Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_014884835.1/fasta/hub_GCA_014884835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              163
Total size of examined sequences (bp):           8278380
Total number of identified SSRs:                 471
Number of SSR containing sequences:              48
Number of sequences containing more than 1 SSR:  37
Number of SSRs present in compound formation:    39


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	99
3	42
4	30
5	169
6	131

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC	-	-	-	1							1
AT	-	-	-	16	13	6	1				36
CA	-	-	-	1							1
GT	-	-	-			1					1
TA	-	-	-	26	19	6	4	2		1	58
TC	-	-	-	1							1
TG	-	-	-	1							1
AAT	-	-	6	2							8
AGA	-	-	1								1
AGG	-	-	2								2
ATA	-	-	1	1							2
ATT	-	-	2								2
GAA	-	-	4								4
GAG	-	-	1								1
GTA	-	-	1								1
TAA	-	-	4								4
TAG	-	-	1								1
TAT	-	-	7	1							8
TCA	-	-	1								1
TCT	-	-	1								1
TTA	-	-	4		1						5
TTC	-	-		1							1
AAAT	-	2									2
AATA	-		2								2
AATT	-	4									4
ATAA	-	2									2
ATTA	-	4									4
ATTT	-	4									4
TAAA	-	2									2
TAAT	-	1									1
TATT	-	2									2
TGTT	-	1									1
TTAA	-	2									2
TTAT	-	1									1
TTTA	-	3									3
AAAAG	1										1
AAAAT	11	1									12
AAATA	4										4
AAATT	2										2
AACAT	1										1
AAGAA	1										1
AATAA	4										4
AATAT	5										5
AATTC	1										1
ACACA	1										1
ACATA	1										1
ACTAT	1										1
ACTGT	1										1
AGTAT	2	1									3
ATAAA	5										5
ATAAT	2										2
ATACT	5										5
ATAGT	8										8
ATATA	1										1
ATATT	1										1
ATCAA	1										1
ATCAT	1										1
ATGTT		1									1
ATTAA	3										3
ATTAT	2	1									3
ATTTA	3										3
ATTTT	3										3
CAAAA	1										1
CATAC	1										1
CTAAA	1										1
GAGTG	1										1
GATTA	1										1
GTATA	5		1								6
TAAAA	2										2
TAAAT	4										4
TAAGA	2										2
TAATA	2										2
TAATT	1	1									2
TACTA	6										6
TAGTA	6										6
TATAC	6										6
TATAG	10										10
TATAT	6										6
TATGG	1										1
TATGT	2										2
TATTC	1										1
TATTT	2										2
TTAAT	3										3
TTAGA	1										1
TTATA	2	1									3
TTATT	5	1									6
TTGGT	1										1
TTTAA	4										4
TTTAT	2	1									3
TTTTA	10										10
AAAAAT	1										1
AAACCG	1										1
AAATAT	1										1
AAATTA	1										1
AACACT	1										1
AACCTT	1										1
AAGGAA	1										1
AATAAA	1										1
AATACT		1									1
AATAGC	1										1
AATAGT	2				1						3
AATATA	1										1
AATTTT	1										1
ACCTCA	1										1
ACTAAG	1										1
AGAGAA	2										2
AGAGAT	1										1
AGAGGG	1										1
AGATCT			1								1
AGATGA		1									1
AGGGAG	5										5
AGTAGG	1										1
AGTCCT	1										1
ATAAAA	1										1
ATAAAG	1										1
ATAAAT	1										1
ATAACA	1										1
ATAAGT	1										1
ATACTA	1										1
ATAGCT	1										1
ATAGTA					1						1
ATAGTG				1							1
ATATAA	2										2
ATATTT				1							1
ATCAGA	1										1
ATCCCA	1										1
ATTGGA				1							1
ATTTTC	1										1
CAAACT	1										1
CAACCA	2										2
CAACTC	1										1
CAATAA	1										1
CACTTC	2			1							3
CAGTAA	1										1
CATCAG	1										1
CATGTT	1										1
CCACAA	1										1
CCTCAG		1									1
CTCAAC	2										2
CTCAGC	1										1
CTCCCT	3										3
GAACCT	1										1
GAAGTA	1										1
GACCTT	1										1
GATAAT	1										1
GGAATG		1									1
GGAGAA	1										1
GGCTCA	1										1
GGTGGA	1										1
GGTTGA	2										2
GGTTGT	3										3
GTATTG			1								1
GTGTTA	1										1
TAAAAA	4										4
TAAATA	1										1
TAAATT	1										1
TAACAC	1										1
TAATAG	1	1									2
TAATTT	1										1
TACTAT	1										1
TAGTAA	1										1
TATACA	1										1
TATATC	1										1
TATGTA		1									1
TATTAA	1										1
TATTAC	2			1							3
TATTGT							1				1
TATTTA	1										1
TCAAAT	1										1
TCAACC	1										1
TCATCC	1										1
TCCATC	1										1
TCCCTC	1										1
TCCGCC	1										1
TCTGAG	1										1
TGAAAA				1							1
TGAACC		1									1
TGAAGA	1										1
TGAGAG	1										1
TGCAGT	1										1
TGGGTG	1										1
TGGTTG	1										1
TGTGTA	1										1
TGTTAG		1									1
TTAAAA	1										1
TTATAT	1										1
TTATCT	1										1
TTATTG	1										1
TTCAGA	1										1
TTCAGG	1	1									2
TTGAGG		1									1
TTTAAA	1										1
TTTAAT	1										1
TTTATT	3										3
TTTTAA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC/GT	-	-	-	3		1					4
AG/CT	-	-	-	1							1
AT/AT	-	-	-	42	32	12	5	2		1	94
AAG/CTT	-	-	6	1							7
AAT/ATT	-	-	24	4	1						29
ACT/AGT	-	-	2								2
AGG/CCT	-	-	3								3
ATC/ATG	-	-	1								1
AAAC/GTTT	-	1									1
AAAT/ATTT	-	16	2								18
AATT/AATT	-	11									11
AAAAC/GTTTT	1										1
AAAAG/CTTTT	2										2
AAAAT/ATTTT	48	3									51
AAACC/GGTTT	1										1
AAACT/AGTTT	1										1
AAATC/ATTTG	1										1
AAATT/AATTT	20	1									21
AACAC/GTGTT	1										1
AACAT/ATGTT	4	1									5
AAGAT/ATCTT	2										2
AATAG/ATTCT	1										1
AATAT/ATATT	21	2									23
AATCT/AGATT	2										2
AATTC/AATTG	1										1
ACAGT/ACTGT	1										1
ACCAT/ATGGT	2										2
ACTAT/AGTAT	49	1	1								51
ACTCC/AGTGG	1										1
ATATC/ATATG	1										1
AAAAAT/ATTTTT	10										10
AAAAGG/CCTTTT	1										1
AAAATG/ATTTTC	1			1							2
AAAATT/AATTTT	6										6
AAACCG/CGGTTT	1										1
AAACTC/AGTTTG	1										1
AAAGAG/CTCTTT	2										2
AAAGAT/ATCTTT	2										2
AAATAT/ATATTT	8			1							9
AAATTC/AATTTG	1										1
AAATTT/AAATTT	2										2
AACAAT/ATTGTT	3						1				4
AACACT/AGTGTT	3	1									4
AACAGT/ACTGTT	1										1
AACATG/ATGTTC	1										1
AACCAC/GGTTGT	7										7
AACCTC/AGGTTG	6	1									7
AACCTG/AGGTTC	2	2									4
AACCTT/AAGGTT	1										1
AACTCC/AGTTGG	1										1
AACTGC/AGTTGC	1										1
AAGACT/AGTCTT	1										1
AAGATG/ATCTTC	1	1									2
AAGGAG/CCTTCT	1										1
AAGGTC/ACCTTG	1										1
AAGTAG/ACTTCT	1										1
AAGTAT/ACTTAT	1										1
AAGTGG/ACTTCC	2			1							3
AATACC/ATTGGT			1								1
AATACT/AGTATT	1	1									2
AATAGC/ATTGCT	1										1
AATAGT/ACTATT	7	1		1	2						11
AATATT/AATATT	1										1
AATCAG/ATTCTG	1										1
AATCCC/ATTGGG	1										1
AATCTG/AGATTC	1										1
AATGAT/ATCATT	1										1
AATGGG/ATTCCC		1									1
AATTCC/AATTGG				1							1
ACACAT/ATGTGT	1										1
ACACCC/GGGTGT	1										1
ACATAT/ATATGT	1	1									2
ACCTCC/AGGTGG	1										1
ACTAGG/AGTCCT	1										1
ACTATC/AGTGAT				1							1
ACTCAG/AGTCTG	1										1
ACTCCT/AGGAGT	1										1
ACTCTC/AGAGTG	1										1
AGAGAT/ATCTCT	1										1
AGAGGG/CCCTCT	10										10
AGATAT/ATATCT	1										1
AGATCT/AGATCT			1								1
AGATGG/ATCTCC	1										1
AGCATC/ATGCTG	1										1
AGCCTC/AGGCTG	1	1									2
AGCCTG/AGGCTC	1										1
AGCTAT/AGCTAT	1										1
AGGATG/ATCCTC	1										1
AGGCGG/CCGCCT	1										1
