Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-10/megassr/results/hub_GCA_014493745.1/fasta/hub_GCA_014493745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              678
Total size of examined sequences (bp):           3185421
Total number of identified SSRs:                 17
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	3
3	2
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AT	-	-	-	1																	1
TA	-	-	-		1																1
TG	-	-	-	1																	1
ATG	-	-	1																		1
TCC	-	-	1																		1
CTAGG	1																				1
TAATT	1																				1
TACTC		1																			1
TCTTG	1																				1
TTTTC	1																				1
AAAGCA	1																				1
GATAAG	1																				1
GCCGTA	1																				1
TCGCTT	1																				1
TTCTTT	1																				1
TTTCTG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AC/GT	-	-	-	1																	1
AT/AT	-	-	-	1	1																2
AGG/CCT	-	-	1																		1
ATC/ATG	-	-	1																		1
AAAAG/CTTTT	1																				1
AAATT/AATTT	1																				1
AAGAC/CTTGT	1																				1
ACTCT/AGAGT		1																			1
AGCCT/AGGCT	1																				1
AAAAAG/CTTTTT	1																				1
AAAAGC/CTTTTG	1																				1
AAACAG/CTGTTT	1																				1
AAAGCG/CGCTTT	1																				1
AAGGAT/ATCCTT	1																				1
ACGGCT/AGCCGT	1																				1
