Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_013146145.1/fasta/hub_GCA_013146145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              662
Total size of examined sequences (bp):           41454132
Total number of identified SSRs:                 3501
Number of SSR containing sequences:              216
Number of sequences containing more than 1 SSR:  133
Number of SSRs present in compound formation:    294


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	258
2	755
3	574
4	387
5	901
6	626

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	23	18	17	6	11	8	2	4	4	2	5	1	1	1	1		1			1			1				2										1		1	1							1												1	1															1		1																																									1							118
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	4	1	1								1			1																																																																																																														9
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2		1	1				1	1								1				1																																										1																																																													9
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	24	8	13	12	10	3	11	6	4	4	3	3	2	1			2	1						1	1			1				1	2		1		1	1					2			1							1							1																																																																1	122
AC	-	-	-	10	5	4	2	1	1	1	2	1		1	1						1		1																																																																																																																							31
AG	-	-	-	30	12	9	10	2	3	2		2	2	2		1										1																																																																																																																				76
AT	-	-	-	106	29	22	10	8	4	4	1	1	2			1																																																																																																																														188
CA	-	-	-	7	5	2		3	1	2							1		1		1			1																																																																																																																						24
CT	-	-	-	9	9	4	4	3	3	1	1	1	1				1																																																																																																																													37
GA	-	-	-	19	8	5	1	5		2	1		2	1	1	1			1																																																																																																																											47
GC	-	-	-	4																																																																																																																																										4
GT	-	-	-	9	6	2	2		1	2		1				1	1						1																																																																																																																							26
TA	-	-	-	102	57	20	19	8	4	5	5	2		1																																																																																																																																223
TC	-	-	-	22	15	5	7	5	3	3	3	3							1																																																																																																																											67
TG	-	-	-	9	2	1	1	2		3	2	2	1	1	1	2		2	2		1																																																																																																																									32
AAC	-	-	5	1			1																																																																																																																																							7
AAG	-	-	12	2	2				2			1	1																																																																																																																																	20
AAT	-	-	13	9	4	1	1			2			1							1																																																																																																																										32
ACA	-	-	5	3	2																																																																																																																																									10
ACC	-	-	3	1																																																																																																																																										4
ACT	-	-				2					1	1																																																																																																																																		4
AGA	-	-	9	2	4	1	1	1		1	1	1											1								1																																																																																																															23
AGC	-	-	5	3	2																																																																																																																																									10
AGG	-	-	2	2			1																																																																																																																																							5
AGT	-	-	3					1	4										1																																																																																																																											9
ATA	-	-	8	4	1	1					1														1																																																																																																																					16
ATC	-	-	3	1	1	3			1		1																																																																																																																																			10
ATG	-	-	1		1	1	1																																																																																																																																							4
ATT	-	-	8	4	3	1	2					1		1																																																																																																																																20
CAA	-	-	4	2	1				1		1	1																																																																																																																																		10
CAC	-	-	2	3		1		1																																																																																																																																						7
CAG	-	-	11	3	2		2																																																																																																																																							18
CAT	-	-	4	4	1		1			1	1																																																																																																																																			12
CCA	-	-	5	1	1																																																																																																																																									7
CCG	-	-	1																																																																																																																																											1
CCT	-	-	2	1							1																																																																																																																																			4
CGA	-	-	3																																																																																																																																											3
CGC	-	-		1																																																																																																																																										1
CGG	-	-	1	2																																																																																																																																										3
CGT	-	-	1												1																																																																																																																															2
CTA	-	-	1		1	1			1								1			1																																																																																																																										6
CTC	-	-	4							1								1																																																																																																																												6
CTG	-	-	5	1	1		1	1	1																																																																																																																																					10
CTT	-	-	15	9	4	2	1						1																																																																																																																																	32
GAA	-	-	9	1	1	1	1	1																																																																																																																																						14
GAC	-	-	4																																																																																																																																											4
GAG	-	-	2	3		1				1																																																																																																																																				7
GAT	-	-	9	2	1	1	1																																																																																																																																							14
GCA	-	-	2	2	1	1																																																																																																																																								6
GCC	-	-	5	1		1	1																																																																																																																																							8
GCG	-	-	2																																																																																																																																											2
GCT	-	-	2	1																																																																																																																																										3
GGA	-	-	5	1																																																																																																																																										6
GGC	-	-	3	3																																																																																																																																										6
GGT	-	-	5	1																																																																																																																																										6
GTA	-	-	1				1			1				1	2						1																1																																																																																																									8
GTC	-	-	2		1																																																																																																																																									3
GTG	-	-	3			1																																																																																																																																								4
GTT	-	-	5	2	1		1	1																																																																																																																																						10
TAA	-	-	9	7	4		1					1																																																																																																																																		22
TAC	-	-	3	3						1		1	1																								1																																																																																																									10
TAG	-	-	3	2			1																																																																																																																																							6
TAT	-	-	13	5		1	1	1		1																																																																																																																																				22
TCA	-	-	5	4	1		1																																																																																																																																							11
TCC	-	-	3	1			1																																																																																																																																							5
TCG	-	-	6	1						1																																																																																																																																				8
TCT	-	-	11	1			2			1					1																																																																																																																															16
TGA	-	-	5	2	1	1								1																																																																																																																																10
TGC	-	-	5	1	3	1																																																																																																																																								10
TGG	-	-	4	1		1																																																																																																																																								6
TGT	-	-	3	1				1																																																																																																																																						5
TTA	-	-	16	6					2																																																																																																																																					24
TTC	-	-	5	3	3	1	1			1																	1																																																																																																																			15
TTG	-	-	1	5																	1																																																																																																																									7
AAAC	-			1																																																																																																																																										1
AAAG	-	17	8	1			1						1																																																																																																																																	28
AAAT	-	32	3	3																																																																																																																																										38
AACA	-	1																																																																																																																																												1
AAGA	-	4				1																																																																																																																																								5
AAGC	-	1																																																																																																																																												1
AATA	-	5	1	1																																																																																																																																										7
AATC	-	2	2																																																																																																																																											4
AATG	-	1	1																																																																																																																																											2
AATT	-	3																																																																																																																																												3
ACAA	-	1																																																																																																																																												1
ACAT	-	4	2																																																																																																																																											6
ACCA	-	1																																																																																																																																												1
ACGG	-	1																																																																																																																																												1
ACTC	-	2																																																																																																																																												2
AGAA	-	2	3	1	1				1																																																																																																																																					8
AGAC	-	2																																																																																																																																												2
AGAT	-		1																																																																																																																																											1
AGTC	-	1																																																																																																																																												1
ATAA	-	3	2	1																																																																																																																																										6
ATAC	-	4	1		1																																																																																																																																									6
ATAG	-	1																																																																																																																																												1
ATCA	-	4	1	1		1																																																																																																																																								7
ATGA	-		2																																																																																																																																											2
ATGT	-	5	1	1																																																																																																																																										7
ATTA	-	1	1																																																																																																																																											2
ATTC	-	2																																																																																																																																												2
ATTT	-	5	1																																																																																																																																											6
CAAA	-	1																																																																																																																																												1
CAAT	-	1	1	1	1																																																																																																																																									4
CAGA	-		1																																																																																																																																											1
CAGG	-	1																																																																																																																																												1
CAGT	-	1																																																																																																																																												1
CATA	-	2		1																																																																																																																																										3
CATC	-	1																																																																																																																																												1
CATT	-	1	1		1																																																																																																																																									3
CCAA	-	2																																																																																																																																												2
CCAT	-	1			1																																																																																																																																									2
CGCT	-		1																																																																																																																																											1
CTAC	-	1																																																																																																																																												1
CTAT	-		1																																																																																																																																											1
CTCA	-	1	1																																																																																																																																											2
CTGC	-		1																																																																																																																																											1
CTTC	-								1																																																																																																																																					1
CTTT	-	4	3		1																																																																																																																																									8
GAAA	-	4	1	1																																																																																																																																										6
GAAG	-	1																																																																																																																																												1
GAAT	-	2	1																																																																																																																																											3
GAGC	-	1																																																																																																																																												1
GAGG	-	1	1																																																																																																																																											2
GATA	-	1																																																																																																																																												1
GATT	-	1																																																																																																																																												1
GCCT	-	1																																																																																																																																												1
GCTT	-	2																																																																																																																																												2
GGAG	-	2																																																																																																																																												2
GGAT	-	1																																																																																																																																												1
GTAG	-	1			1																																																																																																																																									2
GTAT	-	6	1		1																																																																																																																																									8
GTCT	-	1																																																																																																																																												1
GTGA	-	1					1																																																																																																																																							2
GTTA	-	1																																																																																																																																												1
GTTT	-		1																																																																																																																																											1
TAAA	-	4	1																																																																																																																																											5
TAAC	-	1																																																																																																																																												1
TAAT	-	2																																																																																																																																												2
TACA	-	12	1	2	2		1																																																																																																																																							18
TACC	-	1																																																																																																																																												1
TAGA	-	4	1																																																																																																																																											5
TATC	-	3																																																																																																																																												3
TATG	-	3	1																																																																																																																																											4
TATT	-	6	2																																																																																																																																											8
TCAA	-	3	1	1	1																																																																																																																																									6
TCAC	-	1	2																																																																																																																																											3
TCAT	-		1		1																																																																																																																																									2
TCGG	-	1																																																																																																																																												1
TCTA	-	2	1																																																																																																																																											3
TCTG	-	1																																																																																																																																												1
TCTT	-	5	2	2		1								1																																																																																																																																11
TGAA	-	2																																																																																																																																												2
TGAG	-	2																																																																																																																																												2
TGAT	-	2		1		1																																																																																																																																								4
TGCC	-	1																																																																																																																																												1
TGGA	-	1																																																																																																																																												1
TGGT	-	1																																																																																																																																												1
TGTA	-	4	2	2	2																																																																																																																																									10
TGTT	-	1																																																																																																																																												1
TTAA	-	1																																																																																																																																												1
TTAT	-	6	2																																																																																																																																											8
TTCA	-	2																																																																																																																																												2
TTCC	-	2																																																																																																																																												2
TTCT	-	2	1																																																																																																																																											3
TTGA	-	3	4	4	2																																																																																																																																									13
TTGT	-	2																																																																																																																																												2
TTTA	-	9	3																																																																																																																																											12
TTTC	-	15	7	4																																																																																																																																										26
AAAAC		1																																																																																																																																												1
AAAAG	40	11	10	2	1																																																																																																																																									64
AAAAT	32	7	1						1																																																																																																																																					41
AAACA	1																																																																																																																																													1
AAACC	1																																																																																																																																													1
AAACG	1																																																																																																																																													1
AAAGA	13	3	2	1																																																																																																																																										19
AAAGG	2																																																																																																																																													2
AAATA	14	4	1																																																																																																																																											19
AAATG	4																																																																																																																																													4
AAATT	4																																																																																																																																													4
AACAA	1																																																																																																																																													1
AACAT	1																																																																																																																																													1
AACCA	1																																																																																																																																													1
AACCC	1																																																																																																																																													1
AACTA	2																																																																																																																																													2
AACTC	1																																																																																																																																													1
AAGAA	15	4																																																																																																																																												19
AAGAC	1																																																																																																																																													1
AAGGA	1																																																																																																																																													1
AAGGG	1	1																																																																																																																																												2
AATAA	8	2																																																																																																																																												10
AATAG	1																																																																																																																																													1
AATAT	4																																																																																																																																													4
AATGT	1																																																																																																																																													1
AATTA	3	1																																																																																																																																												4
AATTC	3																																																																																																																																													3
AATTG	1																																																																																																																																													1
AATTT	3																																																																																																																																													3
ACAAA			1																																																																																																																																											1
ACAGC	1																																																																																																																																													1
ACAGG		1																																																																																																																																												1
ACATG	1																																																																																																																																													1
ACCAC		1																																																																																																																																												1
ACCAG	2																																																																																																																																													2
ACCCT	1																																																																																																																																													1
ACCGA	1																																																																																																																																													1
ACCTG	2																																																																																																																																													2
ACGAC	1																																																																																																																																													1
ACGAG	1																																																																																																																																													1
ACTAG	1																																																																																																																																													1
ACTAT	2																																																																																																																																													2
ACTTG	1																																																																																																																																													1
AGAAA	19	5																																																																																																																																												24
AGAAG	5																																																																																																																																													5
AGAGA	2																																																																																																																																													2
AGAGG	2																																																																																																																																													2
AGATA	1																																																																																																																																													1
AGATG	1	1																																																																																																																																												2
AGATT	2																																																																																																																																													2
AGCAA	1																																																																																																																																													1
AGCTG	1																																																																																																																																													1
AGGAA	1																																																																																																																																													1
AGGAG	2																																																																																																																																													2
AGGGG	1																																																																																																																																													1
AGGGT	1																																																																																																																																													1
AGGTT	6																																																																																																																																													6
AGTAA	1																																																																																																																																													1
AGTAC	1																																																																																																																																													1
AGTAG	1																																																																																																																																													1
AGTAT	1																																																																																																																																													1
AGTTT	1																																																																																																																																													1
ATAAA	15																																																																																																																																													15
ATAAT	3																																																																																																																																													3
ATACC	1																																																																																																																																													1
ATACT	1																																																																																																																																													1
ATAGA	1	1																																																																																																																																												2
ATAGG	1																																																																																																																																													1
ATATA	3																																																																																																																																													3
ATATT	8																																																																																																																																													8
ATCAC	1																																																																																																																																													1
ATCAG	1																																																																																																																																													1
ATCAT	1																																																																																																																																													1
ATCCA	1																																																																																																																																													1
ATCCC	1																																																																																																																																													1
ATCTA	2	1																																																																																																																																												3
ATCTC	3																																																																																																																																													3
ATCTT	1																																																																																																																																													1
ATGCA	1																																																																																																																																													1
ATGCT	1																																																																																																																																													1
ATGGG	1																																																																																																																																													1
ATGTA	1																																																																																																																																													1
ATTAA	3																																																																																																																																													3
ATTAG	1																																																																																																																																													1
ATTAT	4																																																																																																																																													4
ATTCA	1																																																																																																																																													1
ATTCT	1																																																																																																																																													1
ATTGA	1																																																																																																																																													1
ATTTA	3																																																																																																																																													3
ATTTC	2																																																																																																																																													2
ATTTG	2																																																																																																																																													2
ATTTT	17	2	3																																																																																																																																											22
CAAAA	2																																																																																																																																													2
CAAAC	1																																																																																																																																													1
CAAAT	2																																																																																																																																													2
CAAGA	1																																																																																																																																													1
CAATA	1																																																																																																																																													1
CAATG	1																																																																																																																																													1
CACGC	1																																																																																																																																													1
CACTC	1																																																																																																																																													1
CACTG	1																																																																																																																																													1
CAGAC	1																																																																																																																																													1
CAGCC	1																																																																																																																																													1
CAGGT	2																																																																																																																																													2
CAGTA	1																																																																																																																																													1
CAGTT	1																																																																																																																																													1
CATAA	1																																																																																																																																													1
CATAT	3																																																																																																																																													3
CATCT	1																																																																																																																																													1
CATTC	1																																																																																																																																													1
CATTT	2																																																																																																																																													2
CCAAC	1																																																																																																																																													1
CCACA	2																																																																																																																																													2
CCACG	1																																																																																																																																													1
CCAGT	1																																																																																																																																													1
CCATT	1																																																																																																																																													1
CCCAA	2																																																																																																																																													2
CCCAT	1																																																																																																																																													1
CCCTT	1																																																																																																																																													1
CCGAG	1																																																																																																																																													1
CCGCG	1																																																																																																																																													1
CCGTA	1																																																																																																																																													1
CCGTG	1																																																																																																																																													1
CCTCA	1																																																																																																																																													1
CCTCT	1																																																																																																																																													1
CCTTC	3																																																																																																																																													3
CGAAC	1																																																																																																																																													1
CGATA	1																																																																																																																																													1
CGATG	1																																																																																																																																													1
CGCGA	1																																																																																																																																													1
CGCTT	1																																																																																																																																													1
CGTGG	1																																																																																																																																													1
CGTGT			1																																																																																																																																											1
CTAAA	1																																																																																																																																													1
CTAAC	1																																																																																																																																													1
CTACA	1																																																																																																																																													1
CTATC	1																																																																																																																																													1
CTCAG	1																																																																																																																																													1
CTCAT	1																																																																																																																																													1
CTCCC	2																																																																																																																																													2
CTCCG	1																																																																																																																																													1
CTCGA	1																																																																																																																																													1
CTCTT	3																																																																																																																																													3
CTGTA	1	1																																																																																																																																												2
CTGTC	1																																																																																																																																													1
CTTCC	2																																																																																																																																													2
CTTGT	1	1																																																																																																																																												2
CTTTC	2	1																																																																																																																																												3
CTTTG	2																																																																																																																																													2
CTTTT	16	1	1																																																																																																																																											18
GAAAA	17	2	1																																																																																																																																											20
GAAAC		1																																																																																																																																												1
GAAAG	4	1																																																																																																																																												5
GAAAT	1																																																																																																																																													1
GAACA	1																																																																																																																																													1
GAAGG	2																																																																																																																																													2
GAATA	1																																																																																																																																													1
GAATT	1																																																																																																																																													1
GACAA	1																																																																																																																																													1
GACTA	1																																																																																																																																													1
GACTG	1																																																																																																																																													1
GAGAA	1																																																																																																																																													1
GAGAG	2																																																																																																																																													2
GAGGG	3																																																																																																																																													3
GAGTC	1																																																																																																																																													1
GATAT	1																																																																																																																																													1
GATCT	1																																																																																																																																													1
GATTA	3																																																																																																																																													3
GATTG	1																																																																																																																																													1
GCAGT	1																																																																																																																																													1
GCATG	1																																																																																																																																													1
GCCGA	1																																																																																																																																													1
GCGAT	1																																																																																																																																													1
GCGGG	1																																																																																																																																													1
GCTTT	2																																																																																																																																													2
GGAAT	2																																																																																																																																													2
GGAGG	2																																																																																																																																													2
GGATT	1																																																																																																																																													1
GGCAA		1																																																																																																																																												1
GGGAT	3																																																																																																																																													3
GGGCT	1																																																																																																																																													1
GGGTG	1																																																																																																																																													1
GGGTT	1																																																																																																																																													1
GGTAG	1																																																																																																																																													1
GGTAT	2																																																																																																																																													2
GGTCT	1																																																																																																																																													1
GGTTA	5	1																																																																																																																																												6
GTAAC	1																																																																																																																																													1
GTACA	1	1																																																																																																																																												2
GTACC	1																																																																																																																																													1
GTACT	1																																																																																																																																													1
GTATA	2																																																																																																																																													2
GTCAT		1																																																																																																																																												1
GTCCT	1																																																																																																																																													1
GTCGA		1																																																																																																																																												1
GTCTA	1																																																																																																																																													1
GTTGG	2																																																																																																																																													2
GTTGT	1																																																																																																																																													1
GTTTA	1																																																																																																																																													1
TAAAA	7	1	1																																																																																																																																											9
TAAAT	8																																																																																																																																													8
TAACC	9																																																																																																																																													9
TAATA	4																																																																																																																																													4
TAATC	2																																																																																																																																													2
TAATT	3																																																																																																																																													3
TACAG	3																																																																																																																																													3
TACAT	1																																																																																																																																													1
TACCA	1	1																																																																																																																																												2
TACCT	1																																																																																																																																													1
TACGG	1																																																																																																																																													1
TAGCA	1																																																																																																																																													1
TAGCT	1																																																																																																																																													1
TAGGA	1																																																																																																																																													1
TAGTA	2																																																																																																																																													2
TAGTC	1																																																																																																																																													1
TATAA	1																																																																																																																																													1
TATAC	1																																																																																																																																													1
TATAG	1																																																																																																																																													1
TATAT	5																																																																																																																																													5
TATGC	1																																																																																																																																													1
TATGG	1																																																																																																																																													1
TATTA	2																																																																																																																																													2
TATTC	1																																																																																																																																													1
TATTT	7	3																																																																																																																																												10
TCAAA	1																																																																																																																																													1
TCACC	2																																																																																																																																													2
TCAGC	2																																																																																																																																													2
TCATC	1																																																																																																																																													1
TCCAA		1																																																																																																																																												1
TCCCC	2																																																																																																																																													2
TCCTC	1																																																																																																																																													1
TCCTG	1																																																																																																																																													1
TCGCC	1																																																																																																																																													1
TCTCT	4																																																																																																																																													4
TCTTC	2	1																																																																																																																																												3
TCTTT	9	1																																																																																																																																												10
TGAAA	2																																																																																																																																													2
TGAAT	1																																																																																																																																													1
TGACA	1																																																																																																																																													1
TGAGC	1																																																																																																																																													1
TGATA	1	1																																																																																																																																												2
TGATT	2																																																																																																																																													2
TGCAT	1	1																																																																																																																																												2
TGCCT	1																																																																																																																																													1
TGGCT	1																																																																																																																																													1
TGGTT	1																																																																																																																																													1
TGTAC	3	1																																																																																																																																												4
TGTAT	1																																																																																																																																													1
TGTCG	1																																																																																																																																													1
TGTCT	1																																																																																																																																													1
TGTTG	1																																																																																																																																													1
TGTTT	2																																																																																																																																													2
TTAAA	2																																																																																																																																													2
TTAAT	2																																																																																																																																													2
TTAGG		1																																																																																																																																												1
TTATA	1																																																																																																																																													1
TTATC	2																																																																																																																																													2
TTATT	22		1																																																																																																																																											23
TTCAA	1																																																																																																																																													1
TTCAC	1																																																																																																																																													1
TTCAG		1																																																																																																																																												1
TTCAT	1																																																																																																																																													1
TTCCA	1																																																																																																																																													1
TTCCC	1																																																																																																																																													1
TTCCT	1																																																																																																																																													1
TTCTT	14	2	2																																																																																																																																											18
TTGAA	3																																																																																																																																													3
TTGCA	1	1																																																																																																																																												2
TTGCT	1	1																																																																																																																																												2
TTGGG		1																																																																																																																																												1
TTGGT	2																																																																																																																																													2
TTGTC	1																																																																																																																																													1
TTGTT	1																																																																																																																																													1
TTTAA	3																																																																																																																																													3
TTTAG	1	1																																																																																																																																												2
TTTAT	16	6	2																																																																																																																																											24
TTTCA	2																																																																																																																																													2
TTTCC	4		2																																																																																																																																											6
TTTCG						1																																																																																																																																								1
TTTCT	10	3	3																																																																																																																																											16
TTTGA	1																																																																																																																																													1
TTTGG	1																																																																																																																																													1
TTTGT	1																																																																																																																																													1
TTTTA	20	6																																																																																																																																												26
TTTTC	39	12	4	2							1																																																																																																																																			58
TTTTG	4																																																																																																																																													4
AAAAAG	16	3	3						1																																																																																																																																					23
AAAAAT	10	8	1		1																																																																																																																																									20
AAAACA	2																																																																																																																																													2
AAAAGA	4	1	1																																																																																																																																											6
AAAAGG	2																																																																																																																																													2
AAAATA	12		1																																																																																																																																											13
AAAATG	1	1																																																																																																																																												2
AAAATT		1																																																																																																																																												1
AAAGAA	1																																																																																																																																													1
AAAGAG	1																																																																																																																																													1
AAAGTG	1																																																																																																																																													1
AAATAA	6																																																																																																																																													6
AAATGA	1	1																																																																																																																																												2
AAATTA	5																																																																																																																																													5
AACCCA	1	1																																																																																																																																												2
AACCCC	1																																																																																																																																													1
AACGCC	1																																																																																																																																													1
AAGAAA	2		1																																																																																																																																											3
AAGAAC	1																																																																																																																																													1
AAGAGA	1																																																																																																																																													1
AAGCAA		1																																																																																																																																												1
AAGGAA	1																																																																																																																																													1
AAGTAA	1																																																																																																																																													1
AATAAA	2																																																																																																																																													2
AATATT	2	1																																																																																																																																												3
AATGAG	1																																																																																																																																													1
AATGTA		1																																																																																																																																												1
AATTAA	1																																																																																																																																													1
AATTAT	3																																																																																																																																													3
AATTTT	1																																																																																																																																													1
ACAAGA		1																																																																																																																																												1
ACAATC	1																																																																																																																																													1
ACACAA			1																																																																																																																																											1
ACACGG	1																																																																																																																																													1
ACCCAT		1																																																																																																																																												1
ACCGTG	1																																																																																																																																													1
ACGACC	1																																																																																																																																													1
ACGATG	1																																																																																																																																													1
ACGGGC		1																																																																																																																																												1
ACGTCA	1																																																																																																																																													1
AGAAAA	4																																																																																																																																													4
AGAAGG	1																																																																																																																																													1
AGAGAC	1																																																																																																																																													1
AGAGCC				1																																																																																																																																										1
AGCACT	1																																																																																																																																													1
AGCCGC	1																																																																																																																																													1
AGGAGA	1																																																																																																																																													1
AGGGTC	1																																																																																																																																													1
AGGTGG			1																																																																																																																																											1
AGGTTC	1																																																																																																																																													1
AGTACC	1																																																																																																																																													1
AGTATA	1																																																																																																																																													1
ATAAAA	4																																																																																																																																													4
ATAATC	1																																																																																																																																													1
ATAATT	1																																																																																																																																													1
ATATAG		1																																																																																																																																												1
ATATCT	1																																																																																																																																													1
ATATTA	2	1																																																																																																																																												3
ATCAAA	1																																																																																																																																													1
ATCCGC	1																																																																																																																																													1
ATCGTG	1																																																																																																																																													1
ATCTAA		1																																																																																																																																												1
ATCTAT	3																																																																																																																																													3
ATGAAA	1																																																																																																																																													1
ATGACC	1																																																																																																																																													1
ATGATT	1																																																																																																																																													1
ATGCCA	2																																																																																																																																													2
ATTAAA	2																																																																																																																																													2
ATTAAT	1																																																																																																																																													1
ATTCTC		1																																																																																																																																												1
ATTTAA		2																																																																																																																																												2
ATTTAG	2																																																																																																																																													2
ATTTCC	1																																																																																																																																													1
ATTTTA	4	1																																																																																																																																												5
ATTTTT	2																																																																																																																																													2
CAAAAG	1																																																																																																																																													1
CAACAC	1																																																																																																																																													1
CAACAG		1																																																																																																																																												1
CAACAT	2																																																																																																																																													2
CAAGAT	1																																																																																																																																													1
CACAAA	1	1																																																																																																																																												2
CACATT	1																																																																																																																																													1
CACCAA	1																																																																																																																																													1
CACCAT	1																																																																																																																																													1
CACGGC	1																																																																																																																																													1
CACTCT	1																																																																																																																																													1
CAGAAG	1																																																																																																																																													1
CAGCAA	2																																																																																																																																													2
CAGCCG	1																																																																																																																																													1
CAGCGC	1																																																																																																																																													1
CAGCTC	1																																																																																																																																													1
CAGCTT	1																																																																																																																																													1
CAGGAA	1																																																																																																																																													1
CAGGAC	1																																																																																																																																													1
CAGGCT	1	1																																																																																																																																												2
CAGTAA	1																																																																																																																																													1
CAGTGG	2																																																																																																																																													2
CAGTTT	1																																																																																																																																													1
CATCAA		1																																																																																																																																												1
CATCAG	2																																																																																																																																													2
CATCCT		1																																																																																																																																												1
CATCGG	1																																																																																																																																													1
CATCTT	1																																																																																																																																													1
CATGCT	1																																																																																																																																													1
CCAAAG	1																																																																																																																																													1
CCAATT	1																																																																																																																																													1
CCACAA	1																																																																																																																																													1
CCACGG	1																																																																																																																																													1
CCAGAC	1																																																																																																																																													1
CCAGAG	1																																																																																																																																													1
CCAGCA	1																																																																																																																																													1
CCAGCT	2																																																																																																																																													2
CCAGGT	1																																																																																																																																													1
CCATTA	1																																																																																																																																													1
CCCAAA	1																																																																																																																																													1
CCCCAC	1																																																																																																																																													1
CCCCCT	1																																																																																																																																													1
CCCCTC	1																																																																																																																																													1
CCGAAG	1																																																																																																																																													1
CCGCCA	1																																																																																																																																													1
CCGCCT	1																																																																																																																																													1
CCTCAC	1																																																																																																																																													1
CCTCCA	1																																																																																																																																													1
CCTCCG	1																																																																																																																																													1
CCTCTT		1																																																																																																																																												1
CCTGCC	1																																																																																																																																													1
CCTGCG	1																																																																																																																																													1
CCTGCT	1																																																																																																																																													1
CCTTGT	1																																																																																																																																													1
CCTTTG	1																																																																																																																																													1
CCTTTT	1																																																																																																																																													1
CGAAGC	1																																																																																																																																													1
CGACTC	1																																																																																																																																													1
CGATCC	1																																																																																																																																													1
CGCACA	1																																																																																																																																													1
CGCAGC		1																																																																																																																																												1
CGCTGC	1																																																																																																																																													1
CGGCGC	1																																																																																																																																													1
CGGCTG	1																																																																																																																																													1
CGGGTT	1																																																																																																																																													1
CGGTCT	1																																																																																																																																													1
CGTCGG	2																																																																																																																																													2
CGTCTA	1																																																																																																																																													1
CGTGAT	1																																																																																																																																													1
CGTGGC	1																																																																																																																																													1
CGTGGT	1																																																																																																																																													1
CTCACC	1																																																																																																																																													1
CTCACT	1																																																																																																																																													1
CTCATC	2																																																																																																																																													2
CTCTCA	1																																																																																																																																													1
CTCTGA	1																																																																																																																																													1
CTCTTC		1																																																																																																																																												1
CTGAAC	1																																																																																																																																													1
CTGACT	1																																																																																																																																													1
CTGATT	1																																																																																																																																													1
CTGCCA	1																																																																																																																																													1
CTGCCG		1																																																																																																																																												1
CTGCTC	2																																																																																																																																													2
CTGGTT	1																																																																																																																																													1
CTGTTG	1		1																																																																																																																																											2
CTTCCC	1																																																																																																																																													1
CTTCTA	1																																																																																																																																													1
CTTCTC	3																																																																																																																																													3
CTTTTT	4																																																																																																																																													4
GAAAAA	3	2		1																																																																																																																																										6
GAAAAT	1																																																																																																																																													1
GAAAGA	1																																																																																																																																													1
GAAGTG	1																																																																																																																																													1
GAATTA	1																																																																																																																																													1
GACAAG	1																																																																																																																																													1
GACAGC	2																																																																																																																																													2
GACGAT	2																																																																																																																																													2
GACGCA	1																																																																																																																																													1
GACTAC	1																																																																																																																																													1
GACTGC			1																																																																																																																																											1
GAGAAA	3																																																																																																																																													3
GAGAAG	1																																																																																																																																													1
GAGCCA	3																																																																																																																																													3
GAGCCC		1																																																																																																																																												1
GAGCGC	1																																																																																																																																													1
GAGGAA	3																																																																																																																																													3
GAGGAC	2																																																																																																																																													2
GAGGAT	2																																																																																																																																													2
GAGGGA	1																																																																																																																																													1
GAGGGC	1																																																																																																																																													1
GAGTTG	1																																																																																																																																													1
GATAGG	1																																																																																																																																													1
GATCGA	1																																																																																																																																													1
GATCGC	1																																																																																																																																													1
GATGAA	2																																																																																																																																													2
GATGAC	1																																																																																																																																													1
GATGAG	1																																																																																																																																													1
GATTGG		1																																																																																																																																												1
GCACAT		1																																																																																																																																												1
GCACCT	1																																																																																																																																													1
GCAGCG	1																																																																																																																																													1
GCCACC	1																																																																																																																																													1
GCCGCT		1																																																																																																																																												1
GCCTCG	1																																																																																																																																													1
GCCTGG	1																																																																																																																																													1
GCGATG	1																																																																																																																																													1
GCGGCA	1																																																																																																																																													1
GCGGCT	1																																																																																																																																													1
GCGGGG	1																																																																																																																																													1
GCTAGA	1																																																																																																																																													1
GCTCAT		1																																																																																																																																												1
GCTCTG					1																																																																																																																																									1
GCTGCA	2																																																																																																																																													2
GCTGGA	1																																																																																																																																													1
GCTGTG	1																																																																																																																																													1
GCTTTG	1																																																																																																																																													1
GCTTTT	1																																																																																																																																													1
GGAAAT	1																																																																																																																																													1
GGAAGA	1																																																																																																																																													1
GGACGC	1																																																																																																																																													1
GGAGAG	1																																																																																																																																													1
GGAGCC	1	1																																																																																																																																												2
GGAGGC	1																																																																																																																																													1
GGAGGG	1																																																																																																																																													1
GGATGG	1																																																																																																																																													1
GGATTC	1																																																																																																																																													1
GGATTT	1																																																																																																																																													1
GGCAAC	1																																																																																																																																													1
GGCACA	1																																																																																																																																													1
GGCGGT	1																																																																																																																																													1
GGCTCC	1																																																																																																																																													1
GGCTCG		1																																																																																																																																												1
GGCTCT	1																																																																																																																																													1
GGCTGC	2																																																																																																																																													2
GGCTTT	1																																																																																																																																													1
GGGGTA	1																																																																																																																																													1
GGGGTT	1																																																																																																																																													1
GGGTTG	1																																																																																																																																													1
GGTCAC	1																																																																																																																																													1
GGTGTC	1																																																																																																																																													1
GGTGTG	1																																																																																																																																													1
GGTTCT	1	1																																																																																																																																												2
GTAAAA	1																																																																																																																																													1
GTACGG	2																																																																																																																																													2
GTAGTG				1																																																																																																																																										1
GTATGT	1																																																																																																																																													1
GTCGTG	3	2																																																																																																																																												5
GTCTAC	1																																																																																																																																													1
GTCTCC	1																																																																																																																																													1
GTCTTA	1																																																																																																																																													1
GTGAAC	1																																																																																																																																													1
GTGCTC	1																																																																																																																																													1
GTGCTT	1																																																																																																																																													1
GTGGTT		1																																																																																																																																												1
GTGTTA	1																																																																																																																																													1
GTGTTG	1																																																																																																																																													1
GTTCTT	1																																																																																																																																													1
GTTGCA	1																																																																																																																																													1
GTTGTC	1																																																																																																																																													1
GTTTTT	1																																																																																																																																													1
TAAAAA		1																																																																																																																																												1
TAAATC	1																																																																																																																																													1
TAAGAA	1																																																																																																																																													1
TAATAT	2																																																																																																																																													2
TAATTA	1																																																																																																																																													1
TAATTT	2																																																																																																																																													2
TACTAT	1																																																																																																																																													1
TAGAAA	1																																																																																																																																													1
TAGACA	1																																																																																																																																													1
TAGATA		1																																																																																																																																												1
TATAAA	1																																																																																																																																													1
TATAAT	1																																																																																																																																													1
TATAGT	1																																																																																																																																													1
TATCAC	1																																																																																																																																													1
TATCGC	1																																																																																																																																													1
TATCTA	4																																																																																																																																													4
TATCTT		1																																																																																																																																												1
TATGCA	1																																																																																																																																													1
TATTAA	2																																																																																																																																													2
TATTCC	1																																																																																																																																													1
TATTTT	2	2																																																																																																																																												4
TCAAAA	1																																																																																																																																													1
TCAACA	1																																																																																																																																													1
TCAGGC			1																																																																																																																																											1
TCAGGG	1																																																																																																																																													1
TCATCC	1																																																																																																																																													1
TCATCG	1																																																																																																																																													1
TCCAGC	3																																																																																																																																													3
TCCATC	2																																																																																																																																													2
TCCCAA		1																																																																																																																																												1
TCCCCT							1																																																																																																																																							1
TCCCGT	1																																																																																																																																													1
TCCCTC	2																																																																																																																																													2
TCCTCA		1																																																																																																																																												1
TCCTCT	2																																																																																																																																													2
TCCTTC	1																																																																																																																																													1
TCGCAA	1																																																																																																																																													1
TCGCCC	1																																																																																																																																													1
TCGGCA	1																																																																																																																																													1
TCGGGA	1																																																																																																																																													1
TCGGGT	1																																																																																																																																													1
TCGTCA	2																																																																																																																																													2
TCGTCC	1																																																																																																																																													1
TCGTGG	1					1																																																																																																																																								2
TCGTGT	1																																																																																																																																													1
TCGTTG	1																																																																																																																																													1
TCTACT	1																																																																																																																																													1
TCTCCT		1																																																																																																																																												1
TCTCGC	2																																																																																																																																													2
TCTGAC	1																																																																																																																																													1
TCTGAG	1	1																																																																																																																																												2
TCTGCA	1																																																																																																																																													1
TCTGGC	1																																																																																																																																													1
TCTGTA		1																																																																																																																																												1
TCTGTT		1																																																																																																																																												1
TCTTCA		1																																																																																																																																												1
TCTTCC	1	1																																																																																																																																												2
TCTTCG	2																																																																																																																																													2
TCTTGT	1																																																																																																																																													1
TCTTTC	1																																																																																																																																													1
TCTTTG	1																																																																																																																																													1
TCTTTT	4																																																																																																																																													4
TGAATG	1																																																																																																																																													1
TGACAT	1																																																																																																																																													1
TGACCA	1																																																																																																																																													1
TGACGA		1																																																																																																																																												1
TGACTA	1																																																																																																																																													1
TGAGCG	1																																																																																																																																													1
TGAGGA	1																																																																																																																																													1
TGAGGT	1																																																																																																																																													1
TGAGTA	1																																																																																																																																													1
TGATTC		1																																																																																																																																												1
TGCATA	1																																																																																																																																													1
TGCCCT	1																																																																																																																																													1
TGCGGT	1																																																																																																																																													1
TGCTGT	1																																																																																																																																													1
TGCTTC		1																																																																																																																																												1
TGCTTG	1																																																																																																																																													1
TGGCAT	1																																																																																																																																													1
TGGCGT	1																																																																																																																																													1
TGGCTG		1																																																																																																																																												1
TGGTAG	1																																																																																																																																													1
TGGTCG		1																																																																																																																																												1
TGGTCT	1																																																																																																																																													1
TGGTGA	1																																																																																																																																													1
TGGTGT	1																																																																																																																																													1
TGGTTC	1																																																																																																																																													1
TGTACA	1																																																																																																																																													1
TGTGAA	1																																																																																																																																													1
TGTGAC	1																																																																																																																																													1
TGTGTA		1																																																																																																																																												1
TGTGTT	1																																																																																																																																													1
TGTTGC	1		1																																																																																																																																											2
TGTTGG	2																																																																																																																																													2
TGTTTT	2																																																																																																																																													2
TTAAAT	1																																																																																																																																													1
TTAATA	1																																																																																																																																													1
TTATTG		1																																																																																																																																												1
TTATTT	5	1																																																																																																																																												6
TTCAGA	1																																																																																																																																													1
TTCATA	1																																																																																																																																													1
TTCCTC	1																																																																																																																																													1
TTCCTG	1																																																																																																																																													1
TTCGTC		1																																																																																																																																												1
TTCTCA	1																																																																																																																																													1
TTCTGG	1																																																																																																																																													1
TTCTTG	1	1																																																																																																																																												2
TTCTTT	5	1																																																																																																																																												6
TTGAGG	1																																																																																																																																													1
TTGATA		1																																																																																																																																												1
TTGATT	2																																																																																																																																													2
TTGCTT	1																																																																																																																																													1
TTGGAA	1																																																																																																																																													1
TTGGAG	1																																																																																																																																													1
TTGGTG	1																																																																																																																																													1
TTGTTA	1																																																																																																																																													1
TTTAAT	1																																																																																																																																													1
TTTAGA	1																																																																																																																																													1
TTTATC	1																																																																																																																																													1
TTTATT	7	2		1																																																																																																																																										10
TTTCCC	1																																																																																																																																													1
TTTCCG	1																																																																																																																																													1
TTTCTC	1																																																																																																																																													1
TTTCTT	6						1																																																																																																																																							7
TTTTAA	1																																																																																																																																													1
TTTTAT	5	1	1																																																																																																																																											7
TTTTCA	1																																																																																																																																													1
TTTTCC	1	1																																																																																																																																												2
TTTTCT	5	3																																																																																																																																												8
TTTTGC	3																																																																																																																																													3
TTTTTA	11	2	1																																																																																																																																											14
TTTTTC	12	6																																																																																																																																												18
TTTTTG	1																																																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	47	26	30	18	21	11	13	10	8	6	8	4	3	2	1		3	1		1			1	1	1		2	1				1	2		1		2	1	1	1			2			1	1						1						1	2															1		1																																									1						1	240
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	6	1	2	1				1	1		1			1			1				1																																										1																																																													18
AC/GT	-	-	-	35	18	9	5	6	3	8	4	4	1	2	2	3	2	2	3		3		2	1																																																																																																																						113
AG/CT	-	-	-	80	44	23	22	15	9	8	5	6	5	3	1	2	1		2							1																																																																																																																				227
AT/AT	-	-	-	208	86	42	29	16	8	9	6	3	2	1		1																																																																																																																														411
CG/CG	-	-	-	4																																																																																																																																										4
AAC/GTT	-	-	23	14	4		2	2	1		1	1									1																																																																																																																									49
AAG/CTT	-	-	61	18	14	5	6	2	2	3	1	2	2		1								1				1				1																																																																																																															120
AAT/ATT	-	-	67	35	12	4	5	1	2	3	1	2	1	1						1					1																																																																																																																					136
ACC/GGT	-	-	22	7	1	3		1																																																																																																																																						34
ACG/CGT	-	-	16	1	1					1					1																																																																																																																															20
ACT/AGT	-	-	11	5	1	3	2	1	5	2	1	2	1	1	2		1		1	1	1																2																																																																																																									43
AGC/CTG	-	-	30	11	9	2	3	1	1																																																																																																																																					57
AGG/CCT	-	-	18	8		1	2			2	1							1																																																																																																																												33
ATC/ATG	-	-	27	13	6	6	4		1	1	2			1																																																																																																																																61
CCG/CGG	-	-	12	7		1	1																																																																																																																																							21
AAAC/GTTT	-	6	1	1																																																																																																																																										8
AAAG/CTTT	-	53	25	9	2	2	1		1				1	1																																																																																																																																95
AAAT/ATTT	-	70	15	5																																																																																																																																										90
AACC/GGTT	-	4																																																																																																																																												4
AACT/AGTT	-	2																																																																																																																																												2
AAGC/CTTG	-	3																																																																																																																																												3
AAGG/CCTT	-	3							1																																																																																																																																					4
AATC/ATTG	-	16	9	8	4	2																																																																																																																																								39
AATG/ATTC	-	10	6		2																																																																																																																																									18
AATT/AATT	-	7	1																																																																																																																																											8
ACAG/CTGT	-	4	1																																																																																																																																											5
ACAT/ATGT	-	40	9	6	6		1																																																																																																																																							62
ACCG/CGGT	-	1																																																																																																																																												1
ACCT/AGGT	-	3			1																																																																																																																																									4
ACGG/CCGT	-	1																																																																																																																																												1
ACTC/AGTG	-	7	3				1																																																																																																																																							11
ACTG/AGTC	-	2																																																																																																																																												2
AGAT/ATCT	-	11	4																																																																																																																																											15
AGCG/CGCT	-	1	1																																																																																																																																											2
AGGC/CCTG	-	3	1																																																																																																																																											4
AGGG/CCCT	-	3	1																																																																																																																																											4
ATCC/ATGG	-	4			1																																																																																																																																									5
AAAAC/GTTTT	12	1	1																																																																																																																																											14
AAAAG/CTTTT	192	44	23	5	1						1																																																																																																																																			266
AAAAT/ATTTT	158	31	9						1																																																																																																																																					199
AAACC/GGTTT	7																																																																																																																																													7
AAACG/CGTTT	1	1				1																																																																																																																																								3
AAACT/AGTTT	6	1																																																																																																																																												7
AAAGC/CTTTG	6	1																																																																																																																																												7
AAAGG/CCTTT	15	2	2																																																																																																																																											19
AAAGT/ACTTT	1																																																																																																																																													1
AAATC/ATTTG	8																																																																																																																																													8
AAATG/ATTTC	14																																																																																																																																													14
AAATT/AATTT	34	1																																																																																																																																												35
AACAC/GTGTT	2																																																																																																																																													2
AACAG/CTGTT	1																																																																																																																																													1
AACAT/ATGTT	2																																																																																																																																													2
AACCC/GGGTT	7	1																																																																																																																																												8
AACCG/CGGTT	2																																																																																																																																													2
AACCT/AGGTT	21	2																																																																																																																																												23
AACGT/ACGTT	1																																																																																																																																													1
AACTC/AGTTG	1																																																																																																																																													1
AACTG/AGTTC	1	1																																																																																																																																												2
AAGAC/CTTGT	6	1																																																																																																																																												7
AAGAG/CTCTT	17	1																																																																																																																																												18
AAGAT/ATCTT	4																																																																																																																																													4
AAGCC/CTTGG	1																																																																																																																																													1
AAGCG/CGCTT	1																																																																																																																																													1
AAGCT/AGCTT	1																																																																																																																																													1
AAGGC/CCTTG	1	1																																																																																																																																												2
AAGGG/CCCTT	10	1																																																																																																																																												11
AAGGT/ACCTT	1																																																																																																																																													1
AAGTC/ACTTG	1																																																																																																																																													1
AAGTG/ACTTC	1																																																																																																																																													1
AATAC/ATTGT	2																																																																																																																																													2
AATAG/ATTCT	5	1																																																																																																																																												6
AATAT/ATATT	35																																																																																																																																													35
AATCC/ATTGG	3	1																																																																																																																																												4
AATCT/AGATT	10	1																																																																																																																																												11
AATGC/ATTGC	4	2																																																																																																																																												6
AATGG/ATTCC	5																																																																																																																																													5
AATGT/ACATT	3																																																																																																																																													3
AATTC/AATTG	12																																																																																																																																													12
ACACC/GGTGT	2	1																																																																																																																																												3
ACACG/CGTGT	2		1																																																																																																																																											3
ACACT/AGTGT	1																																																																																																																																													1
ACAGC/CTGTG	1																																																																																																																																													1
ACAGG/CCTGT	3	1																																																																																																																																												4
ACAGT/ACTGT	11	3																																																																																																																																												14
ACATC/ATGTG	1																																																																																																																																													1
ACATG/ATGTC	2	1																																																																																																																																												3
ACCAG/CTGGT	4																																																																																																																																													4
ACCAT/ATGGT	5	1																																																																																																																																												6
ACCCC/GGGGT	1																																																																																																																																													1
ACCCT/AGGGT	3																																																																																																																																													3
ACCGT/ACGGT	3																																																																																																																																													3
ACCTC/AGGTG	3																																																																																																																																													3
ACCTG/AGGTC	4																																																																																																																																													4
ACGAG/CGTCT	1																																																																																																																																													1
ACGAT/ATCGT	1																																																																																																																																													1
ACGCC/CGTGG	3																																																																																																																																													3
ACGCG/CGCGT	1																																																																																																																																													1
ACGGC/CCGTG	1																																																																																																																																													1
ACTAG/AGTCT	4																																																																																																																																													4
ACTAT/AGTAT	10																																																																																																																																													10
ACTCC/AGTGG	1																																																																																																																																													1
ACTCG/AGTCG	2	1																																																																																																																																												3
ACTCT/AGAGT	1																																																																																																																																													1
ACTGC/AGTGC	2																																																																																																																																													2
ACTGG/AGTCC	2																																																																																																																																													2
AGAGG/CCTCT	8																																																																																																																																													8
AGATC/ATCTG	2																																																																																																																																													2
AGATG/ATCTC	7	1																																																																																																																																												8
AGCAT/ATGCT	3																																																																																																																																													3
AGCCC/CTGGG	2																																																																																																																																													2
AGCCG/CGGCT	2																																																																																																																																													2
AGCGG/CCGCT	1																																																																																																																																													1
AGCTC/AGCTG	5																																																																																																																																													5
AGGAT/ATCCT	3																																																																																																																																													3
AGGCG/CCTCG	1																																																																																																																																													1
AGGGG/CCCCT	10																																																																																																																																													10
ATATC/ATATG	6	1																																																																																																																																												7
ATCCC/ATGGG	6																																																																																																																																													6
ATCGC/ATGCG	2																																																																																																																																													2
ATGCC/ATGGC	1																																																																																																																																													1
CCCCG/CGGGG	1																																																																																																																																													1
CCGCG/CGCGG	1																																																																																																																																													1
AAAAAC/GTTTTT	6																																																																																																																																													6
AAAAAG/CTTTTT	66	16	5	1			1		1																																																																																																																																					90
AAAAAT/ATTTTT	66	17	4	1	1																																																																																																																																									89
AAAAGC/CTTTTG	6	1																																																																																																																																												7
AAAAGG/CCTTTT	5	1																																																																																																																																												6
AAAAGT/ACTTTT	2																																																																																																																																													2
AAAATC/ATTTTG	4																																																																																																																																													4
AAAATG/ATTTTC	5	2																																																																																																																																												7
AAAATT/AATTTT	17	2																																																																																																																																												19
AAACAC/GTGTTT	2	1	1																																																																																																																																											4
AAACAG/CTGTTT		1																																																																																																																																												1
AAACCC/GGGTTT	2	1																																																																																																																																												3
AAACGG/CCGTTT	1																																																																																																																																													1
AAACTG/AGTTTC	1																																																																																																																																													1
AAAGAC/CTTTGT	1																																																																																																																																													1
AAAGAG/CTCTTT	8																																																																																																																																													8
AAAGAT/ATCTTT	1	1																																																																																																																																												2
AAAGCC/CTTTGG	3																																																																																																																																													3
AAAGGC/CCTTTG	1																																																																																																																																													1
AAAGGG/CCCTTT	1																																																																																																																																													1
AAAGTG/ACTTTC	1																																																																																																																																													1
AAATAG/ATTTCT	1																																																																																																																																													1
AAATAT/ATATTT	1																																																																																																																																													1
AAATCC/ATTTGG	1																																																																																																																																													1
AAATCT/AGATTT	4	1																																																																																																																																												5
AAATGG/ATTTCC	2																																																																																																																																													2
AAATGT/ACATTT		1																																																																																																																																												1
AAATTT/AAATTT	1	2																																																																																																																																												3
AACAAG/CTTGTT	4	2																																																																																																																																												6
AACAAT/ATTGTT	1	1																																																																																																																																												2
AACACC/GGTGTT	7																																																																																																																																													7
AACACG/CGTGTT	1																																																																																																																																													1
AACACT/AGTGTT	1																																																																																																																																													1
AACAGC/CTGTTG	5	1	2																																																																																																																																											8
AACAGG/CCTGTT	2																																																																																																																																													2
AACAGT/ACTGTT	1																																																																																																																																													1
AACATC/ATGTTG	3	1																																																																																																																																												4
AACCAC/GGTTGT	1	1																																																																																																																																												2
AACCAG/CTGGTT	4	1																																																																																																																																												5
AACCCC/GGGGTT	3																																																																																																																																													3
AACCCG/CGGGTT	2																																																																																																																																													2
AACCGC/CGGTTG	1																																																																																																																																													1
AACCTC/AGGTTG	2																																																																																																																																													2
AACCTG/AGGTTC	2																																																																																																																																													2
AACGAC/CGTTGT	2																																																																																																																																													2
AACGCC/CGTTGG	2																																																																																																																																													2
AACGGC/CCGTTG	1																																																																																																																																													1
AACGGG/CCCGTT	1																																																																																																																																													1
AACGTC/ACGTTG	1																																																																																																																																													1
AACGTG/ACGTTC	1																																																																																																																																													1
AACTAT/AGTTAT	1																																																																																																																																													1
AACTCC/AGTTGG	2																																																																																																																																													2
AACTGC/AGTTGC	1																																																																																																																																													1
AAGAAT/ATTCTT	1																																																																																																																																													1
AAGACC/CTTGGT	1																																																																																																																																													1
AAGACG/CGTCTT	2	1																																																																																																																																												3
AAGACT/AGTCTT	1																																																																																																																																													1
AAGAGG/CCTCTT	8	3																																																																																																																																												11
AAGATC/ATCTTG	1																																																																																																																																													1
AAGATG/ATCTTC	3	1																																																																																																																																												4
AAGCAC/CTTGTG	2																																																																																																																																													2
AAGCAG/CTGCTT	1	1																																																																																																																																												2
AAGCCG/CGGCTT	2																																																																																																																																													2
AAGCTG/AGCTTC	1																																																																																																																																													1
AAGGAC/CCTTGT	2																																																																																																																																													2
AAGGAG/CCTTCT	7	1																																																																																																																																												8
AAGGGC/CCCTTG	1																																																																																																																																													1
AAGGGG/CCCCTT	1						1																																																																																																																																							2
AAGTAG/ACTTCT	2																																																																																																																																													2
AAGTAT/ACTTAT	1																																																																																																																																													1
AAGTGG/ACTTCC	1																																																																																																																																													1
AATAGG/ATTCCT	1																																																																																																																																													1
AATAGT/ACTATT	1																																																																																																																																													1
AATATC/ATATTG		1																																																																																																																																												1
AATATG/ATATTC	1																																																																																																																																													1
AATATT/AATATT	10	2																																																																																																																																												12
AATCAC/ATTGTG	1																																																																																																																																													1
AATCAG/ATTCTG	1	1																																																																																																																																												2
AATCAT/ATGATT	2																																																																																																																																													2
AATCCC/ATTGGG		2																																																																																																																																												2
AATCCG/ATTCGG	1																																																																																																																																													1
AATCGC/ATTGCG	1																																																																																																																																													1
AATCTG/AGATTC	1																																																																																																																																													1
AATGAG/ATTCTC	2	1																																																																																																																																												3
AATGCC/ATTGGC	3																																																																																																																																													3
AATGGT/ACCATT	1																																																																																																																																													1
AATGTC/ACATTG	1																																																																																																																																													1
AATGTG/ACATTC	3																																																																																																																																													3
AATTAG/AATTCT	1																																																																																																																																													1
AATTAT/AATTAT	6																																																																																																																																													6
AATTCC/AATTGG	2																																																																																																																																													2
ACACAT/ATGTGT	1	1																																																																																																																																												2
ACACCC/GGGTGT	1																																																																																																																																													1
ACACCG/CGGTGT	1																																																																																																																																													1
ACACGC/CGTGTG	1																																																																																																																																													1
ACACGG/CCGTGT	1																																																																																																																																													1
ACAGAG/CTCTGT	1																																																																																																																																													1
ACAGAT/ATCTGT		1																																																																																																																																												1
ACAGCC/CTGTGG	1	1																																																																																																																																												2
ACAGCG/CGCTGT	2																																																																																																																																													2
ACAGGC/CCTGTG	1																																																																																																																																													1
ACAGTC/ACTGTG	1																																																																																																																																													1
ACATAG/ATGTCT	1																																																																																																																																													1
ACATGC/ATGTGC		1																																																																																																																																												1
ACATGT/ACATGT	1																																																																																																																																													1
ACCACG/CGTGGT	6	3				1																																																																																																																																								10
ACCACT/AGTGGT	1			1																																																																																																																																										2
ACCAGC/CTGGTG	1																																																																																																																																													1
ACCAGG/CCTGGT	1																																																																																																																																													1
ACCAGT/ACTGGT	1																																																																																																																																													1
ACCATC/ATGGTG	2																																																																																																																																													2
ACCATG/ATGGTC	2																																																																																																																																													2
ACCCAG/CTGGGT	1																																																																																																																																													1
ACCCAT/ATGGGT		1																																																																																																																																												1
ACCCCC/GGGGGT	1																																																																																																																																													1
ACCCCT/AGGGGT	1																																																																																																																																													1
ACCCGT/ACGGGT	2																																																																																																																																													2
ACCCTC/AGGGTG	2																																																																																																																																													2
ACCCTG/AGGGTC	2																																																																																																																																													2
ACCGAG/CGGTCT	1																																																																																																																																													1
ACCGCC/CGGTGG	3																																																																																																																																													3
ACCGTG/ACGGTC	2																																																																																																																																													2
ACCTCC/AGGTGG	1		1																																																																																																																																											2
ACCTGC/AGGTGC	1																																																																																																																																													1
ACCTGG/AGGTCC	1																																																																																																																																													1
ACGACT/AGTCGT	1																																																																																																																																													1
ACGAGC/CGTGCT	1																																																																																																																																													1
ACGAGG/CCTCGT	3																																																																																																																																													3
ACGATC/ATCGTG	2																																																																																																																																													2
ACGATG/ATCGTC	7	1																																																																																																																																												8
ACGCAG/CGTCTG	1																																																																																																																																													1
ACGCCG/CGGCGT	2																																																																																																																																													2
ACGCGG/CCGCGT	1																																																																																																																																													1
ACGCTC/AGCGTG	1																																																																																																																																													1
ACGGAG/CCGTCT	1																																																																																																																																													1
ACGGCC/CCGTGG	3																																																																																																																																													3
ACGGGC/CCCGTG		1																																																																																																																																												1
ACGTAG/ACGTCT	2																																																																																																																																													2
ACTAGC/AGTGCT	1																																																																																																																																													1
ACTATC/AGTGAT	1																																																																																																																																													1
ACTATG/AGTCAT	1																																																																																																																																													1
ACTCAG/AGTCTG	1	1																																																																																																																																												2
ACTCAT/AGTATG	1																																																																																																																																													1
ACTCCG/AGTCGG	1																																																																																																																																													1
ACTCTC/AGAGTG	3																																																																																																																																													3
ACTCTG/AGAGTC	3																																																																																																																																													3
ACTGCC/AGTGGC	3																																																																																																																																													3
ACTGCG/AGTCGC			1																																																																																																																																											1
AGAGCC/CTCTGG	6			1	1																																																																																																																																									8
AGAGCG/CGCTCT	2																																																																																																																																													2
AGAGCT/AGCTCT	1																																																																																																																																													1
AGAGGG/CCCTCT	4																																																																																																																																													4
AGATAT/ATATCT	8	2																																																																																																																																												10
AGATCG/ATCTCG	1																																																																																																																																													1
AGATGC/ATCTGC	1																																																																																																																																													1
AGATGG/ATCTCC	2																																																																																																																																													2
AGCAGG/CCTGCT	3																																																																																																																																													3
AGCATC/ATGCTG	2																																																																																																																																													2
AGCATG/ATGCTC	1	1																																																																																																																																												2
AGCCCG/CGGGCT		2																																																																																																																																												2
AGCCGC/CGGCTG	6	1																																																																																																																																												7
AGCCGG/CCGGCT	2	1																																																																																																																																												3
AGCCTG/AGGCTC	1	1	1																																																																																																																																											3
AGCGAT/ATCGCT	1																																																																																																																																													1
AGCGCC/CGCTGG	1																																																																																																																																													1
AGCGCG/CGCGCT	1																																																																																																																																													1
AGCGGC/CCGCTG	3	2																																																																																																																																												5
AGCTCC/AGCTGG	7																																																																																																																																													7
AGCTGC/AGCTGC	2																																																																																																																																													2
AGGATG/ATCCTC	7	2																																																																																																																																												9
AGGCCC/CCTGGG	1																																																																																																																																													1
AGGCCG/CCTCGG	1																																																																																																																																													1
AGGCGC/CCTGCG	1																																																																																																																																													1
AGGCGG/CCGCCT	3																																																																																																																																													3
AGGGAT/ATCCCT	1																																																																																																																																													1
AGGGCG/CCCTCG	2																																																																																																																																													2
AGGGGC/CCCCTG	1																																																																																																																																													1
AGGGGG/CCCCCT	3																																																																																																																																													3
ATATGC/ATATGC	2																																																																																																																																													2
ATCCCC/ATGGGG	1																																																																																																																																													1
ATCCCG/ATCGGG	2																																																																																																																																													2
ATCCGC/ATGCGG	1																																																																																																																																													1
ATCGCC/ATGGCG	1																																																																																																																																													1
ATCGCG/ATCGCG	1																																																																																																																																													1
ATCGGC/ATGCCG	2																																																																																																																																													2
CCCCCG/CGGGGG	1																																																																																																																																													1
CCGGCG/CCGGCG	1																																																																																																																																													1
