Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_013365335.1/fasta/hub_GCA_013365335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13165
Total size of examined sequences (bp):           77701753
Total number of identified SSRs:                 15324
Number of SSR containing sequences:              4377
Number of sequences containing more than 1 SSR:  2664
Number of SSRs present in compound formation:    2463


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	878
2	5314
3	3904
4	2337
5	2007
6	884

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	98	78	49	33	30	21	25	12	12	7	10	3	4	8	3	3	1	2	2	2				1									3		1											1																											409
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	3	1	1	1	2				1	1	1	3	1		1		2	1		1																																																			23
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	3			1		2	1	1	2	1				2		2	2	2																																																					26
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	95	84	43	36	32	21	28	22	6	8	6	5	3	2	7	2	1	2	2	4	1	4		1	2											1			1																																	1	420
AC	-	-	-	170	94	63	52	38	36	29	20	20	18	9	12	9	4	3	4	1	2			1				1						1																																																								587
AG	-	-	-	195	168	140	87	53	34	17	15	9	4	5		2		2			2																																																																					733
AT	-	-	-	228	143	95	82	40	43	21	16	13	9	10	8	11	3	1	1	2	1																																																																					727
CA	-	-	-	70	39	28	32	14	18	11	9	14	7	7	3	4	3	1		1	1		1																			1																																																264
CT	-	-	-	130	112	73	54	42	25	13	10	4	3	6	2	3	1	1		1																																																																						480
GA	-	-	-	112	89	73	51	33	30	16	14	5	6	2			1	1																																																																								433
GC	-	-	-	1																																																																																						1
GT	-	-	-	78	31	31	28	21	13	11	8	8	4	6	3	2	1		1	1	1	1																																																																				249
TA	-	-	-	164	120	56	49	27	17	15	14	11	11	4	9	7	2						1		1		1																																																															509
TC	-	-	-	171	158	138	80	49	30	22	15	5	6	3	1			1																																																																								679
TG	-	-	-	205	110	84	50	45	27	30	29	27	15	14	5	1	1	2	1	2			1			2											1																																																					652
AAC	-	-	66	28	8	6	4	1		1																1		1			1																																																											117
AAG	-	-	54	24	3	3	5	1	1																																																																																	91
AAT	-	-	101	34	16	12	3	3	6	1					1													1																																																														178
ACA	-	-	50	28	16	8	2	3	3	3	1			1	1	1		1		2																																																																						120
ACC	-	-	22	9	4	1	3		1																																																																																	40
ACG	-	-	1	1																																																																																						2
ACT	-	-	16	17	9	4	1		2	3	6						1						1					1														1																																																62
AGA	-	-	38	13	4	1					1																																																																															57
AGC	-	-	13	5	2	6	1		2			1	3	1	1																																																																											35
AGG	-	-	6	4	1																																																																																					11
AGT	-	-	20	21	5	9	11	2	6	4	2		1																																																																													81
ATA	-	-	58	23	17	12	4	1	1									1																																																																								117
ATC	-	-	93	46	26	18	18	15	10	6	4	1	2	1	2	1	1					1				1	1	2																																																														249
ATG	-	-	62	40	23	10	9	10	3	4	6	2		1	1	1	2				1		2	1		1	1	2																																																														182
ATT	-	-	98	50	22	10	5	5	1	1	1																																																																															193
CAA	-	-	64	41	21	13	5	4		1	1	1			1		1			1																																																																						154
CAC	-	-	7	16	5	2	3	1	1			1																																																																														36
CAG	-	-	14	8	7	7	2	2		1	2																	1																																																														44
CAT	-	-	50	20	15	15	4	5	5	6	3					1											1	2																																																														127
CCA	-	-	8	7	5	7		1	1																																																																																	29
CCT	-	-	6	1	1	2																																																																																				10
CGA	-	-	6	4	2																																																																																					12
CGT	-	-	2		1									1																																																																												4
CTA	-	-	16	11	5	7	4	2	2	5	7								1				1	1																																																																		62
CTC	-	-	12	4	2	2	1																																																																																			21
CTG	-	-	10	7	8	2	1		1	1		1		1																																																																												32
CTT	-	-	30	10	6	6	2																																																																																			54
GAA	-	-	18	5	7		2																																																																																			32
GAC	-	-	1	1																																																																																						2
GAG	-	-	11	3																																																																																						14
GAT	-	-	43	24	11	9	3	6	5	1	5		1	1		1	1	1						2		1		1																																																														116
GCA	-	-	9	8	2	1	3	1			1							1																																																																								26
GCT	-	-	8	4	1	1	3	1																																																																																		18
GGA	-	-	7	5	1				2																																																																																	15
GGT	-	-	15	7	8	6									1																																																																											37
GTA	-	-	26	12	10	7	5	3	5	5	6																	1																																																														80
GTC	-	-	3	6	2																																																																																					11
GTG	-	-	11	11	7	4	2																																																																																			35
GTT	-	-	45	30	9	5	1	3	1	3	1			1		1											1																																																															101
TAA	-	-	45	28	7	6	3	5	1	1																																																																																96
TAC	-	-	18	14	6	5	3	5	7	5	3		1		2	1					1																																																																					71
TAG	-	-	27	8	10	2	10	2	3	9	7		1										1																																																																			80
TAT	-	-	42	19	9	3	3	4	4	1																																																																																85
TCA	-	-	50	41	19	14	9	3		6	6		1		1		3		2		1		1					2																																																														159
TCC	-	-	6	4	1	2																																																																																				13
TCG	-	-	2	2			1																																																																																			5
TCT	-	-	33	25	8	3																																																																																				69
TGA	-	-	58	24	33	7	14	3	7	7	3			1			1			1	1		1			1		1																																																														163
TGC	-	-	20	15	9	5	4		3	1											1																																																																					58
TGG	-	-	16	14	6	5	6	1																																																																																		48
TGT	-	-	64	38	17	10	6	4	2			2		1	2	1					1							1																																																														149
TTA	-	-	51	27	10	2	5	4					1																																																																													100
TTC	-	-	44	14	6	1																																																																																				65
TTG	-	-	71	38	13	6	4				1	1		1						1																																																																						136
AAAC	-	50	18	3		1			1																																																																																	73
AAAG	-	21	1																																																																																							22
AAAT	-	126	19		1	1																																																																																				147
AACA	-	8	1		1		1																																																																																			11
AACC	-		1				1			1	1																																																																															4
AACT	-	1																																																																																								1
AAGA	-	7	1	3		1																																																																																				12
AAGC	-	2																																																																																								2
AAGG	-	12																																																																																								12
AAGT	-	1																																																																																								1
AATA	-	9		2																																																																																						11
AATC	-	31	6	2	4		5	1				1	1				1																																																																									52
AATG	-	43	9	5			1			1				2																																																																												61
AATT	-	125	40	4																																																																																						169
ACAA	-	4	1													1																																																																										6
ACAG	-	7	4	2																																																																																						13
ACAT	-	18	8	1																																																																																						27
ACCA	-	1																																																																																								1
ACCG	-	1																																																																																								1
ACCT	-	2	3																																																																																							5
ACGC	-	1																																																																																								1
ACGG	-			1																																																																																						1
ACTC	-					1																																																																																				1
ACTG	-	1											1																																																																													2
AGAA	-	10	3	2																																																																																						15
AGAC	-	5	3																																																																																							8
AGAT	-	3	1					1			1									1																																																																						7
AGCA	-	1																																																																																								1
AGGA	-	4	2																																																																																							6
AGGC	-	1																																																																																								1
AGGG	-	1																																																																																								1
AGGT	-	2																																																																																								2
AGTA	-	2																																																																																								2
AGTC	-	2		2																																																																																						4
AGTG	-	2						1																																																																																		3
ATAA	-	6																																																																																								6
ATAC	-	10	6			2																																																																																				18
ATAG	-		1	2		1			1		2									1																																																																						8
ATCA	-	22	5		1	2	2	2	1		1									1																																																																						37
ATCC	-	6	1	1	4						1																																																																															13
ATCG	-	3	1																																																																																							4
ATCT	-	1	1	3		1	1	1	1		1	1		2																																																																												13
ATGA	-	8	5	2																																																																																						15
ATGC	-	1																																																																																								1
ATGG	-	8	7	2																																																																																						17
ATGT	-	10	5	1	4	2																																																																																				22
ATTA	-	93	25	5																																																																																						123
ATTC	-	12	6	3	2	1															1																																																																					25
ATTG	-	30	11	7	2	1	4	1	1			1								1																																																																						59
ATTT	-	78	8	1																																																																																						87
CAAA	-	4	3	3																																																																																						10
CAAC	-	1	1	1																																																																																						3
CAAT	-	12	5	5	3	1	1	3			1																																																																															31
CACC	-	1																																																																																								1
CACT	-						1							1																																																																												2
CAGA	-	2	2		1																																																																																					5
CAGC	-	1																																																																																								1
CAGG	-				1																																																																																					1
CAGT	-								1			1																																																																														2
CATA	-	12	2		1																																																																																					15
CATC	-	9	2	1	1					1				1																																																																												15
CATG	-	4																																																																																								4
CATT	-	22	6	1	1			2				1																																																																														33
CCAC	-	3	1																																																																																							4
CCAG	-		1																																																																																							1
CCAT	-	5	1	1	3																																																																																					10
CCCT	-	1	1																																																																																							2
CCGA	-	1																																																																																								1
CCTA	-	1	1																																																																																							2
CCTC	-	1																																																																																								1
CCTT	-	2	1																																																																																							3
CGCA	-	1																																																																																								1
CTAC	-	3	1	2																																																																																						6
CTAG	-		1																																																																																							1
CTAT	-		2	2		1	1																																																																																			6
CTCC	-		1																																																																																							1
CTGA	-	1		1	1																																																																																					3
CTGT	-	5	1		1																																																																																					7
CTTA	-	5																																																																																								5
CTTC	-	2	1																																																																																							3
CTTT	-	4			1	1		1																																																																																		7
GAAA	-	5	2				1																																																																																			8
GAAG	-	1		1																																																																																						2
GAAT	-	17	10		2	1	1	1	1																																																																																	33
GACA	-	7	1	2																																																																																						10
GACG	-	2																																																																																								2
GACT	-	1	1				1																																																																																			3
GAGG	-	1	1																																																																																							2
GAGT	-					1										1																																																																										2
GATA	-	1	1	1		1		1	2		2	2	1																																																																													12
GATC	-	4																																																																																								4
GATG	-	9	4	5	2	1					1																																																																															22
GATT	-	11	5	7	1	1	1	2			1									1																																																																						30
GCAT	-	1																																																																																								1
GCGA	-	1																																																																																								1
GGAA	-	5		1																																																																																						6
GGAC	-	1																																																																																								1
GGAG	-	2	1																																																																																							3
GGAT	-	4	2	1																																																																																						7
GGTA	-		1																																																																																							1
GGTC	-		1																																																																																							1
GGTG	-	2																																																																																								2
GGTT	-		1																																																																																							1
GTAT	-	6		1	2																																																																																					9
GTCA	-	2		1																																																																																						3
GTCT	-	4	1																																																																																							5
GTGC	-	2		1																																																																																						3
GTTA	-	1																																																																																								1
GTTC	-	1	1																																																																																							2
GTTG	-		1																																																																																							1
GTTT	-	21	6	1	1			1																																																																																		30
TAAA	-	10	1																																																																																							11
TAAC	-	2																																																																																								2
TAAG	-				1																																																																																					1
TAAT	-	86	20	4	1		1																																																																																			112
TACA	-	5	1	1		1				1																																																																																9
TACC	-	5	2																																																																																							7
TACT	-		2																																																																																							2
TAGA	-		3			1	1					1	1																																																																													7
TAGC	-	5																																																																																								5
TAGG	-	3																																																																																								3
TAGT	-	1																																																																																								1
TATC	-	5	3	1	1	2					1		1							1																																																																						15
TATG	-	10	8		1								1																																																																													20
TATT	-	8	3	1																																																																																						12
TCAA	-	13	3		1	1	1	2		1	1									1																																																																						24
TCAC	-	2																																																																																								2
TCAG	-			1																																																																																						1
TCAT	-	5	4	1																																																																																						10
TCCA	-	4	3	2																																																																																						9
TCCG	-	2		1																																																																																						3
TCCT	-	3				1																																																																																				4
TCGG	-	1		1																																																																																						2
TCTA	-	3	3	1				2				1		2						1																																																																						13
TCTG	-	1	1	1	1																																																																																					4
TCTT	-	9	2																																																																																							11
TGAA	-	8	5	2	1	2	1	2	1																																																																																	22
TGAC	-	6	3			1				1		1																																																																														12
TGAG	-	1			1					1																																																																																3
TGAT	-	25	6		3	1	1		1	1					1																																																																											39
TGCA	-	3	1																																																																																							4
TGCC	-		1																																																																																							1
TGCG	-	1	1																																																																																							2
TGGA	-	3	4					1		1																																																																																9
TGGT	-	5	1																																																																																							6
TGTA	-	18	3	6	1	1			1																																																																																	30
TGTC	-	8	4	2																																																																																						14
TGTT	-	14	4	1							1																																																																															20
TTAA	-	88	20	2																																																																																						110
TTAC	-	5																																																																																								5
TTAG	-		1																																																																																							1
TTAT	-	21	4																																																																																							25
TTCA	-	12	3	7		1		1																																																																																		24
TTCC	-	7	2																																																																																							9
TTCG	-		1																																																																																							1
TTCT	-	10	2																																																																																							12
TTGA	-	16	9	4		4	2	2	1							1			2	1																																																																						42
TTGC	-	1																																																																																								1
TTGG	-	1	1	2	1	3																																																																																				8
TTGT	-	9	2	1	2	1														1																																																																						16
TTTA	-	31	8																																																																																							39
TTTC	-	24	1																																																																																							25
TTTG	-	24	10	1	1	1			1																																																																																	38
AAAAC	77	9																																																																																								86
AAAAG	23	1																																																																																								24
AAAAT	112	7																																																																																								119
AAACA	12																																																																																									12
AAACC	1																																																																																									1
AAACG	1																																																																																									1
AAAGA	9																																																																																									9
AAAGC	2	1																																																																																								3
AAAGG	5																																																																																									5
AAATA	11	1																																																																																								12
AAATC	3	1																																																																																								4
AAATG	24	6	1	2																																																																																						33
AAATT	64	2																																																																																								66
AACAA	8																																																																																									8
AACAC		1																																																																																								1
AACGG	1																																																																																									1
AACTG	2																																																																																									2
AAGAA	5	2																																																																																								7
AAGAG	2																																																																																									2
AAGCT	1																																																																																									1
AAGGA	2																																																																																									2
AAGTT	2																																																																																									2
AATAA	14																																																																																									14
AATAC	2																																																																																									2
AATAG	2																																																																																									2
AATAT	1																																																																																									1
AATCA	1				1						1																																																																															3
AATCT	1																																																																																									1
AATGA	9	2	2																																																																																							13
AATGC	3																																																																																									3
AATGG	8	3	1																																																																																							12
AATGT	1																																																																																									1
AATTA	32	1																																																																																								33
AATTC	8	1	3	1	1			1																																																																																		15
AATTG	7																																																																																									7
AATTT	64	3																																																																																								67
ACAAA	5																																																																																									5
ACAAC				1																																																																																						1
ACACA		1																																																																																								1
ACATA	1																																																																																									1
ACATC	2																																																																																									2
ACATG		1																																																																																								1
ACCAA	2																																																																																									2
ACCAT	3																																																																																									3
ACCCC	1																																																																																									1
ACCGT	1																																																																																									1
ACGAT	1																																																																																									1
ACGGA	1																																																																																									1
ACTAA	1																																																																																									1
ACTCG	1																																																																																									1
ACTGA	3																																																																																									3
ACTTC	1	1																																																																																								2
ACTTT	1		3																																																																																							4
AGAAA	13	1																																																																																								14
AGAAG	3																																																																																									3
AGAAT	2																																																																																									2
AGAGA	4																																																																																									4
AGCAA	1																																																																																									1
AGCTG	1																																																																																									1
AGCTT	2																																																																																									2
AGGAA	3	1																																																																																								4
AGGAG	1																																																																																									1
AGGGG	3																																																																																									3
AGTGC	1																																																																																									1
AGTTC	3		1																																																																																							4
AGTTT	1																																																																																									1
ATAAA	13																																																																																									13
ATAAT	4																																																																																									4
ATACG	1																																																																																									1
ATAGA		1																																																																																								1
ATATA	5	1																																																																																								6
ATATC	3	1														1																																																																										5
ATATG	1		1																																																																																							2
ATATT	4																																																																																									4
ATCAA	1	1																																																																																								2
ATCAT	6	1									1																																																																															8
ATCCA	1			1																																																																																						2
ATCCC		1																																																																																								1
ATCCG	1		1																																																																																							2
ATCGA	1																																																																																									1
ATCGG	1																																																																																									1
ATCGT		1																																																																																								1
ATCTA	1																																																																																									1
ATGAA	15	3	1	2																																																																																						21
ATGAC			1																																																																																							1
ATGAT	4	1	1																																																																																							6
ATGCG			1																																																																																							1
ATGGA	3	1																																																																																								4
ATGGG	1																																																																																									1
ATGGT	1																																																																																									1
ATGTC		1																																																																																								1
ATGTG	2	1																																																																																								3
ATGTT	1																																																																																									1
ATTAA	18	1																																																																																								19
ATTAG	2																																																																																									2
ATTAT	2																																																																																									2
ATTCA	7	3		1																																																																																						11
ATTCC	11	1	2	2			1	2																																																																																		19
ATTGA	4																																																																																									4
ATTGC	2																																																																																									2
ATTGT		2	1																																																																																							3
ATTTA	16	1																																																																																								17
ATTTC	39	6	1																																																																																							46
ATTTG	2																																																																																									2
ATTTT	87	5																																																																																								92
CAAAA	9	1																																																																																								10
CAAAC	1																																																																																									1
CAAAG	1	1																																																																																								2
CAAAT	3																																																																																									3
CAACA			1																																																																																							1
CAACT		1																																																																																								1
CAATA	1																																																																																									1
CAATT	6	3																																																																																								9
CACAC	1	1																																																																																								2
CACAG	1																																																																																									1
CACAT	1																																																																																									1
CACCA			1																																																																																							1
CACCT		1																																																																																								1
CAGAA	1																																																																																									1
CAGAT		1		1																																																																																						2
CAGCA	1																																																																																									1
CAGTA	1																																																																																									1
CAGTC			1																																																																																							1
CATAA			1																																																																																							1
CATAT		1	1																																																																																							2
CATCA			1																																																																																							1
CATCT	1	1																																																																																								2
CATGA	1																																																																																									1
CATGT	1																																																																																									1
CATTC	7	6	1	2			1																																																																																			17
CATTT	19	1	3																																																																																							23
CCACA					1																																																																																					1
CCATC	3																																																																																									3
CCATT	1	1																																																																																								2
CCCAT					1																																																																																					1
CCCCT	1			1																																																																																						2
CCCTC	1																																																																																									1
CCGAC				1																																																																																						1
CCGAT	1	1																																																																																								2
CCGCA	1																																																																																									1
CCGTA	1																																																																																									1
CCTCA	1																																																																																									1
CCTGA	1																																																																																									1
CCTTA	1																																																																																									1
CCTTC		2																																																																																								2
CCTTT	1																																																																																									1
CGAAA	1																																																																																									1
CGAGC				1																																																																																						1
CGATA		1																																																																																								1
CGGAA	1																																																																																									1
CGTGA	1																																																																																									1
CTAAG	1	1																																																																																								2
CTAGC	1																																																																																									1
CTATC		1																																																																																								1
CTATT	1																																																																																									1
CTCAC	1	1																																																																																								2
CTCAT	2																																																																																									2
CTCTT	1																																																																																									1
CTGAA	3																																																																																									3
CTGAT	3																																																																																									3
CTGGG	1																																																																																									1
CTTAC	1																																																																																									1
CTTCC	1																																																																																									1
CTTCT	1	1																																																																																								2
CTTTA	2																																																																																									2
CTTTC	3																																																																																									3
CTTTT	7	1																																																																																								8
GAAAA	23	1	1																																																																																							25
GAAAC	1																																																																																									1
GAAAG	2																																																																																									2
GAAAT	24	1																																																																																								25
GAACC	1																																																																																									1
GAACG	1																																																																																									1
GAACT	1																																																																																									1
GAAGA	3																																																																																									3
GAAGC	2																																																																																									2
GAAGG	2																																																																																									2
GAATA	1																																																																																									1
GAATG	12	2	2																																																																																							16
GAATT	7			1																																																																																						8
GACAA		2																																																																																								2
GACCG	1																																																																																									1
GAGAA	2																																																																																									2
GAGAG	1																																																																																									1
GAGGG	1																																																																																									1
GATAC	1																																																																																									1
GATAG	2																																																																																									2
GATAT																1																																																																										1
GATCA			1																																																																																							1
GATCC	1																																																																																									1
GATCG	1	1																																																																																								2
GATGA	1																																																																																									1
GATGC		2	1																																																																																							3
GATGG	1																																																																																									1
GATGT					1																																																																																					1
GATTT	1																																																																																									1
GCAAA	1																																																																																									1
GCGGT	1																																																																																									1
GCTCG	1																																																																																									1
GCTTA	2																																																																																									2
GGAAA	3																																																																																									3
GGAAC	2																																																																																									2
GGAAG	1																																																																																									1
GGAAT	3	5		2		1		1																																																																																		12
GGATG	1																																																																																									1
GGTAA		1																																																																																								1
GGTAT	1																																																																																									1
GGTCA	2																																																																																									2
GGTGA	1	1																																																																																								2
GGTGC	1																																																																																									1
GGTTC	1																																																																																									1
GGTTG		1																																																																																								1
GTAAA	1									1																																																																																2
GTAAG	1		1																																																																																							2
GTAAT	1																																																																																									1
GTACA	1																																																																																									1
GTACT	1																																																																																									1
GTAGG	1																																																																																									1
GTATC	1																																																																																									1
GTATG	1																																																																																									1
GTATT	1																																																																																									1
GTCCG			1																																																																																							1
GTCTT		1																																																																																								1
GTGAA		2																																																																																								2
GTGAC	2																																																																																									2
GTGTC		1																																																																																								1
GTGTG	2																																																																																									2
GTGTT	1																																																																																									1
GTTCA	1	2																																																																																								3
GTTCC		1																																																																																								1
GTTGG		1																																																																																								1
GTTTA	1																																																																																									1
GTTTC	1																																																																																									1
GTTTT	13	5	1																																																																																							19
TAAAA	12																																																																																									12
TAAAC	1																																																																																									1
TAAAG	2																																																																																									2
TAAAT	19	1	1																																																																																							21
TAATA	2		1																																																																																							3
TAATC	1																																																																																									1
TAATG	2																																																																																									2
TAATT	26	1																																																																																								27
TACAA	2																																																																																									2
TACAG	1																																																																																									1
TACCA	1																																																																																									1
TAGTT	1																																																																																									1
TATAA	1																																																																																									1
TATAC	1																																																																																									1
TATAT	5																																																																																									5
TATCA	9	1																																																																																								10
TATGA	1	1																																																																																								2
TATGG	1	1																																																																																								2
TATGT	3																																																																																									3
TATTA	3																																																																																									3
TATTG	1																																																																																									1
TATTT	27	2																																																																																								29
TCAAA	1																																																																																									1
TCAAT	6			1																																																																																						7
TCACA		1																																																																																								1
TCACC		1																																																																																								1
TCACT	1																																																																																									1
TCAGA	1																																																																																									1
TCAGC	1																																																																																									1
TCAGT				1																																																																																						1
TCATA	4																																																																																									4
TCATC	2																																																																																									2
TCATT	12	2																																																																																								14
TCCAA	2																																																																																									2
TCCAT	11	1	1																																																																																							13
TCCCA			1																																																																																							1
TCCCC	2																																																																																									2
TCCCT	1																																																																																									1
TCCTC	2																																																																																									2
TCCTT	1																																																																																									1
TCGAA	1																																																																																									1
TCGCA	1																																																																																									1
TCGGA	1																																																																																									1
TCGTA						1																																																																																				1
TCTAA	1																																																																																									1
TCTAG	1																																																																																									1
TCTAT	1																																																																																									1
TCTGA	1		1																																																																																							2
TCTGT	1																																																																																									1
TCTTC	1																																																																																									1
TCTTT	6																																																																																									6
TGAAA	21		1	1																																																																																						23
TGAAC	1																																																																																									1
TGAAG	1																																																																																									1
TGAAT	4	1																																																																																								5
TGAGA	1	1																																																																																								2
TGAGT	1																																																																																									1
TGATA	5	2	1							1																																																																																9
TGATC	3																																																																																									3
TGATG			1																																																																																							1
TGATT	2																																																																																									2
TGCTA	1																																																																																									1
TGCTG		1																																																																																								1
TGGAA	6	4	1	1																																																																																						12
TGGAC	1																																																																																									1
TGGAT	1																																																																																									1
TGGGA	1																																																																																									1
TGGGG	1																																																																																									1
TGGTT	1																																																																																									1
TGTAA	2																																																																																									2
TGTAC	1																																																																																									1
TGTAT	1	1																																																																																								2
TGTGA	2																																																																																									2
TGTGC	1																																																																																									1
TGTGT	2	1																																																																																								3
TGTTA	3																																																																																									3
TGTTG	1																																																																																									1
TGTTT	13	2																																																																																								15
TTAAA	34	3																																																																																								37
TTAAG	1																																																																																									1
TTAAT	25	3																																																																																								28
TTACC	1																																																																																									1
TTAGT	2																																																																																									2
TTATA	1																																																																																									1
TTATC	1																																																																																									1
TTATT	18																																																																																									18
TTCAA	5	3																																																																																								8
TTCAG	1		1					1																																																																																		3
TTCAT	17	3	1																																																																																							21
TTCCA	8	2	2	1																																																																																						13
TTCCT	1																																																																																									1
TTCGA	1																																																																																									1
TTCTA	3																																																																																									3
TTCTG									2				1																																																																													3
TTCTT	9																																																																																									9
TTGAA	7	1	1																																																																																							9
TTGAT	2																																																																																									2
TTGCA	1																																																																																									1
TTGTT	14																																																																																									14
TTTAA	31	1																																																																																								32
TTTAC						1			1																																																																																	2
TTTAT	18	2																																																																																								20
TTTCA	25	4																																																																																								29
TTTCC	5	1																																																																																								6
TTTCG	1																																																																																									1
TTTCT	9																																																																																									9
TTTGA	2																																																																																									2
TTTGC	3																																																																																									3
TTTGT	21	5																																																																																								26
TTTTA	31	3																																																																																								34
TTTTC	26	1																																																																																								27
TTTTG	37	1	1																																																																																							39
AAAAAC	20	1																																																																																								21
AAAAAG	5																																																																																									5
AAAAAT	24	1																																																																																								25
AAAACA	3																																																																																									3
AAAAGC	1																																																																																									1
AAAAGT	1																																																																																									1
AAAATA	1																																																																																									1
AAAATG	2																																																																																									2
AAAATT	9																																																																																									9
AAACAA	3																																																																																									3
AAAGAG	1																																																																																									1
AAAGCT	1																																																																																									1
AAAGGT	1																																																																																									1
AAATGC	1																																																																																									1
AAATGG	1																																																																																									1
AAATTA	6																																																																																									6
AAATTC	2																																																																																									2
AAATTG	3																																																																																									3
AAATTT	9																																																																																									9
AACAAA	3																																																																																									3
AACAAT	6																																																																																									6
AACACC	1																																																																																									1
AACAGC		1																																																																																								1
AACATA	1																																																																																									1
AACTAC													1																																																																													1
AACTCG	2																																																																																									2
AAGAAA	2																																																																																									2
AAGAAC		1																																																																																								1
AAGCCT		1																																																																																								1
AAGGAA	1																																																																																									1
AATAAA	1																																																																																									1
AATAAC	5																																																																																									5
AATACA	1																																																																																									1
AATAGC	1																																																																																									1
AATAGT		1																																																																																								1
AATGAA	1																																																																																									1
AATGAT	4																																																																																									4
AATTAA	2																																																																																									2
AATTAC			1																																																																																							1
AATTAG	1																																																																																									1
AATTAT	1																																																																																									1
AATTGA	3																																																																																									3
AATTGG	1																																																																																									1
AATTTA	4	1																																																																																								5
AATTTC	2																																																																																									2
AATTTG	3	1																																																																																								4
AATTTT	4																																																																																									4
ACAAAA	3																																																																																									3
ACAAAG		1																																																																																								1
ACAACT	2																																																																																									2
ACAATA	1																																																																																									1
ACACAA	1			1																																																																																						2
ACACAG	7	1																																																																																								8
ACACAT	36	4	1																																																																																							41
ACAGAA	1																																																																																									1
ACAGAC	1																																																																																									1
ACAGCA	1																																																																																									1
ACATAC	7	3	1					1																																																																																		12
ACATAT	2																																																																																									2
ACCATC	1						1																																																																																			2
ACCGCC	1																																																																																									1
ACCTAT		1																																																																																								1
ACCTCC				1																																																																																						1
ACTACA	1				1																																																																																					2
ACTACC	1																																																																																									1
ACTATC	1																																																																																									1
ACTGCT	3																																																																																									3
AGAAAG		1																																																																																								1
AGACAG	1																																																																																									1
AGAGAA	7																																																																																									7
AGAGGA	1																																																																																									1
AGAGGG	1																																																																																									1
AGCAAC	1	1																																																																																								2
AGCACA			1																																																																																							1
AGCACC	2																																																																																									2
AGCACT	1																																																																																									1
AGCAGT	4	1																																																																																								5
AGCATT	1																																																																																									1
AGCTTA	1																																																																																									1
AGGAAA	1																																																																																									1
AGGACG	1																																																																																									1
AGGGAA	1																																																																																									1
AGTAGC	2	1																																																																																								3
AGTGAG	1																																																																																									1
AGTGAT			1																																																																																							1
AGTTCA	1																																																																																									1
AGTTCT	1																																																																																									1
ATAAAA	2																																																																																									2
ATAAAT	1																																																																																									1
ATAATC	2																																																																																									2
ATAATG	1	1																																																																																								2
ATACAC	4																																																																																									4
ATACTA		1																																																																																								1
ATAGTA	1																																																																																									1
ATATCT	2																																																																																									2
ATATGT	1																																																																																									1
ATCAAC				1																																																																																						1
ATCACC			1																																																																																							1
ATCACT		1																																																																																								1
ATCATA	1																																																																																									1
ATCATG	1																																																																																									1
ATCATT	8																																																																																									8
ATCCTG			1																																																																																							1
ATCGAA	1																																																																																									1
ATCTTC	1																																																																																									1
ATGACG	1																																																																																									1
ATGATA	8	1	2																																																																																							11
ATGATT	1			1																																																																																						2
ATGGGT	1																																																																																									1
ATGTAT	1																																																																																									1
ATGTGC	1		1																																																																																							2
ATGTGT	6	1	1		1																																																																																					9
ATGTTG	2																																																																																									2
ATTAAA	2	1																																																																																								3
ATTAAT	1																																																																																									1
ATTACG		1																																																																																								1
ATTATA	1																																																																																									1
ATTATC	1					1																																																																																				2
ATTCCA	1																																																																																									1
ATTCCT	1																																																																																									1
ATTGAA	2																																																																																									2
ATTGCC	1																																																																																									1
ATTGTT	2																																																																																									2
ATTTAA	5																																																																																									5
ATTTCA	3																																																																																									3
ATTTGA	1																																																																																									1
ATTTTG	1																																																																																									1
ATTTTT	19																																																																																									19
CAAAAA	4	1																																																																																								5
CAACAG	1	5																																																																																								6
CAACAT	1																																																																																									1
CAACTA	2																																																																																									2
CAACTG	1																																																																																									1
CAATTT	1																																																																																									1
CACACG	1																																																																																									1
CACAGA	1																																																																																									1
CACATA	4	3		1		1																																																																																				9
CACATG	1																																																																																									1
CACATT		1																																																																																								1
CACCAT	1																																																																																									1
CACCTC			1																																																																																							1
CAGACA	3	1																																																																																								4
CAGCAA	2																																																																																									2
CAGCCA			1																																																																																							1
CAGTAG														1																																																																												1
CATACA	8		1					1																																																																																		10
CATCAA						1																																																																																				1
CATCAC	1																																																																																									1
CATCTG	1																																																																																									1
CATGTG				1																																																																																						1
CATTAT	1																																																																																									1
CATTTC	1																																																																																									1
CATTTT	1																																																																																									1
CCACAC		1																																																																																								1
CCATAA	1																																																																																									1
CCATAC	1																																																																																									1
CCATTG	1																																																																																									1
CCCCCT	1																																																																																									1
CCCCTC	1																																																																																									1
CCTAAG	1	1																																																																																								2
CCTCTC	1																																																																																									1
CCTGAC	1																																																																																									1
CGAGAA	1																																																																																									1
CGAGTT	3																																																																																									3
CGATGA	1																																																																																									1
CGCCAT	1																																																																																									1
CGGTGT	1																																																																																									1
CGTAGT	1																																																																																									1
CGTGAA	1																																																																																									1
CTACTG	3	1								1																																																																																5
CTATAT	1																																																																																									1
CTATTA	1	1																																																																																								2
CTCGTT	1																																																																																									1
CTCTAC	1																																																																																									1
CTCTCC	1	1																																																																																								2
CTCTGT	1																																																																																									1
CTCTTT	1																																																																																									1
CTGCAG	1																																																																																									1
CTGCTA	3																																																																																									3
CTGTGT			1																																																																																							1
CTGTTG	1																																																																																									1
CTTAGG	1																																																																																									1
CTTATT	1																																																																																									1
CTTCAT	1																																																																																									1
CTTCTA	1																																																																																									1
CTTTCA	1																																																																																									1
CTTTCT	1																																																																																									1
CTTTTC		1																																																																																								1
CTTTTG	1																																																																																									1
CTTTTT	1										1																																																																															2
GAAAAA	3																																																																																									3
GAAAAT	1																																																																																									1
GAAAGA	3																																																																																									3
GAACAA	1																																																																																									1
GAAGAC	1																																																																																									1
GAAGGA	1																																																																																									1
GAATAA	1																																																																																									1
GAATCA	1																																																																																									1
GAATCG	1																																																																																									1
GACGAA	1																																																																																									1
GACGAT	2																																																																																									2
GAGAAA	3	1																																																																																								4
GAGAGG	4	1																																																																																								5
GAGAGT	1																																																																																									1
GAGGAC	1																																																																																									1
GAGGGA	1																																																																																									1
GAGGTA	1																																																																																									1
GATAAC		1																																																																																								1
GATAGA		1																																																																																								1
GATAGT	2																																																																																									2
GATGAA	2																																																																																									2
GATGAC	1																																																																																									1
GATGAG	1																																																																																									1
GATGCA	1																																																																																									1
GCAAAA	1																																																																																									1
GCAGAG	1																																																																																									1
GCAGCG	1																																																																																									1
GCCGTG	1																																																																																									1
GCCTAA	1																																																																																									1
GCGGAA	1																																																																																									1
GCGGCA	1																																																																																									1
GCTACT	1																																																																																									1
GCTCAA	1																																																																																									1
GCTCTC	1																																																																																									1
GCTGCA		2																																																																																								2
GCTGCC	1																																																																																									1
GCTGTT	1																																																																																									1
GGAGCT	1																																																																																									1
GGATTA	1																																																																																									1
GGCAGC	1																																																																																									1
GGCTTA	1																																																																																									1
GGGGGA	1																																																																																									1
GTAATT	1																																																																																									1
GTAGCA	1																																																																																									1
GTAGTG	1			1																																																																																						2
GTAGTT						1																																																																																				1
GTCATT	1																																																																																									1
GTGACA	1																																																																																									1
GTGATA	2	1																																																																																								3
GTGATG	1																																																																																									1
GTGCTG	1																																																																																									1
GTGGGT	1																																																																																									1
GTGGTA					1																																																																																					1
GTGTAG	1		1																																																																																							2
GTGTAT	3																																																																																									3
GTGTGC	1	1																																																																																								2
GTTTTT		2																																																																																								2
TAAAAA	7																																																																																									7
TAAAAT	2																																																																																									2
TAAATA	1																																																																																									1
TAAATT	5																																																																																									5
TAACAG	1																																																																																									1
TAAGCC	1																																																																																									1
TAAGGG	1																																																																																									1
TAATGA	2																																																																																									2
TAATTG	1																																																																																									1
TAATTT	1																																																																																									1
TACAAC	1																																																																																									1
TACAAT	1																																																																																									1
TACACA	4							1																																																																																		5
TACACT	1																																																																																									1
TACATA	1																																																																																									1
TACGGG	1																																																																																									1
TACGTG	1																																																																																									1
TACTAT	1																																																																																									1
TAGAGG	1																																																																																									1
TAGATA	1																																																																																									1
TAGCAG	2	2	1	1																																																																																						6
TAGTAA	1																																																																																									1
TAGTAC	2																																																																																									2
TATACA		1																																																																																								1
TATATC	2																																																																																									2
TATATG	2			1																																																																																						3
TATCAT	7																																																																																									7
TATGAT	1																																																																																									1
TATGTG	4																																																																																									4
TATTAC	1	1																																																																																								2
TATTTT	1																																																																																									1
TCAACA		1																																																																																								1
TCAACC	1																																																																																									1
TCAATT	1																																																																																									1
TCACTC	1																																																																																									1
TCACTT	1																																																																																									1
TCATTA	3																																																																																									3
TCATTT	1																																																																																									1
TCCCCC	1																																																																																									1
TCCCTC	1	1																																																																																								2
TCCTCT	1																																																																																									1
TCCTTC	1																																																																																									1
TCCTTT	1																																																																																									1
TCGTGA		1																																																																																								1
TCTATA	1																																																																																									1
TCTCAC	1																																																																																									1
TCTCCC	1																																																																																									1
TCTCTT	5	2																																																																																								7
TCTGTG				1																																																																																						1
TCTTAC	1																																																																																									1
TCTTCA	1																																																																																									1
TCTTCC											1																																																																															1
TCTTTC	3			1																																																																																						4
TCTTTT	1																																																																																									1
TGAAAA	1																																																																																									1
TGAAAT	1																																																																																									1
TGAAGT	1																																																																																									1
TGAATA	1																																																																																									1
TGACAC	1																																																																																									1
TGATAA	3	1																																																																																								4
TGATGC	2																																																																																									2
TGATTC	2																																																																																									2
TGCAAC	1																																																																																									1
TGCAGC	2																																																																																									2
TGCGAC	2																																																																																									2
TGCGTG	1																																																																																									1
TGCTAA	1																																																																																									1
TGCTAT	1																																																																																									1
TGCTGA	1																																																																																									1
TGCTGT	4	1												1																																																																												6
TGGAAA	1																																																																																									1
TGGAAC	1																																																																																									1
TGGAGG		1																																																																																								1
TGGTGA	1																																																																																									1
TGGTGT	1	1																																																																																								2
TGTAGG		1																																																																																								1
TGTATA	1																																																																																									1
TGTATG	13	2	2																																																																																							17
TGTGAA	1																																																																																									1
TGTGTA	26	5	2	2	2				1																																																																																	38
TGTGTC	5																																																																																									5
TGTGTT	1																																																																																									1
TGTTGC	1	1																																																																																								2
TGTTTG	2																																																																																									2
TGTTTT	3																																																																																									3
TTAAAA	2																																																																																									2
TTAAAT	3																																																																																									3
TTAATC	1																																																																																									1
TTAATT	3																																																																																									3
TTAGGC	1	1																																																																																								2
TTATTG	2																																																																																									2
TTCAAT	1																																																																																									1
TTCACC		1																																																																																								1
TTCATC	1																																																																																									1
TTCATT	1																																																																																									1
TTCCCC	1																																																																																									1
TTCCTC	1																																																																																									1
TTCCTT					1																																																																																					1
TTCGAA	1																																																																																									1
TTCGGT	1																																																																																									1
TTCTCA	1																																																																																									1
TTCTCT	2																																																																																									2
TTCTTG	1																																																																																									1
TTCTTT	1																																																																																									1
TTGAAA	3																																																																																									3
TTGATA	1																																																																																									1
TTGATG	1																																																																																									1
TTGTGG	2																																																																																									2
TTGTTA	2	1		1																																																																																						4
TTGTTT		2	1																																																																																							3
TTTAAA	4																																																																																									4
TTTAAT	7																																																																																									7
TTTATT	6																																																																																									6
TTTCAA	1																																																																																									1
TTTCCA	2																																																																																									2
TTTCTC	1																																																																																									1
TTTCTT	3																																																																																									3
TTTGAA	3																																																																																									3
TTTGAC		1																																																																																								1
TTTGAG	1																																																																																									1
TTTGTT	4																																																																																									4
TTTTAA	9																																																																																									9
TTTTCA	1																																																																																									1
TTTTCT	3																																																																																									3
TTTTGC	2																																																																																									2
TTTTGT	4																																																																																									4
TTTTTA	8																																																																																									8
TTTTTC	5																																																																																									5
TTTTTG	6	1																																																																																								7

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	193	162	92	69	62	42	53	34	18	15	16	8	7	10	10	5	2	4	4	6	1	4		2	2								3		1	1			1							1																										1	829
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	6	6	1	1	2	2	2	1	1	3	2	1	3	1	2	1	2	4	3		1																																																			49
AC/GT	-	-	-	523	274	206	162	118	94	81	66	69	44	36	23	16	9	6	6	5	4	1	2	1		2		1						1			1					1																																																1752
AG/CT	-	-	-	608	527	424	272	177	119	68	54	23	19	16	3	5	2	5		1	2																																																																					2325
AT/AT	-	-	-	392	263	151	131	67	60	36	30	24	20	14	17	18	5	1	1	2	1		1		1		1																																																															1236
CG/CG	-	-	-	1																																																																																						1
AAC/GTT	-	-	360	203	84	48	22	15	6	8	4	4		4	4	3	1	1		4	1					1	1	2			1																																																											777
AAG/CTT	-	-	217	91	34	14	9	1	1		1																																																																															368
AAT/ATT	-	-	395	181	81	45	23	22	13	4	1		1		1			1										1																																																														769
ACC/GGT	-	-	79	64	35	25	14	3	3			1			1																																																																											225
ACG/CGT	-	-	15	14	5		1							1																																																																												36
ACT/AGT	-	-	123	83	45	34	34	14	25	31	31		3		2	1	1		1		1		3	1				2														1																																																436
AGC/CTG	-	-	74	47	29	22	14	4	6	3	3	2	3	2	1			1			1							1																																																														213
AGG/CCT	-	-	48	21	6	6	1		2																																																																																	84
ATC/ATG	-	-	356	195	127	73	57	42	30	30	27	3	4	4	4	4	8	1	2	1	3	1	4	3		4	3	10																																																														996
AAAC/GTTT	-	134	45	10	5	3	1	1	2		1					1				1																																																																						204
AAAG/CTTT	-	90	12	5	1	2	1	1																																																																																		112
AAAT/ATTT	-	289	43	4	1	1																																																																																				338
AACC/GGTT	-	8	6	3	1	3	1			1	1																																																																															24
AACG/CGTT	-	1	2																																																																																							3
AACT/AGTT	-	5	1																																																																																							6
AAGC/CTTG	-	4																																																																																								4
AAGG/CCTT	-	36	6	2		1																																																																																				45
AAGT/ACTT	-	13	2		1																																																																																					16
AATC/ATTG	-	160	50	25	15	11	17	13	4	2	4	2	1		1	1	1		2	5																																																																						314
AATG/ATTC	-	127	48	21	6	5	3	6	2	1		1		2							1																																																																					223
AATT/AATT	-	392	105	15	1		1																																																																																			514
ACAG/CTGT	-	39	17	7	3																																																																																					66
ACAT/ATGT	-	89	33	10	9	6			1	1			1																																																																													150
ACCC/GGGT	-	6	1																																																																																							7
ACCG/CGGT	-	3	1	1																																																																																						5
ACCT/AGGT	-	16	8	2																																																																																						26
ACGC/CGTG	-	5	1	1																																																																																						7
ACGG/CCGT	-	5		2																																																																																						7
ACTC/AGTG	-	5			1	2	1	1		1				1		1																																																																										13
ACTG/AGTC	-	13	4	5	1	1	1		1	1		2	1																																																																													30
AGAT/ATCT	-	13	15	10	1	7	3	5	4		7	5	3	4						4																																																																						81
AGCC/CTGG	-	1	1																																																																																							2
AGCG/CGCT	-	1																																																																																								1
AGCT/AGCT	-	5	1																																																																																							6
AGGC/CCTG	-	1	1		1																																																																																					3
AGGG/CCCT	-	6	4																																																																																							10
ATCC/ATGG	-	48	24	13	10	1		1		2	2			1																																																																												102
ATCG/ATCG	-	7	1																																																																																							8
ATGC/ATGC	-	9	1																																																																																							10
AAAAC/GTTTT	209	23	2																																																																																							234
AAAAG/CTTTT	130	7	1																																																																																							138
AAAAT/ATTTT	343	20																																																																																								363
AAACC/GGTTT	5																																																																																									5
AAACG/CGTTT	5																																																																																									5
AAACT/AGTTT	7																																																																																									7
AAAGC/CTTTG	8	2																																																																																								10
AAAGG/CCTTT	26	2																																																																																								28
AAAGT/ACTTT	6		3			1			1	1																																																																																12
AAATC/ATTTG	18	2			1						1																																																																															22
AAATG/ATTTC	205	28	10	5																																																																																						248
AAATT/AATTT	329	17	1																																																																																							347
AACAC/GTGTT	4	3	1	1																																																																																						9
AACAG/CTGTT	2								2				1																																																																													5
AACAT/ATGTT	8		1																																																																																							9
AACCC/GGGTT		2																																																																																								2
AACCG/CGGTT	2																																																																																									2
AACGG/CCGTT	6	1																																																																																								7
AACTC/AGTTG	1	1																																																																																								2
AACTG/AGTTC	15	2	2	1				1																																																																																		21
AACTT/AAGTT	3																																																																																									3
AAGAC/CTTGT		3																																																																																								3
AAGAG/CTCTT	17	1																																																																																								18
AAGAT/ATCTT	1																																																																																									1
AAGCG/CGCTT	2																																																																																									2
AAGCT/AGCTT	6	1																																																																																								7
AAGGG/CCCTT	5	2																																																																																								7
AAGGT/ACCTT	4	1	1																																																																																							6
AAGTG/ACTTC	3	3																																																																																								6
AATAC/ATTGT	8	3	1																																																																																							12
AATAG/ATTCT	10	1																																																																																								11
AATAT/ATATT	28	1	1																																																																																							30
AATCC/ATTGG	4			1																																																																																						5
AATCG/ATTCG	3																																																																																									3
AATCT/AGATT	6																																																																																									6
AATGC/ATTGC	6																																																																																									6
AATGG/ATTCC	70	26	10	8		1	2	3																																																																																		120
AATGT/ACATT	6																																																																																									6
AATTC/AATTG	61	12	4	4	1			1																																																																																		83
ACACC/GGTGT	3	1	1		1																																																																																					6
ACACG/CGTGT		1																																																																																								1
ACAGC/CTGTG	3	1																																																																																								4
ACAGT/ACTGT	5																																																																																									5
ACATC/ATGTG	7	2	2		1																																																																																					12
ACATG/ATGTC	2	2	1																																																																																							5
ACCAT/ATGGT	8	1																																																																																								9
ACCCC/GGGGT	2																																																																																									2
ACCCG/CGGGT				1																																																																																						1
ACCCT/AGGGT	1																																																																																									1
ACCGC/CGGTG	3																																																																																									3
ACCGG/CCGGT	1		1																																																																																							2
ACCGT/ACGGT	2																																																																																									2
ACCTC/AGGTG	3	4																																																																																								7
ACCTG/AGGTC	3																																																																																									3
ACGAT/ATCGT	4	2				1																																																																																				7
ACGTC/ACGTG	3																																																																																									3
ACTAG/AGTCT	1																																																																																									1
ACTAT/AGTAT	1																																																																																									1
ACTCG/AGTCG	1																																																																																									1
ACTGC/AGTGC	1																																																																																									1
ACTGG/AGTCC	1		1																																																																																							2
AGAGG/CCTCT	4																																																																																									4
AGATC/ATCTG	8	1	2	1																																																																																						12
AGATG/ATCTC	7	2																																																																																								9
AGCAT/ATGCT	1																																																																																									1
AGCCC/CTGGG	1																																																																																									1
AGCCG/CGGCT	1			1																																																																																						2
AGCCT/AGGCT	1																																																																																									1
AGCTC/AGCTG	2																																																																																									2
AGGAT/ATCCT	2	1																																																																																								3
AGGGG/CCCCT	8			1																																																																																						9
ATATC/ATATG	33	8	4							1	1					2																																																																										49
ATCCC/ATGGG	7	1	1		1																																																																																					10
ATCCG/ATCGG	6	2	1																																																																																							9
ATCGC/ATGCG	1	2	2																																																																																							5
AAAAAC/GTTTTT	53	7	1																																																																																							61
AAAAAG/CTTTTT	24										1																																																																															25
AAAAAT/ATTTTT	69	1																																																																																								70
AAAAGC/CTTTTG	5																																																																																									5
AAAAGG/CCTTTT	3	1			1																																																																																					5
AAAAGT/ACTTTT	1																																																																																									1
AAAATC/ATTTTG	1																																																																																									1
AAAATG/ATTTTC	9																																																																																									9
AAAATT/AATTTT	47	1																																																																																								48
AAACAC/GTGTTT	4			1																																																																																						5
AAACAG/CTGTTT	1																																																																																									1
AAACAT/ATGTTT	1																																																																																									1
AAACCG/CGGTTT	1																																																																																									1
AAACTC/AGTTTG	1																																																																																									1
AAAGAC/CTTTGT		1																																																																																								1
AAAGAG/CTCTTT	27	4		1																																																																																						32
AAAGCT/AGCTTT	1																																																																																									1
AAAGGG/CCCTTT	1																																																																																									1
AAAGGT/ACCTTT	1																																																																																									1
AAAGTC/ACTTTG		1																																																																																								1
AAAGTG/ACTTTC	2																																																																																									2
AAATAC/ATTTGT	1																																																																																									1
AAATAT/ATATTT	2																																																																																									2
AAATCG/ATTTCG	1																																																																																									1
AAATGC/ATTTGC	1																																																																																									1
AAATGG/ATTTCC	5																																																																																									5
AAATTC/AATTTG	9	1																																																																																								10
AAATTG/AATTTC	21																																																																																									21
AAATTT/AAATTT	30	1																																																																																								31
AACAAG/CTTGTT	2	1																																																																																								3
AACAAT/ATTGTT	18	1		1																																																																																						20
AACACC/GGTGTT	2	1																																																																																								3
AACAGC/CTGTTG	12	9												1																																																																												22
AACAGT/ACTGTT	1																																																																																									1
AACATC/ATGTTG	4	1		1		1																																																																																				7
AACCAC/GGTTGT	2																																																																																									2
AACCAT/ATGGTT	1																																																																																									1
AACCTC/AGGTTG	1																																																																																									1
AACGAG/CGTTCT	2																																																																																									2
AACGAT/ATCGTT		1																																																																																								1
AACGTG/ACGTTC	1																																																																																									1
AACTAC/AGTTGT	6				1	1							1																																																																													9
AACTAG/AGTTCT	1																																																																																									1
AACTCG/AGTTCG	5																																																																																									5
AACTGC/AGTTGC	2																																																																																									2
AACTGG/AGTTCC	1																																																																																									1
AACTTC/AAGTTG	1																																																																																									1
AACTTG/AAGTTC	1																																																																																									1
AAGAAT/ATTCTT	2																																																																																									2
AAGACG/CGTCTT	2																																																																																									2
AAGAGG/CCTCTT	3										1																																																																															4
AAGAGT/ACTCTT	1																																																																																									1
AAGATG/ATCTTC	6																																																																																									6
AAGATT/AATCTT	1																																																																																									1
AAGCAC/CTTGTG			1																																																																																							1
AAGCCT/AGGCTT	6	3																																																																																								9
AAGCGG/CCGCTT	1																																																																																									1
AAGCTC/AGCTTG	1																																																																																									1
AAGCTT/AAGCTT	1																																																																																									1
AAGGAG/CCTTCT	2																																																																																									2
AAGGGG/CCCCTT	1																																																																																									1
AAGGGT/ACCCTT	1																																																																																									1
AAGGTG/ACCTTC		1																																																																																								1
AAGTAG/ACTTCT	1																																																																																									1
AAGTGT/ACACTT	1																																																																																									1
AATACT/AGTATT		1																																																																																								1
AATAGC/ATTGCT	2																																																																																									2
AATAGG/ATTCCT	1																																																																																									1
AATAGT/ACTATT	5	3																																																																																								8
AATATC/ATATTG	1																																																																																									1
AATATG/ATATTC	1																																																																																									1
AATATT/AATATT	1																																																																																									1
AATCAG/ATTCTG	3																																																																																									3
AATCAT/ATGATT	5			1																																																																																						6
AATCCT/AGGATT	1																																																																																									1
AATCGG/ATTCCG	1																																																																																									1
AATCGT/ACGATT		1																																																																																								1
AATGAC/ATTGTC	1																																																																																									1
AATGAG/ATTCTC	1																																																																																									1
AATGAT/ATCATT	38	3	2			1																																																																																				44
AATGCT/AGCATT	2																																																																																									2
AATGGC/ATTGCC	2																																																																																									2
AATGTG/ACATTC	1	1																																																																																								2
AATTAC/AATTGT	3		1																																																																																							4
AATTAG/AATTCT	1																																																																																									1
AATTAT/AATTAT	2																																																																																									2
AATTCC/AATTGG	2																																																																																									2
AATTCG/AATTCG	1																																																																																									1
ACACAG/CTGTGT	17	2	1	1																																																																																						21
ACACAT/ATGTGT	115	18	8	3	3	1		3	1																																																																																	152
ACACCC/GGGTGT	1	1																																																																																								2
ACACCG/CGGTGT	1																																																																																									1
ACACCT/AGGTGT	1	1	1																																																																																							3
ACACGC/CGTGTG	3	1																																																																																								4
ACACGT/ACGTGT	1																																																																																									1
ACACTG/AGTGTC	1																																																																																									1
ACAGAG/CTCTGT	2																																																																																									2
ACAGCC/CTGTGG			1																																																																																							1
ACAGTG/ACTGTC	1																																																																																									1
ACATAT/ATATGT	8	1		1																																																																																						10
ACATGC/ATGTGC	2		1	1																																																																																						4
ACCACT/AGTGGT	2			1	1																																																																																					4
ACCAGC/CTGGTG	3																																																																																									3
ACCATC/ATGGTG	5		1				1																																																																																			7
ACCCAT/ATGGGT	2																																																																																									2
ACCCGT/ACGGGT	1																																																																																									1
ACCCTG/AGGGTC	1																																																																																									1
ACCGCC/CGGTGG	1																																																																																									1
ACCTAT/AGGTAT		1																																																																																								1
ACCTCC/AGGTGG		1	1	1																																																																																						3
ACCTCT/AGAGGT	3																																																																																									3
ACGACT/AGTCGT	1																																																																																									1
ACGAGG/CCTCGT	2																																																																																									2
ACGATC/ATCGTG		1																																																																																								1
ACGATG/ATCGTC	5																																																																																									5
ACGGCC/CCGTGG	1																																																																																									1
ACTAGC/AGTGCT	1																																																																																									1
ACTAGT/ACTAGT	2																																																																																									2
ACTATC/AGTGAT	5	2	1																																																																																							8
ACTCTC/AGAGTG	4																																																																																									4
ACTGCG/AGTCGC	2																																																																																									2
ACTGCT/AGCAGT	19	5	1	1						1				1																																																																												28
AGAGAT/ATCTCT		1																																																																																								1
AGAGCG/CGCTCT	1																																																																																									1
AGAGGC/CCTCTG	1																																																																																									1
AGAGGG/CCCTCT	10	3																																																																																								13
AGATAT/ATATCT	7																																																																																									7
AGATGC/ATCTGC	2																																																																																									2
AGCATC/ATGCTG	3																																																																																									3
AGCGGC/CCGCTG	4																																																																																									4
AGCTCC/AGCTGG	1																																																																																									1
AGCTGC/AGCTGC	3	2																																																																																								5
AGGATC/ATCCTG			1																																																																																							1
AGGATG/ATCCTC	1																																																																																									1
AGGGGG/CCCCCT	4																																																																																									4
ATCATG/ATCATG	1																																																																																									1
ATCGCC/ATGGCG	1																																																																																									1
