Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-9/megassr/results/hub_GCA_014493705.1/fasta/hub_GCA_014493705.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              616
Total size of examined sequences (bp):           4273788
Total number of identified SSRs:                 31
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	4
4	1
5	12
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
TA	-	-	-	3	1														4
ATG	-	-	2																2
GGT	-	-	1																1
TGC	-	-	1																1
TTTC	-	1																	1
AAGAA	1																		1
ACGAA	1																		1
CTTTT	1																		1
GAAAA	3																		3
GAGGG	1																		1
TCTTT	1																		1
TTCTA	1																		1
TTTTA	1																		1
TTTTC	2																		2
AAAAGA	1																		1
ACGCTC	1																		1
CAAATT	1																		1
GAAGCA	1																		1
GATGCC	1																		1
GCTGAT	1																		1
GTTGGT	1																		1
TTTTGC			1																1
TTTTTC	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT/AT	-	-	-	3	1														4
ACC/GGT	-	-	1																1
AGC/CTG	-	-	1																1
ATC/ATG	-	-	2																2
AAAG/CTTT	-	1																	1
AAAAG/CTTTT	8																		8
AAAAT/ATTTT	1																		1
AAACG/CGTTT	1																		1
AATAG/ATTCT	1																		1
AGGGG/CCCCT	1																		1
AAAAAG/CTTTTT	2																		2
AAAAGC/CTTTTG			1																1
AAATTC/AATTTG	1																		1
AACACC/GGTGTT	1																		1
AAGCAG/CTGCTT	1																		1
ACGCTC/AGCGTG	1																		1
AGCATC/ATGCTG	1																		1
ATCGGC/ATGCCG	1																		1
