CGG	-	-	1					1
AAGCC/CTTGG	1		1					2
AAGGC/CCTTG	1							1
ACCCC/GGGGT	1							1
ACGCG/CGCGT		1						1
ACGGC/CCGTG		1						1
ACGGG/CCCGT	1							1
AGCGC/CGCTG	2							2
AGGCC/CCTGG	1							1
CCGCG/CGCGG	3							3
AACCCG/CGGGTT							1	1
AACGCC/CGTTGG	1							1
AACGGG/CCCGTT		1						1
AACTTG/AAGTTC	1							1
AAGCCG/CGGCTT	1							1
AAGGCC/CCTTGG	1							1
AATGGC/ATTGCC	2							2
ACAGGC/CCTGTG	1							1
ACCAGC/CTGGTG	2	1						3
ACCGCC/CGGTGG	1							1
ACCGCT/AGCGGT	1							1
ACCGGC/CCGGTG	2	1						3
AGAGCC/CTCTGG							1	1
AGCTCC/AGCTGG	1							1
AGGCCC/CCTGGG	1							1
AGGCCG/CCTCGG	1							1
