Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_014884785.1/fasta/hub_GCA_014884785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              197
Total size of examined sequences (bp):           8249319
Total number of identified SSRs:                 505
Number of SSR containing sequences:              43
Number of sequences containing more than 1 SSR:  24
Number of SSRs present in compound formation:    44


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	119
3	40
4	35
5	191
6	120

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC	-	-	-			1							1
AT	-	-	-	27	12	8	2					1	50
CA	-	-	-	1									1
TA	-	-	-	28	16	9	10	3					66
TG	-	-	-	1									1
AAT	-	-	5	1									6
ACT	-	-	1										1
ATA	-	-	4										4
ATC	-	-	1										1
ATT	-	-	1	1									2
GAA	-	-	2										2
GAT	-	-	1										1
GTA	-	-	1										1
TAA	-	-	2										2
TAT	-	-	10										10
TCC	-	-	2										2
TCT	-	-	3										3
TTA	-	-	3		1								4
TTC	-	-	1										1
AAAT	-	1											1
AATA	-	2											2
AATT	-	3											3
ATAA	-	5											5
ATTA	-	5											5
ATTT	-	5	1										6
CTAA	-	1											1
TAAA	-	3											3
TAAT	-	2											2
TGTT	-	1											1
TTAA	-	2	1										3
TTAT	-	1											1
TTTA	-	1	1										2
AAAAG	1												1
AAAAT	8												8
AAATA	7												7
AAATT	1												1
AACAT	1												1
AAGAA	1												1
AATAA	5	2											7
AATAG	1												1
AATAT	5												5
AATTA	3												3
AATTC	1												1
AATTT	3												3
ACACA	1												1
ACCAA	1												1
ACTAT	5												5
ACTGT	1												1
AGTAT	2												2
ATAAA	6												6
ATAAT	2												2
ATACT	7												7
ATAGT	3												3
ATATA	12												12
ATATT	1												1
ATGTA	1												1
ATTAA	7												7
ATTAC	4												4
ATTAG	1												1
ATTAT	3												3
ATTTA	2												2
ATTTT	8												8
CAAAA		1											1
CTAAA	1												1
CTATA	1	1											2
GAGTG	1												1
GATTA	1												1
GGTAT	1												1
GTATA	2												2
TAAAA	5												5
TAAAT	2												2
TAATA	2												2
TACTA	11	1											12
TAGTA	3												3
TATAC	9	1											10
TATAG	8												8
TATAT	3												3
TATGG	1												1
TATGT	1												1
TATTT	2												2
TTAAA	2												2
TTAGA	1												1
TTATA	1	1											2
TTATC	2												2
TTATG	1												1
TTATT	6	1											7
TTTAA	2												2
TTTAT	3	1											4
TTTTA	4	1											5
TTTTG	1												1
AAAAAT	1												1
AAACCG	1												1
AAACTC	1												1
AAATAT	1												1
AAATTA	1												1
AAATTT	1												1
AACACT	1												1
AACCTG	1												1
AACCTT	1												1
AACTTT	1												1
AAGGAA	1												1
AATAAA	1												1
AATACT		1											1
AATAGT	1												1
AATATA	2												2
AATGAA		1											1
AATTTT	1												1
ACAACC			1										1
ACACTA	1												1
ACCAGT	1												1
ACCTCA	1												1
ACTATC			1										1
AGAGAA	1												1
AGAGAT	1												1
AGAGGG	2												2
AGATAA	1												1
AGATAT	1												1
AGATCT		1											1
AGGACT	1												1
AGGGAG	6												6
AGGTTG	1												1
AGTAGG	1												1
AGTTTG	1												1
ATAAAG	1												1
ATACAC	1												1
ATACTA	1												1
ATAGTA	1	1											2
ATATAA	1												1
ATATTT			1										1
ATGAGG	1												1
ATTGGT		1											1
ATTTGT			1										1
ATTTTC	1												1
ATTTTT	2												2
CAACCA			1										1
CAACCT	1												1
CAACTC	1												1
CATCAG	1												1
CATGAA	1												1
CATTAT	1												1
CCAATT				1									1
CCACAA		1											1
CCACCG	1												1
CCATTC		1											1
CTAACA		1											1
CTATAT		1											1
CTCAGC	1												1
CTCCCT	1												1
GAACCT	1												1
GAAGTA	1												1
GACCTT	1												1
GAGATG	1												1
GAGGAT			1										1
GATTGG	1												1
GATTGT	1												1
GCTGAG			1										1
GGCGGA	1												1
GGCTCA	1												1
GGTGGA	1												1
GGTTGA	1												1
GGTTGT	1												1
GTAATA	1												1
GTATTA	1												1
GTTATT	1												1
TAACAA			1										1
TAACAC	1												1
TAATTT	1												1
TACCAC	1												1
TACTAT		1											1
TAGTAA	1												1
TAGTAT	2												2
TAGTGA	1												1
TATACA	2	1											3
TATATT	1												1
TATCTG	1												1
TCACTC	1												1
TCGTCA	1												1
TCTCAC	1												1
TCTGAG	1												1
TCTTAG	1												1
TGAAGA	1												1
TTAAAA	1												1
TTAATT	1												1
TTACTC	1												1
TTATAT	1												1
TTATTG	1												1
TTCAGG			1										1
TTCTCC	1												1
TTGAAT	1												1
TTGTGG	1												1
TTTAAT	1												1
TTTATT	3												3
TTTTAA	1												1
TTTTAT	1												1
TTTTTA	1	1											2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-	2		1							3
AT/AT	-	-	-	55	28	17	12	3				1	116
AAG/CTT	-	-	6										6
AAT/ATT	-	-	25	2	1								28
ACT/AGT	-	-	2										2
AGG/CCT	-	-	2										2
ATC/ATG	-	-	2										2
AAAC/GTTT	-	1											1
AAAT/ATTT	-	18	2										20
AACT/AGTT	-	1											1
AATT/AATT	-	12	1										13
AAAAC/GTTTT	1	1											2
AAAAG/CTTTT	2												2
AAAAT/ATTTT	54	5											59
AAACC/GGTTT	1												1
AAACT/AGTTT	1												1
AAATT/AATTT	22												22
AACAC/GTGTT	1												1
AACAT/ATGTT	3												3
AAGAT/ATCTT	2												2
AATAG/ATTCT	1												1
AATAT/ATATT	29	1											30
AATCT/AGATT	3												3
AATGT/ACATT	5												5
AATTC/AATTG	1												1
ACAGT/ACTGT	1												1
ACCAT/ATGGT	2												2
ACTAT/AGTAT	51	3											54
ACTCC/AGTGG	1												1
AAAAAT/ATTTTT	9	1											10
AAAAGG/CCTTTT	1												1
AAAATG/ATTTTC	1	1											2
AAAATT/AATTTT	7												7
AAACCG/CGGTTT	1												1
AAACTC/AGTTTG	2												2
AAAGAG/CTCTTT	1												1
AAAGAT/ATCTTT	2												2
AAAGTT/AACTTT	1												1
AAATAC/ATTTGT			1										1
AAATAT/ATATTT	6		1										7
AAATTC/AATTTG	1												1
AAATTT/AAATTT	1												1
AACAAT/ATTGTT	2		1										3
AACACT/AGTGTT	3	1											4
AACATG/ATGTTC	1												1
AACCAC/GGTTGT	2	1	2										5
AACCTC/AGGTTG	4												4
AACCTG/AGGTTC	2		1										3
AACCTT/AAGGTT	1												1
AACTCC/AGTTGG	1												1
AAGACT/AGTCTT	1												1
AAGAGT/ACTCTT	1												1
AAGATG/ATCTTC	1												1
AAGGAG/CCTTCT	1												1
AAGGTC/ACCTTG	1												1
AAGTAG/ACTTCT	1												1
AATACC/ATTGGT		1											1
AATACT/AGTATT	4	1											5
AATAGT/ACTATT	4	2											6
AATCAC/ATTGTG	1												1
AATCCC/ATTGGG	1												1
AATGAT/ATCATT	1												1
AATGGG/ATTCCC		1											1
AATTCC/AATTGG				1									1
ACACAT/ATGTGT	1												1
ACAGAT/ATCTGT	1												1
ACATAT/ATATGT	2	1											3
ACCACT/AGTGGT	1												1
ACCAGT/ACTGGT	1												1
ACCGCC/CGGTGG	1												1
ACCTCC/AGGTGG	1												1
ACGATG/ATCGTC	1												1
ACTAGG/AGTCCT	1												1
ACTATC/AGTGAT	1		1										2
ACTCAG/AGTCTG	1												1
ACTCCT/AGGAGT	1												1
ACTCTC/AGAGTG	2												2
AGAGAT/ATCTCT	1												1
AGAGGG/CCCTCT	9												9
AGATAT/ATATCT	1	1											2
AGATCT/AGATCT		1											1
AGATGG/ATCTCC	1												1
AGCATC/ATGCTG	1												1
AGCCTC/AGGCTG	1		1										2
AGCCTG/AGGCTC	1												1
AGGATG/ATCCTC	1		1										2
AGGCGG/CCGCCT	1												1
