Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_013146035.1/fasta/hub_GCA_013146035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              85
Total size of examined sequences (bp):           37862306
Total number of identified SSRs:                 3420
Number of SSR containing sequences:              70
Number of sequences containing more than 1 SSR:  63
Number of SSRs present in compound formation:    294


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	199
2	753
3	558
4	388
5	903
6	619

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	12	17	8	7	9	5	4	6	3		1	4			3	2						1				1			1			1	1	2						1						1																																																																						90
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2		1		1		2						1																																																																																																							7
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	2	2	2	1				1	1								1																																	1																																																																13
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	17	14	9	5	6	10	5	5	3			1	2				4	1	1	1												1	1													1													1																																																								1	89
AC	-	-	-	7	1	2					2	1	1			1												1																																																																																																									16
AG	-	-	-	24	17	18	6	5	4	4	3	1	1	1		2	1	1																																																																																																																			88
AT	-	-	-	81	24	14	15	12	4	4	2	1	4			1																																																																																																																					162
CA	-	-	-	13	9	3		1					1	1			1			2																																																																																																																	31
CG	-	-	-			1																																																																																																																															1
CT	-	-	-	16	4	8	4	2	4	1			3	1	1				1																																																																																																																		45
GA	-	-	-	23	8	4	4	1	1	1	1	2		1								1																																																																																																															47
GC	-	-	-	2																																																																																																																																	2
GT	-	-	-	10	5	1	2	1	1		1					1								1			1	1																																																																																																									25
TA	-	-	-	123	45	21	10	6	4	4	4	3		1		1																																																																																																																					222
TC	-	-	-	33	18	12	5	5	2	1	2		1	2	1																																																																																																																						82
TG	-	-	-	12	3	4	1	5	1	1	1	1		1	1	1																																																																																																																					32
AAC	-	-	3	2	1																																																																																																																																6
AAG	-	-	14	8	2	2	1	2	1																																																																																																																												30
AAT	-	-	15	6	5		1		2	1		1																																																																																																																									31
ACA	-	-	3	3	1		1																																																																																																																														8
ACC	-	-	6	1																																																																																																																																	7
ACG	-	-	1																																																																																																																																		1
ACT	-	-	3		1																																																																																																																																4
AGA	-	-	5	4	4	1								1																																																																																																																							15
AGC	-	-	2	4	1			1																																																																																																																													8
AGG	-	-	1		1	1			1				1																																																																																																																								5
AGT	-	-	1	1	2					1																												1																																																																																															6
ATA	-	-	12	6	1	3		1																																																																																																																													23
ATC	-	-	1	2																																																																																																																																	3
ATG	-	-	5	1	1																																																																																																																																7
ATT	-	-	9	3	2	1				1		1																																																																																																																									17
CAA	-	-	7	4	1																																																																																																																																12
CAC	-	-		1		1																																																																																																																															2
CAG	-	-	3	1	3	2				1																																																																																																																											10
CAT	-	-	4			1																																																																																																																															5
CCA	-	-	6			2																																																																																																																															8
CCG	-	-	4	1																																																																																																																																	5
CCT	-	-	2	1																																																																																																																																	3
CGA	-	-	2	1																																																																																																																																	3
CGC	-	-	1		1																																																																																																																																2
CGG	-	-	3			1																																																																																																																															4
CGT	-	-	2																																																																																																																																		2
CTA	-	-	3																									1																																																																																																									4
CTC	-	-	5	1	1	2																																																																																																																															9
CTG	-	-	4	1	2																																																																																																																																7
CTT	-	-	16	6	1			1	1																		1																																																																																																										26
GAA	-	-	8	3	2	1		3	1																																																																																																																												18
GAC	-	-			1																																																																																																																																1
GAG	-	-	2	2			1		1	1																																																																																																																											7
GAT	-	-	7			1	1														1																																																																																																																10
GCA	-	-	5	3	1	1																																																																																																																															10
GCC	-	-	10	4																																																																																																																																	14
GCG	-	-	2																																																																																																																																		2
GCT	-	-	1	3																																																																																																																																	4
GGA	-	-	1	1		2	1																																																																																																																														5
GGC	-	-	4																																																																																																																																		4
GGT	-	-	3	2																																																																																																																																	5
GTA	-	-	2	1								1																	1																																																																																																								5
GTC	-	-	2	1																																																																																																																																	3
GTG	-	-	2			1	1																																																																																																																														4
GTT	-	-	2	3	1	1																																																																																																																															7
TAA	-	-	12	4	2																																																																																																																																18
TAC	-	-	3	1	1																																																																																																																																5
TAG	-	-	4			1	1		2			1										1			1														1																																																																																														12
TAT	-	-	14	7	1	2	2		2																																							1																																																																																					29
TCA	-	-	6	1				1																																																																																																																													8
TCC	-	-	4	1		1		1																																																																																																																													7
TCG	-	-	1	1	1																																																																																																																																3
TCT	-	-	7	1		2	1	1					1								1																																																																																																																14
TGA	-	-	3	3	1	2																																																																																																																															9
TGC	-	-	7	1		1	1																																																																																																																														10
TGG	-	-	4			1																																																																																																																															5
TGT	-	-	7		1	4																																																																																																																															12
TTA	-	-	16	7	4	3																																																																																																																															30
TTC	-	-	5	5			2		1		2	1			1					1				1										1																																																																																																			20
TTG	-	-		3			1																																																																																																																														4
AAAC	-	1																																																																																																																																			1
AAAG	-	21	7	3	3	2	1			1																																																																																																																											38
AAAT	-	16	3	2																																																																																																																																	21
AAGA	-	4	3	1																																																																																																																																	8
AAGG	-	1																																																																																																																																			1
AATA	-	6		2																																																																																																																																	8
AATC	-	3	2	1																																																																																																																																	6
AATG	-			1																																																																																																																																	1
AATT	-	12																																																																																																																																			12
ACAT	-	3		1	1																																																																																																																																5
ACCG	-	1																																																																																																																																			1
ACTA	-	1																																																																																																																																			1
AGAA	-	6	1		1																																																																																																																																8
AGAT	-	1	1																																																																																																																																		2
AGCA	-	1																																																																																																																																			1
AGGA	-	1																																																																																																																																			1
AGTG	-	2																																																																																																																																			2
AGTT	-	1																																																																																																																																			1
ATAA	-	8	4																																																																																																																																		12
ATAC	-	5																																																																																																																																			5
ATAG	-	1	1																																																																																																																																		2
ATCA	-	3	1																																																																																																																																		4
ATCC	-	1																																																																																																																																			1
ATGA	-	1																																																																																																																																			1
ATGG	-	1																																																																																																																																			1
ATGT	-	2		1	1																																																																																																																																4
ATTA	-	1		1																																																																																																																																	2
ATTT	-	6	3		1																																																																																																																																10
CAAA	-	1																																																																																																																																			1
CACG	-		1																																																																																																																																		1
CAGT	-	1																																																																																																																																			1
CATA	-	2	1			1																																																																																																																															4
CATC	-	1	1																																																																																																																																		2
CCCT	-	2																																																																																																																																			2
CGCT	-	1																																																																																																																																			1
CTAT	-	1	1																																																																																																																																		2
CTCA	-	3																																																																																																																																			3
CTGT	-			1																																																																																																																																	1
CTTT	-	3	5	1																																																																																																																																	9
GAAA	-	7	1	1		1																																																																																																																															10
GAAG	-	2																																																																																																																																			2
GAAT	-		1																																																																																																																																		1
GACG	-		1																																																																																																																																		1
GACT	-	1																																																																																																																																			1
GAGG	-	1																																																																																																																																			1
GAGT	-	1		1																																																																																																																																	2
GATA	-	1																																																																																																																																			1
GATG	-	1																																																																																																																																			1
GATT	-	1	1																																																																																																																																		2
GCTT	-	1																																																																																																																																			1
GGCA	-	1																																																																																																																																			1
GGTA	-			1																																																																																																																																	1
GTAG	-	2	1																																																																																																																																		3
GTAT	-	5	1																																																																																																																																		6
GTGA	-	3																																																																																																																																			3
TAAA	-	11																																																																																																																																			11
TAAC	-	1																																																																																																																																			1
TAAT	-	3																																																																																																																																			3
TACA	-	5	6	1	1																																																																																																																																13
TACC	-	1																																																																																																																																			1
TACT	-	1																																																																																																																																			1
TAGA	-	2																																																																																																																																			2
TAGC	-	1																																																																																																																																			1
TATC	-								1																																																																																																																												1
TATG	-	5	1				1																																																																																																																														7
TATT	-	4																																																																																																																																			4
TCAA	-	3	2	1																																																																																																																																	6
TCAC	-	1																																																																																																																																			1
TCAT	-	4		1																																																																																																																																	5
TCCA	-	1	1																																																																																																																																		2
TCCT	-		1																																																																																																																																		1
TCTA	-	1	1																																																																																																																																		2
TCTG	-			1																																																																																																																																	1
TCTT	-	8			1																																																																																																																																9
TGAA	-	1																																																																																																																																			1
TGAC	-	1																																																																																																																																			1
TGAT	-	2	2																																																																																																																																		4
TGCA	-	1																																																																																																																																			1
TGTA	-	6	3	2	1																																																																																																																																12
TTAA	-	4																																																																																																																																			4
TTAT	-	12	1																																																																																																																																		13
TTCT	-	4	1		1																																																																																																																																6
TTGA	-	3																																																																																																																																			3
TTGG	-	1																																																																																																																																			1
TTTA	-	18	2																																																																																																																																		20
TTTC	-	10	7	6				1		1																																																																																																																											25
TTTG	-	1																																																																																																																																			1
AAAAC	4	1																																																																																																																																			5
AAAAG	42	9	5		1																																																																																																																																57
AAAAT	29	9	1				1			1																																																																																																																											41
AAAGA	14	6																																																																																																																																			20
AAAGG	5																																																																																																																																				5
AAAGT	1																																																																																																																																				1
AAATA	5	2																																																																																																																																			7
AAATC	5																																																																																																																																				5
AAATG	2																																																																																																																																				2
AAATT	11																																																																																																																																				11
AACAA	1																																																																																																																																				1
AACAC	1																																																																																																																																				1
AAGAA	10	4																																																																																																																																			14
AAGAG			1																																																																																																																																		1
AAGGA	3																																																																																																																																				3
AAGGG	1																																																																																																																																				1
AAGTG	1																																																																																																																																				1
AATAA	8	1																																																																																																																																			9
AATAC	1																																																																																																																																				1
AATAT	1	1																																																																																																																																			2
AATCC	2																																																																																																																																				2
AATGA	2																																																																																																																																				2
AATGC		1																																																																																																																																			1
AATTA	2																																																																																																																																				2
AATTC	2																																																																																																																																				2
AATTG	1																																																																																																																																				1
AATTT	2																																																																																																																																				2
ACAAC	2																																																																																																																																				2
ACACC	1																																																																																																																																				1
ACAGC	1																																																																																																																																				1
ACAGG	1																																																																																																																																				1
ACATA	1																																																																																																																																				1
ACATG	1																																																																																																																																				1
ACCAA	1																																																																																																																																				1
ACCAG	1	1																																																																																																																																			2
ACCGT	1																																																																																																																																				1
ACCTA	1																																																																																																																																				1
ACGAG	1																																																																																																																																				1
ACGCA	1																																																																																																																																				1
ACTAT	1																																																																																																																																				1
ACTGG		1																																																																																																																																			1
AGAAA	15	1																																																																																																																																			16
AGAAG	3																																																																																																																																				3
AGACA	1																																																																																																																																				1
AGACT	1																																																																																																																																				1
AGAGA	1																																																																																																																																				1
AGAGC	1																																																																																																																																				1
AGAGG	1																																																																																																																																				1
AGATG	1		1																																																																																																																																		2
AGCAA		1																																																																																																																																			1
AGCCA	1																																																																																																																																				1
AGGAA	1																																																																																																																																				1
AGGAG	1																																																																																																																																				1
AGGAT	2																																																																																																																																				2
AGGGA	1																																																																																																																																				1
AGTAC	2																																																																																																																																				2
AGTAG	1																																																																																																																																				1
AGTCA	1																																																																																																																																				1
ATAAA	9	1																																																																																																																																			10
ATAAT	1																																																																																																																																				1
ATACC	1																																																																																																																																				1
ATAGA		1																																																																																																																																			1
ATAGG	2																																																																																																																																				2
ATATA	3																																																																																																																																				3
ATATT	8																																																																																																																																				8
ATCAT	2																																																																																																																																				2
ATCCA	1																																																																																																																																				1
ATCCC	1																																																																																																																																				1
ATCTA	1																																																																																																																																				1
ATCTC	1	1																																																																																																																																			2
ATGAG	3																																																																																																																																				3
ATGAT	1																																																																																																																																				1
ATGCA	1																																																																																																																																				1
ATGGG		1																																																																																																																																			1
ATGTG	1																																																																																																																																				1
ATTAA	11		1																																																																																																																																		12
ATTAT	4																																																																																																																																				4
ATTTA	3																																																																																																																																				3
ATTTG	1																																																																																																																																				1
ATTTT	9	3	1	1																																																																																																																																	14
CAAAA	2																																																																																																																																				2
CAAAG	2																																																																																																																																				2
CAAAT	1																																																																																																																																				1
CAAGA		1																																																																																																																																			1
CAAGT	1																																																																																																																																				1
CAATA	1																																																																																																																																				1
CAATG	1																																																																																																																																				1
CACGG	1																																																																																																																																				1
CAGCC	1																																																																																																																																				1
CATAC	2																																																																																																																																				2
CATAG	1																																																																																																																																				1
CATAT	1																																																																																																																																				1
CATCT	2																																																																																																																																				2
CATGT	1																																																																																																																																				1
CATTC	1																																																																																																																																				1
CATTT	1																																																																																																																																				1
CCAAC	3																																																																																																																																				3
CCACA	1																																																																																																																																				1
CCACC	1																																																																																																																																				1
CCACG	1																																																																																																																																				1
CCATA	1																																																																																																																																				1
CCATT		1																																																																																																																																			1
CCCAT	2																																																																																																																																				2
CCCCT	2																																																																																																																																				2
CCCGA	1																																																																																																																																				1
CCCGT		1																																																																																																																																			1
CCCTC	2																																																																																																																																				2
CCCTT	2																																																																																																																																				2
CCGGT	1																																																																																																																																				1
CCGTA	1																																																																																																																																				1
CCTAT	1																																																																																																																																				1
CCTCA	1																																																																																																																																				1
CCTCC	1																																																																																																																																				1
CCTTC	1																																																																																																																																				1
CCTTT	1																																																																																																																																				1
CGAAC	1																																																																																																																																				1
CGACA	1																																																																																																																																				1
CGACT		1																																																																																																																																			1
CGATA	1																																																																																																																																				1
CGCCT	1																																																																																																																																				1
CGTCT		1																																																																																																																																			1
CGTGT			1																																																																																																																																		1
CGTTC	1																																																																																																																																				1
CTACA		1																																																																																																																																			1
CTAGT	1	1																																																																																																																																			2
CTCAG	1																																																																																																																																				1
CTCCG	1																																																																																																																																				1
CTCTC			1																																																																																																																																		1
CTCTT	1																																																																																																																																				1
CTGAA	1																																																																																																																																				1
CTGAT		1																																																																																																																																			1
CTGCC	1																																																																																																																																				1
CTGTA	1																																																																																																																																				1
CTGTC	1																																																																																																																																				1
CTTCC	2																																																																																																																																				2
CTTCT	3																																																																																																																																				3
CTTGC	1																																																																																																																																				1
CTTTC	2																																																																																																																																				2
CTTTT	18	8	1																																																																																																																																		27
GAAAA	18	2	1																																																																																																																																		21
GAAAC	1																																																																																																																																				1
GAAAG	2																																																																																																																																				2
GAAAT	2																																																																																																																																				2
GAACC	1																																																																																																																																				1
GAAGA	1																																																																																																																																				1
GAATG	1																																																																																																																																				1
GAATT	1																																																																																																																																				1
GACTT	1																																																																																																																																				1
GAGAA	1																																																																																																																																				1
GAGAC	1																																																																																																																																				1
GAGAG	1																																																																																																																																				1
GAGAT	1																																																																																																																																				1
GAGGA	2																																																																																																																																				2
GAGGG	2	1																																																																																																																																			3
GATGG	1																																																																																																																																				1
GATGT	1																																																																																																																																				1
GATTG	1																																																																																																																																				1
GCAAA	1																																																																																																																																				1
GCAAC	1																																																																																																																																				1
GCATC	1																																																																																																																																				1
GCTCA	1																																																																																																																																				1
GCTGA	1																																																																																																																																				1
GGAAA	4																																																																																																																																				4
GGAAG		1																																																																																																																																			1
GGAGA	2																																																																																																																																				2
GGATA	1																																																																																																																																				1
GGATT	1																																																																																																																																				1
GGCTC	1																																																																																																																																				1
GGCTG	1																																																																																																																																				1
GGGAA	1																																																																																																																																				1
GGGAT	1																																																																																																																																				1
GGGGT	1																																																																																																																																				1
GGGTG	1																																																																																																																																				1
GGTAG	1	1																																																																																																																																			2
GGTGT	1																																																																																																																																				1
GGTTA		1																																																																																																																																			1
GGTTC	1																																																																																																																																				1
GGTTG	1																																																																																																																																				1
GGTTT	1																																																																																																																																				1
GTACA	1																																																																																																																																				1
GTATG	2																																																																																																																																				2
GTATT	1																																																																																																																																				1
GTCAT		1																																																																																																																																			1
GTCCC	1																																																																																																																																				1
GTCTA	1																																																																																																																																				1
GTCTT	2																																																																																																																																				2
GTTGG	1																																																																																																																																				1
GTTTG	1																																																																																																																																				1
TAAAA	11		1																																																																																																																																		12
TAAAC	1																																																																																																																																				1
TAAAT	3																																																																																																																																				3
TAACA	1																																																																																																																																				1
TAATA	3																																																																																																																																				3
TAATT	8	1																																																																																																																																			9
TACAC	1																																																																																																																																				1
TACAG	2																																																																																																																																				2
TACAT	1		1																																																																																																																																		2
TACCA	1																																																																																																																																				1
TACCG		1																																																																																																																																			1
TACTG	1																																																																																																																																				1
TAGAA	1																																																																																																																																				1
TAGAT	1																																																																																																																																				1
TAGCT	1																																																																																																																																				1
TAGGT	1																																																																																																																																				1
TAGTA	1																																																																																																																																				1
TAGTC	1																																																																																																																																				1
TAGTT	2																																																																																																																																				2
TATAA	1																																																																																																																																				1
TATAC	1																																																																																																																																				1
TATAT	6																																																																																																																																				6
TATCA	2																																																																																																																																				2
TATTA	6																																																																																																																																				6
TATTT	11	2																																																																																																																																			13
TCAAC	1																																																																																																																																				1
TCAGC	1																																																																																																																																				1
TCATA	1																																																																																																																																				1
TCATC	2	1																																																																																																																																			3
TCATT		1	1																																																																																																																																		2
TCCAA	1																																																																																																																																				1
TCCCC	1																																																																																																																																				1
TCCTG	1																																																																																																																																				1
TCGCC		1																																																																																																																																			1
TCGTT		1																																																																																																																																			1
TCTAG	1																																																																																																																																				1
TCTAT	1																																																																																																																																				1
TCTCT	3	1																																																																																																																																			4
TCTTA	2																																																																																																																																				2
TCTTC	2																																																																																																																																				2
TCTTG	1																																																																																																																																				1
TCTTT	8	1	1																																																																																																																																		10
TGAAA	2																																																																																																																																				2
TGACA	1																																																																																																																																				1
TGAGA	1																																																																																																																																				1
TGAGC	2																																																																																																																																				2
TGATC		1																																																																																																																																			1
TGATG	1																																																																																																																																				1
TGATT	1		1																																																																																																																																		2
TGCAT	1	1																																																																																																																																			2
TGCTA	1																																																																																																																																				1
TGGAG	1																																																																																																																																				1
TGGAT	1																																																																																																																																				1
TGGGT	2																																																																																																																																				2
TGTAC	3																																																																																																																																				3
TGTCT	1																																																																																																																																				1
TGTGA	1																																																																																																																																				1
TGTGT	1																																																																																																																																				1
TGTTG	1																																																																																																																																				1
TGTTT	3	1																																																																																																																																			4
TTAAA	4																																																																																																																																				4
TTAAT	20																																																																																																																																				20
TTACT	1																																																																																																																																				1
TTAGT	1																																																																																																																																				1
TTATA	4	1																																																																																																																																			5
TTATT	12	1																																																																																																																																			13
TTCAT	2																																																																																																																																				2
TTCCC	1																																																																																																																																				1
TTCCT	3																																																																																																																																				3
TTCTC	1																																																																																																																																				1
TTCTT	10	6		1																																																																																																																																	17
TTGAA	1	1																																																																																																																																			2
TTGAC	1																																																																																																																																				1
TTGAG	1																																																																																																																																				1
TTGGG	1																																																																																																																																				1
TTGGT	2																																																																																																																																				2
TTGTA	1																																																																																																																																				1
TTGTT	1																																																																																																																																				1
TTTAA	7																																																																																																																																				7
TTTAG	2																																																																																																																																				2
TTTAT	27	2																																																																																																																																			29
TTTCA	1																																																																																																																																				1
TTTCC	4																																																																																																																																				4
TTTCG	1																																																																																																																																				1
TTTCT	17	7	1	2																																																																																																																																	27
TTTGA	2																																																																																																																																				2
TTTGT	1																																																																																																																																				1
TTTTA	26	8	5																																																																																																																																		39
TTTTC	45	17	4	1																																																																																																																																	67
TTTTG	1	1																																																																																																																																			2
AAAAAG	13	3	1																																																																																																																																		17
AAAAAT	21	5	1																																																																																																																																		27
AAAACA	1	1																																																																																																																																			2
AAAAGA	8	2																																																																																																																																			10
AAAAGC	1																																																																																																																																				1
AAAAGG			1																																																																																																																																		1
AAAATA	9																																																																																																																																				9
AAAATT	3																																																																																																																																				3
AAACCA			1																																																																																																																																		1
AAACCC	1																																																																																																																																				1
AAAGAA	8	1																																																																																																																																			9
AAAGAG	2	1																																																																																																																																			3
AAAGCA	1																																																																																																																																				1
AAAGGA	1																																																																																																																																				1
AAAGGT	1																																																																																																																																				1
AAAGTG	1																																																																																																																																				1
AAATAA	7																																																																																																																																				7
AAATAG	1																																																																																																																																				1
AAATGA	1																																																																																																																																				1
AACACA	1																																																																																																																																				1
AACAGG	2																																																																																																																																				2
AACCAC	1																																																																																																																																				1
AACCCC	1																																																																																																																																				1
AACCTG	1																																																																																																																																				1
AACGCC		1																																																																																																																																			1
AACTCC	1																																																																																																																																				1
AAGAAA	3		1																																																																																																																																		4
AAGAAC					1																																																																																																																																1
AAGAGG	1	1																																																																																																																																			2
AAGCCG		1																																																																																																																																			1
AAGGGA	1																																																																																																																																				1
AATAAA	3	1																																																																																																																																			4
AATACC	1																																																																																																																																				1
AATGAA	1																																																																																																																																				1
AATTAA	1																																																																																																																																				1
AATTAT	1																																																																																																																																				1
AATTTA	1																																																																																																																																				1
AATTTT	1	1																																																																																																																																			2
ACAACG	1																																																																																																																																				1
ACAACT	1																																																																																																																																				1
ACAATT	1																																																																																																																																				1
ACAGCA			1																																																																																																																																		1
ACCACT	1																																																																																																																																				1
ACCCCA	1																																																																																																																																				1
ACGACC	1																																																																																																																																				1
ACGATG	1																																																																																																																																				1
ACGTCA	1																																																																																																																																				1
ACTTGG	1																																																																																																																																				1
ACTTTG	1																																																																																																																																				1
AGAAAA	4	2																																																																																																																																			6
AGAAAG	1																																																																																																																																				1
AGACAA	1																																																																																																																																				1
AGACAC	1																																																																																																																																				1
AGACGT		1																																																																																																																																			1
AGAGAA	1																																																																																																																																				1
AGAGCC	1																																																																																																																																				1
AGAGCG	1																																																																																																																																				1
AGAGGG	1																																																																																																																																				1
AGATCG	1																																																																																																																																				1
AGCCGC	1																																																																																																																																				1
AGCGGG	1																																																																																																																																				1
AGCTCT	1																																																																																																																																				1
AGCTGC	1																																																																																																																																				1
AGGACA	1																																																																																																																																				1
AGGAGC	1																																																																																																																																				1
AGGCGA	1																																																																																																																																				1
AGGCGG	1																																																																																																																																				1
AGGGTC	1																																																																																																																																				1
AGTAGA	1																																																																																																																																				1
AGTAGC	1																																																																																																																																				1
AGTCCA	1																																																																																																																																				1
AGTTTC	1																																																																																																																																				1
ATAAAA	4																																																																																																																																				4
ATAAAG	1																																																																																																																																				1
ATAAAT	1																																																																																																																																				1
ATAATC	1																																																																																																																																				1
ATAATT	1																																																																																																																																				1
ATATAC	1																																																																																																																																				1
ATATTA	2																																																																																																																																				2
ATCATA	1																																																																																																																																				1
ATCCCC	1																																																																																																																																				1
ATCCTC	2																																																																																																																																				2
ATCGCC	1																																																																																																																																				1
ATCGTG	1																																																																																																																																				1
ATCTAC	1																																																																																																																																				1
ATGAAC	1																																																																																																																																				1
ATGACC	1																																																																																																																																				1
ATGACG	2																																																																																																																																				2
ATGAGA	1																																																																																																																																				1
ATGCTG	1																																																																																																																																				1
ATGGCT	1																																																																																																																																				1
ATGTAC	1	1																																																																																																																																			2
ATGTCT	1																																																																																																																																				1
ATTAAT	4																																																																																																																																				4
ATTATA	6																																																																																																																																				6
ATTCAC	1																																																																																																																																				1
ATTCTC	1																																																																																																																																				1
ATTTAA	2	1																																																																																																																																			3
ATTTTT	1	1																																																																																																																																			2
CAAAAG	1																																																																																																																																				1
CAAAGT		1																																																																																																																																			1
CAACAT	1																																																																																																																																				1
CACACC		1																																																																																																																																			1
CACCAA	1																																																																																																																																				1
CACCAG		1																																																																																																																																			1
CACTAC	1																																																																																																																																				1
CACTAT	2																																																																																																																																				2
CACTGC	1																																																																																																																																				1
CAGCAA	1																																																																																																																																				1
CAGCCG	1																																																																																																																																				1
CAGCTC	2																																																																																																																																				2
CAGGCC	1																																																																																																																																				1
CAGTCA	1																																																																																																																																				1
CATACA	1																																																																																																																																				1
CATACT	1																																																																																																																																				1
CATAGC	1																																																																																																																																				1
CATCAA	1																																																																																																																																				1
CATCAC	2																																																																																																																																				2
CATCCT		1																																																																																																																																			1
CATGTG	1																																																																																																																																				1
CATTTC	1	1																																																																																																																																			2
CATTTT	1																																																																																																																																				1
CCAAAC	1																																																																																																																																				1
CCAACC	1																																																																																																																																				1
CCACCT	1	1																																																																																																																																			2
CCACTG	1																																																																																																																																				1
CCATAA	1																																																																																																																																				1
CCATGT	1																																																																																																																																				1
CCCCAC	1																																																																																																																																				1
CCCCCT	2																																																																																																																																				2
CCCTCT		1																																																																																																																																			1
CCGAAC	1																																																																																																																																				1
CCGAGA	1																																																																																																																																				1
CCGATG	1																																																																																																																																				1
CCGCCA	1																																																																																																																																				1
CCGGAG	1																																																																																																																																				1
CCGTGG	2																																																																																																																																				2
CCTCAC	1																																																																																																																																				1
CCTCCG	1																																																																																																																																				1
CCTCTC		1																																																																																																																																			1
CCTCTG	1	1																																																																																																																																			2
CCTCTT	1																																																																																																																																				1
CCTGCA	1																																																																																																																																				1
CCTGCG		1																																																																																																																																			1
CCTTGC	1																																																																																																																																				1
CCTTTC	1	1																																																																																																																																			2
CCTTTT	1																																																																																																																																				1
CGAAGC	1																																																																																																																																				1
CGATAG		1																																																																																																																																			1
CGATCA	1																																																																																																																																				1
CGATCC	1																																																																																																																																				1
CGCAGC	1	1																																																																																																																																			2
CGCCTC	1																																																																																																																																				1
CGCTCA	1																																																																																																																																				1
CGGAGC	1																																																																																																																																				1
CGGCAG		1																																																																																																																																			1
CGTCCT	1																																																																																																																																				1
CGTCTC	1																																																																																																																																				1
CTAATT	1																																																																																																																																				1
CTATGA	1																																																																																																																																				1
CTCACT	1																																																																																																																																				1
CTCAGA	1																																																																																																																																				1
CTCATC	2																																																																																																																																				2
CTCGTC	1																																																																																																																																				1
CTGATA	1																																																																																																																																				1
CTGATG	1																																																																																																																																				1
CTGCTC	2																																																																																																																																				2
CTGGCA	1																																																																																																																																				1
CTGGCT	1																																																																																																																																				1
CTGGGG	1																																																																																																																																				1
CTGTTG	1																																																																																																																																				1
CTTCGT	1																																																																																																																																				1
CTTCTC	1																																																																																																																																				1
CTTGTT	1																																																																																																																																				1
CTTTCT	1																																																																																																																																				1
CTTTTA	1																																																																																																																																				1
CTTTTC	1																																																																																																																																				1
CTTTTT	2	1																																																																																																																																			3
GAAAAA	3																																																																																																																																				3
GAAAAG	2																																																																																																																																				2
GAAAAT	1																																																																																																																																				1
GAAGAC	1																																																																																																																																				1
GAAGAG	3																																																																																																																																				3
GAAGTG	1																																																																																																																																				1
GAATGG	1																																																																																																																																				1
GAATTG	1																																																																																																																																				1
GACAAC	2																																																																																																																																				2
GACAAG		1																																																																																																																																			1
GACGAG	2																																																																																																																																				2
GAGAAA	1																																																																																																																																				1
GAGCAC	1																																																																																																																																				1
GAGCCA	2																																																																																																																																				2
GAGCCC	1																																																																																																																																				1
GAGCGC	1																																																																																																																																				1
GAGGAA	4																																																																																																																																				4
GAGGAT	3																																																																																																																																				3
GAGGGA	1																																																																																																																																				1
GAGGTC	1																																																																																																																																				1
GAGTGG	1																																																																																																																																				1
GATAGG		1																																																																																																																																			1
GATATC	1																																																																																																																																				1
GATATG		1																																																																																																																																			1
GATCCC	1																																																																																																																																				1
GATCCT	1																																																																																																																																				1
GATGAA		1																																																																																																																																			1
GATGAC	1																																																																																																																																				1
GATGAG		1																																																																																																																																			1
GATGGT	2																																																																																																																																				2
GATTAT	1																																																																																																																																				1
GATTGG	1																																																																																																																																				1
GATTGT	1																																																																																																																																				1
GCAACC	1																																																																																																																																				1
GCAGGA		1																																																																																																																																			1
GCAGTA	1																																																																																																																																				1
GCCACC	1																																																																																																																																				1
GCCATT	1																																																																																																																																				1
GCCGAT	1																																																																																																																																				1
GCCGCA	1																																																																																																																																				1
GCCTGA	2		1																																																																																																																																		3
GCGATG	1																																																																																																																																				1
GCGATT	1																																																																																																																																				1
GCGCCT	1																																																																																																																																				1
GCGCGG	1																																																																																																																																				1
GCGGCA	1	1																																																																																																																																			2
GCGTCA	1																																																																																																																																				1
GCTAGA		1																																																																																																																																			1
GCTCAG	1																																																																																																																																				1
GCTGAC	1																																																																																																																																				1
GCTGGA	1																																																																																																																																				1
GCTTCT	1																																																																																																																																				1
GGAAGA	1																																																																																																																																				1
GGAAGC	1																																																																																																																																				1
GGACGC	1																																																																																																																																				1
GGAGAG	1																																																																																																																																				1
GGAGCC	1																																																																																																																																				1
GGAGCG	1																																																																																																																																				1
GGATTG	1																																																																																																																																				1
GGCATT	1																																																																																																																																				1
GGCGGT	1																																																																																																																																				1
GGCTCC	1																																																																																																																																				1
GGCTGC	1																																																																																																																																				1
GGCTGG		1																																																																																																																																			1
GGGAAA		1																																																																																																																																			1
GGGAGA	1																																																																																																																																				1
GGGTTG	1																																																																																																																																				1
GGTCCC		1																																																																																																																																			1
GGTCTT	1																																																																																																																																				1
GGTTTG	1																																																																																																																																				1
GTAGCA	1																																																																																																																																				1
GTAGTC	1																																																																																																																																				1
GTAGTG														1																																																																																																																							1
GTATAG	1																																																																																																																																				1
GTCACC	1																																																																																																																																				1
GTCATC				1																																																																																																																																	1
GTCCAT	1																																																																																																																																				1
GTCGCA	1																																																																																																																																				1
GTGGCC	1																																																																																																																																				1
GTGGTT	2																																																																																																																																				2
GTGTGC	1																																																																																																																																				1
GTGTTG	1																																																																																																																																				1
GTTCTT	1																																																																																																																																				1
GTTGAA	2																																																																																																																																				2
GTTGCA	1																																																																																																																																				1
GTTGGG	1																																																																																																																																				1
TAAAAA	5	2																																																																																																																																			7
TAATAG	1																																																																																																																																				1
TAATTA	1																																																																																																																																				1
TACACA	1																																																																																																																																				1
TACATT		1																																																																																																																																			1
TAGAAA	1																																																																																																																																				1
TAGTGG	3																																																																																																																																				3
TATAAA	1																																																																																																																																				1
TATAGT	1																																																																																																																																				1
TATATG	1																																																																																																																																				1
TATGCA	1																																																																																																																																				1
TATTAA	2																																																																																																																																				2
TATTTA	1																																																																																																																																				1
TATTTT	6	1																																																																																																																																			7
TCAGCC	1																																																																																																																																				1
TCAGGC	1																																																																																																																																				1
TCATCG	2																																																																																																																																				2
TCATTT	1																																																																																																																																				1
TCCAGC	1																																																																																																																																				1
TCCCTC	1																																																																																																																																				1
TCCCTG	2																																																																																																																																				2
TCCTCA	1																																																																																																																																				1
TCCTCT	1																																																																																																																																				1
TCGCAG	1																																																																																																																																				1
TCGCTA	1																																																																																																																																				1
TCGCTG	1																																																																																																																																				1
TCGTCA	2																																																																																																																																				2
TCGTCC	1																																																																																																																																				1
TCTACT		1																																																																																																																																			1
TCTCGA	1																																																																																																																																				1
TCTGCG	1																																																																																																																																				1
TCTGTT		1																																																																																																																																			1
TCTTCA		1																																																																																																																																			1
TCTTCG	1																																																																																																																																				1
TCTTGT	1																																																																																																																																				1
TCTTTA	1																																																																																																																																				1
TCTTTC		1																																																																																																																																			1
TCTTTT	3																																																																																																																																				3
TGAAGA	1																																																																																																																																				1
TGAATG	1																																																																																																																																				1
TGACAT	1																																																																																																																																				1
TGACGA	1																																																																																																																																				1
TGAGGA		1																																																																																																																																			1
TGATGC	1																																																																																																																																				1
TGATGT	1																																																																																																																																				1
TGCAGA	1																																																																																																																																				1
TGCCAC		1																																																																																																																																			1
TGCCCT	1																																																																																																																																				1
TGCGCT	1																																																																																																																																				1
TGCGGC	1																																																																																																																																				1
TGCTGG	1																																																																																																																																				1
TGCTGT	1		1																																																																																																																																		2
TGCTTC	1																																																																																																																																				1
TGGAGC		1																																																																																																																																			1
TGGTAG	1																																																																																																																																				1
TGGTGA	1																																																																																																																																				1
TGGTGT	1																																																																																																																																				1
TGTATG	1																																																																																																																																				1
TGTCTT	1																																																																																																																																				1
TGTGGC	1																																																																																																																																				1
TGTGGT	1																																																																																																																																				1
TGTTGC	1																																																																																																																																				1
TGTTTT	2																																																																																																																																				2
TTAAAA	3																																																																																																																																				3
TTAATA	7																																																																																																																																				7
TTAATT	2																																																																																																																																				2
TTACTA	1																																																																																																																																				1
TTAGAT	1																																																																																																																																				1
TTATAA		1																																																																																																																																			1
TTATGA	1																																																																																																																																				1
TTATTT	2																																																																																																																																				2
TTCCTG	1																																																																																																																																				1
TTCGGG	1																																																																																																																																				1
TTCTCA	1																																																																																																																																				1
TTCTCT	2																																																																																																																																				2
TTCTGC	1																																																																																																																																				1
TTCTTA	1																																																																																																																																				1
TTCTTG	1																																																																																																																																				1
TTCTTT	4	1	1																																																																																																																																		6
TTGAGG	1																																																																																																																																				1
TTGATG							1																																																																																																																														1
TTGCCA		1																																																																																																																																			1
TTGGGA	1																																																																																																																																				1
TTGGGT	1																																																																																																																																				1
TTGTAG	1																																																																																																																																				1
TTGTTA	1																																																																																																																																				1
TTTAAT	1																																																																																																																																				1
TTTAGA	1																																																																																																																																				1
TTTATT	7	1	1																																																																																																																																		9
TTTCAA	1																																																																																																																																				1
TTTCCG	1																																																																																																																																				1
TTTCCT	1																																																																																																																																				1
TTTCTT	14	1																																																																																																																																			15
TTTGGG	1																																																																																																																																				1
TTTGTT	1																																																																																																																																				1
TTTTAA	2																																																																																																																																				2
TTTTAC	1																																																																																																																																				1
TTTTAT	6	1					1																																																																																																																														8
TTTTCA	3																																																																																																																																				3
TTTTCC	1																																																																																																																																				1
TTTTCT	7	4																																																																																																																																			11
TTTTGA		1																																																																																																																																			1
TTTTGC		1	1																																																																																																																																		2
TTTTGG	1																																																																																																																																				1
TTTTTA	8	2	1																																																																																																																																		11
TTTTTC	14		2																																																																																																																																		16

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	29	31	17	12	15	15	9	11	6		1	5	2		3	2	4	1	1	1		1				1			1			2	2	2						1						2													1																																																								1	179
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2	3	2	3	1	2			1	1		1						1																																	1																																																																20
AC/GT	-	-	-	42	18	10	3	7	2	1	4	2	2	2	1	3	1			2				1			1	2																																																																																																									104
AG/CT	-	-	-	96	47	42	19	13	11	7	6	3	5	5	2	2	1	1	1			1																																																																																																															262
AT/AT	-	-	-	204	69	35	25	18	8	8	6	4	4	1		2																																																																																																																					384
CG/CG	-	-	-	2		1																																																																																																																															3
AAC/GTT	-	-	22	15	5	5	2																																																																																																																														49
AAG/CTT	-	-	55	27	9	6	4	7	4		2	1	1	1	1					1	1			1			1							1																																																																																																			123
AAT/ATT	-	-	78	33	15	9	3	1	4	2		2																																				1																																																																																					148
ACC/GGT	-	-	21	4		5	1																																																																																																																														31
ACG/CGT	-	-	8	3	2																																																																																																																																13
ACT/AGT	-	-	16	3	4	1	1		2	1		2										1			1			1	1									1	1																																																																																														36
AGC/CTG	-	-	22	13	7	4	1	1		1																																																																																																																											49
AGG/CCT	-	-	15	6	2	6	2	1	2	1			1																																																																																																																								36
ATC/ATG	-	-	26	7	2	4	1	1													1																																																																																																																42
CCG/CGG	-	-	24	5	1	1																																																																																																																															31
AAAC/GTTT	-	3																																																																																																																																			3
AAAG/CTTT	-	63	25	12	6	3	1	1		2																																																																																																																											113
AAAT/ATTT	-	81	13	4	1																																																																																																																																99
AACC/GGTT	-	1																																																																																																																																			1
AACT/AGTT	-	3																																																																																																																																			3
AAGC/CTTG	-	2																																																																																																																																			2
AAGG/CCTT	-	4	1																																																																																																																																		5
AAGT/ACTT	-	1																																																																																																																																			1
AATC/ATTG	-	15	8	2																																																																																																																																	25
AATG/ATTC	-	6	1	2																																																																																																																																	9
AATT/AATT	-	20		1																																																																																																																																	21
ACAG/CTGT	-			2																																																																																																																																	2
ACAT/ATGT	-	33	12	5	4	1	1																																																																																																																														56
ACCG/CGGT	-	1																																																																																																																																			1
ACCT/AGGT	-	3	1	1																																																																																																																																	5
ACGC/CGTG	-		1																																																																																																																																		1
ACGG/CCGT	-		1																																																																																																																																		1
ACTC/AGTG	-	10		1																																																																																																																																	11
ACTG/AGTC	-	3																																																																																																																																			3
AGAT/ATCT	-	7	4						1																																																																																																																												12
AGCG/CGCT	-	1																																																																																																																																			1
AGCT/AGCT	-	1																																																																																																																																			1
AGGC/CCTG	-	1																																																																																																																																			1
AGGG/CCCT	-	3																																																																																																																																			3
ATCC/ATGG	-	5	2																																																																																																																																		7
ATGC/ATGC	-	1																																																																																																																																			1
AAAAC/GTTTT	13	3																																																																																																																																			16
AAAAG/CTTTT	197	61	13	4	1																																																																																																																																276
AAAAT/ATTTT	147	29	8	1			1			1																																																																																																																											187
AAACC/GGTTT	5																																																																																																																																				5
AAACG/CGTTT	2	1																																																																																																																																			3
AAACT/AGTTT	6																																																																																																																																				6
AAAGC/CTTTG	3	1																																																																																																																																			4
AAAGG/CCTTT	25																																																																																																																																				25
AAAGT/ACTTT	2																																																																																																																																				2
AAATC/ATTTG	10		1																																																																																																																																		11
AAATG/ATTTC	12	1	1																																																																																																																																		14
AAATT/AATTT	71	1	1																																																																																																																																		73
AACAC/GTGTT	5																																																																																																																																				5
AACAT/ATGTT	2																																																																																																																																				2
AACCC/GGGTT	8																																																																																																																																				8
AACCG/CGGTT	3																																																																																																																																				3
AACCT/AGGTT	2	1																																																																																																																																			3
AACGC/CGTTG	2																																																																																																																																				2
AACGG/CCGTT	1																																																																																																																																				1
AACTC/AGTTG	2																																																																																																																																				2
AACTG/AGTTC	1																																																																																																																																				1
AAGAC/CTTGT	5	1																																																																																																																																			6
AAGAG/CTCTT	16	1	1																																																																																																																																		18
AAGAT/ATCTT	2																																																																																																																																				2
AAGCC/CTTGG	1																																																																																																																																				1
AAGCT/AGCTT	1																																																																																																																																				1
AAGGC/CCTTG	1																																																																																																																																				1
AAGGG/CCCTT	9	1																																																																																																																																			10
AAGTC/ACTTG	4																																																																																																																																				4
AAGTG/ACTTC	1																																																																																																																																				1
AATAC/ATTGT	4																																																																																																																																				4
AATAG/ATTCT	2	1																																																																																																																																			3
AATAT/ATATT	37	2																																																																																																																																			39
AATCC/ATTGG	7																																																																																																																																				7
AATCT/AGATT	2																																																																																																																																				2
AATGC/ATTGC	3	2																																																																																																																																			5
AATGG/ATTCC	2	1																																																																																																																																			3
AATGT/ACATT	1		1																																																																																																																																		2
AATTC/AATTG	5	1																																																																																																																																			6
ACACC/GGTGT	3																																																																																																																																				3
ACACG/CGTGT	1		1																																																																																																																																		2
ACACT/AGTGT	1	1																																																																																																																																			2
ACAGC/CTGTG	1																																																																																																																																				1
ACAGG/CCTGT	3																																																																																																																																				3
ACAGT/ACTGT	10																																																																																																																																				10
ACATC/ATGTG	4																																																																																																																																				4
ACATG/ATGTC	3	1																																																																																																																																			4
ACCAG/CTGGT	1	1																																																																																																																																			2
ACCAT/ATGGT	7																																																																																																																																				7
ACCCC/GGGGT	3																																																																																																																																				3
ACCCG/CGGGT	1																																																																																																																																				1
ACCCT/AGGGT	1	1																																																																																																																																			2
ACCGG/CCGGT	1																																																																																																																																				1
ACCGT/ACGGT	2	1																																																																																																																																			3
ACCTC/AGGTG	1																																																																																																																																				1
ACGAG/CGTCT	2	1																																																																																																																																			3
ACGAT/ATCGT	1																																																																																																																																				1
ACGCC/CGTGG	1																																																																																																																																				1
ACGGC/CCGTG	1																																																																																																																																				1
ACGGG/CCCGT	1	1																																																																																																																																			2
ACTAG/AGTCT	5	1																																																																																																																																			6
ACTAT/AGTAT	3																																																																																																																																				3
ACTCC/AGTGG	1																																																																																																																																				1
ACTCG/AGTCG		1																																																																																																																																			1
ACTCT/AGAGT	1																																																																																																																																				1
ACTGG/AGTCC		1																																																																																																																																			1
AGAGC/CTCTG	1																																																																																																																																				1
AGAGG/CCTCT	7		1																																																																																																																																		8
AGATC/ATCTG		2																																																																																																																																			2
AGATG/ATCTC	11	2	1																																																																																																																																		14
AGCAT/ATGCT	2																																																																																																																																				2
AGCCC/CTGGG	2																																																																																																																																				2
AGCCG/CGGCT	1																																																																																																																																				1
AGCGG/CCGCT	1																																																																																																																																				1
AGCTC/AGCTG	6																																																																																																																																				6
AGGAT/ATCCT	6																																																																																																																																				6
AGGCG/CCTCG	1	1																																																																																																																																			2
AGGGC/CCCTG	1																																																																																																																																				1
AGGGG/CCCCT	8	1																																																																																																																																			9
ATATC/ATATG	7																																																																																																																																				7
ATCCC/ATGGG	5	1																																																																																																																																			6
ATCGC/ATGCG	1																																																																																																																																				1
AAAAAC/GTTTTT	4	1																																																																																																																																			5
AAAAAG/CTTTTT	83	15	5																																																																																																																																		103
AAAAAT/ATTTTT	79	14	3				1																																																																																																																														97
AAAACC/GGTTTT	1		1																																																																																																																																		2
AAAAGC/CTTTTG	3	1	1																																																																																																																																		5
AAAAGG/CCTTTT	7		1																																																																																																																																		8
AAAAGT/ACTTTT	2																																																																																																																																				2
AAAATC/ATTTTG		1																																																																																																																																			1
AAAATG/ATTTTC	8																																																																																																																																				8
AAAATT/AATTTT	13	1																																																																																																																																			14
AAACAC/GTGTTT	1																																																																																																																																				1
AAACAG/CTGTTT		1																																																																																																																																			1
AAACCC/GGGTTT	5																																																																																																																																				5
AAACGG/CCGTTT	1																																																																																																																																				1
AAACTG/AGTTTC	1																																																																																																																																				1
AAAGAC/CTTTGT	2																																																																																																																																				2
AAAGAG/CTCTTT	8	2																																																																																																																																			10
AAAGAT/ATCTTT	2																																																																																																																																				2
AAAGGG/CCCTTT	2	2																																																																																																																																			4
AAAGGT/ACCTTT	1																																																																																																																																				1
AAAGTC/ACTTTG	1	1																																																																																																																																			2
AAAGTG/ACTTTC	1																																																																																																																																				1
AAATAG/ATTTCT	2																																																																																																																																				2
AAATAT/ATATTT	3																																																																																																																																				3
AAATCT/AGATTT	2																																																																																																																																				2
AAATGG/ATTTCC	1	1																																																																																																																																			2
AAATGT/ACATTT		1																																																																																																																																			1
AAATTG/AATTTC	1																																																																																																																																				1
AAATTT/AAATTT	3	1																																																																																																																																			4
AACAAG/CTTGTT	4				1																																																																																																																																5
AACAAT/ATTGTT	1																																																																																																																																				1
AACACC/GGTGTT	3																																																																																																																																				3
AACAGC/CTGTTG	4		2																																																																																																																																		6
AACAGG/CCTGTT	3																																																																																																																																				3
AACATC/ATGTTG	3						1																																																																																																																														4
AACATG/ATGTTC	1																																																																																																																																				1
AACCAC/GGTTGT	4																																																																																																																																				4
AACCAT/ATGGTT	1																																																																																																																																				1
AACCCC/GGGGTT	5																																																																																																																																				5
AACCCG/CGGGTT	2																																																																																																																																				2
AACCGC/CGGTTG	1																																																																																																																																				1
AACCTC/AGGTTG	1																																																																																																																																				1
AACCTG/AGGTTC	1																																																																																																																																				1
AACGAC/CGTTGT	3																																																																																																																																				3
AACGCC/CGTTGG		1																																																																																																																																			1
AACGTC/ACGTTG	1																																																																																																																																				1
AACTAC/AGTTGT	2																																																																																																																																				2
AACTAT/AGTTAT	1																																																																																																																																				1
AACTCC/AGTTGG	1																																																																																																																																				1
AACTGC/AGTTGC	1																																																																																																																																				1
AACTTC/AAGTTG	2																																																																																																																																				2
AAGAAT/ATTCTT	1																																																																																																																																				1
AAGACC/CTTGGT	1																																																																																																																																				1
AAGACG/CGTCTT	3																																																																																																																																				3
AAGAGG/CCTCTT	11	1																																																																																																																																			12
AAGATG/ATCTTC	1	2																																																																																																																																			3
AAGCAG/CTGCTT	3																																																																																																																																				3
AAGCCG/CGGCTT	1	1																																																																																																																																			2
AAGCGC/CGCTTG	1																																																																																																																																				1
AAGCGG/CCGCTT	1																																																																																																																																				1
AAGGAC/CCTTGT	1	1																																																																																																																																			2
AAGGAG/CCTTCT	1																																																																																																																																				1
AAGGCG/CCTTCG	1																																																																																																																																				1
AAGGGC/CCCTTG	2																																																																																																																																				2
AAGTAG/ACTTCT	1	1																																																																																																																																			2
AAGTCC/ACTTGG	2																																																																																																																																				2
AAGTGG/ACTTCC	1																																																																																																																																				1
AATACC/ATTGGT	1																																																																																																																																				1
AATAGT/ACTATT	2																																																																																																																																				2
AATATT/AATATT	15																																																																																																																																				15
AATCAC/ATTGTG	1																																																																																																																																				1
AATCAT/ATGATT	4																																																																																																																																				4
AATCCC/ATTGGG	3																																																																																																																																				3
AATCGC/ATTGCG	1																																																																																																																																				1
AATGAG/ATTCTC	3																																																																																																																																				3
AATGCC/ATTGGC	1																																																																																																																																				1
AATGGC/ATTGCC	1	1																																																																																																																																			2
AATGGG/ATTCCC	1																																																																																																																																				1
AATGTC/ACATTG	1																																																																																																																																				1
AATGTG/ACATTC	2																																																																																																																																				2
AATTAC/AATTGT	1																																																																																																																																				1
AATTAG/AATTCT	1																																																																																																																																				1
AATTAT/AATTAT	9	1																																																																																																																																			10
AATTCC/AATTGG	1																																																																																																																																				1
ACACAG/CTGTGT	1																																																																																																																																				1
ACACAT/ATGTGT	3																																																																																																																																				3
ACACCC/GGGTGT		1																																																																																																																																			1
ACACGC/CGTGTG	1																																																																																																																																				1
ACAGCC/CTGTGG	1																																																																																																																																				1
ACAGCG/CGCTGT	1																																																																																																																																				1
ACAGGG/CCCTGT	2																																																																																																																																				2
ACAGTC/ACTGTG	1																																																																																																																																				1
ACATAG/ATGTCT	1																																																																																																																																				1
ACATAT/ATATGT	2																																																																																																																																				2
ACATCT/AGATGT	1																																																																																																																																				1
ACATGC/ATGTGC	1																																																																																																																																				1
ACATGG/ATGTCC	2																																																																																																																																				2
ACATGT/ACATGT	1	1																																																																																																																																			2
ACCACG/CGTGGT	1																																																																																																																																				1
ACCACT/AGTGGT	6													1																																																																																																																							7
ACCAGC/CTGGTG	1	1																																																																																																																																			2
ACCATC/ATGGTG	5																																																																																																																																				5
ACCATG/ATGGTC	1																																																																																																																																				1
ACCCCC/GGGGGT	1																																																																																																																																				1
ACCCTC/AGGGTG	1																																																																																																																																				1
ACCCTG/AGGGTC	1																																																																																																																																				1
ACCGAG/CGGTCT	1																																																																																																																																				1
ACCGCC/CGGTGG	3																																																																																																																																				3
ACCGGG/CCCGGT		1																																																																																																																																			1
ACCGTC/ACGGTG	1																																																																																																																																				1
ACCTAT/AGGTAT	1																																																																																																																																				1
ACCTCC/AGGTGG	1	1																																																																																																																																			2
ACCTCG/AGGTCG	1																																																																																																																																				1
ACCTGC/AGGTGC	1																																																																																																																																				1
ACGACT/AGTCGT	1																																																																																																																																				1
ACGAGC/CGTGCT	1																																																																																																																																				1
ACGAGG/CCTCGT	5																																																																																																																																				5
ACGATC/ATCGTG	2																																																																																																																																				2
ACGATG/ATCGTC	9			1																																																																																																																																	10
ACGCAG/CGTCTG	1																																																																																																																																				1
ACGCGG/CCGCGT	1																																																																																																																																				1
ACGCTC/AGCGTG	1																																																																																																																																				1
ACGCTG/AGCGTC	2																																																																																																																																				2
ACGGAG/CCGTCT	1																																																																																																																																				1
ACGGCC/CCGTGG	3																																																																																																																																				3
ACGTAG/ACGTCT		1																																																																																																																																			1
ACTATC/AGTGAT	2																																																																																																																																				2
ACTATG/AGTCAT	1																																																																																																																																				1
ACTCAG/AGTCTG	1																																																																																																																																				1
ACTCAT/AGTATG	1																																																																																																																																				1
ACTCCC/AGTGGG	1																																																																																																																																				1
ACTCTC/AGAGTG	1																																																																																																																																				1
ACTGAT/AGTATC	1																																																																																																																																				1
ACTGCC/AGTGGC	2	1																																																																																																																																			3
ACTGCG/AGTCGC	2																																																																																																																																				2
ACTGCT/AGCAGT	3																																																																																																																																				3
ACTGGC/AGTGCC	1																																																																																																																																				1
AGAGCC/CTCTGG	4																																																																																																																																				4
AGAGCG/CGCTCT	1																																																																																																																																				1
AGAGCT/AGCTCT	1	1																																																																																																																																			2
AGAGGC/CCTCTG	1	1																																																																																																																																			2
AGAGGG/CCCTCT	5	2																																																																																																																																			7
AGATCG/ATCTCG	2																																																																																																																																				2
AGATGC/ATCTGC	1																																																																																																																																				1
AGCAGG/CCTGCT	3	1																																																																																																																																			4
AGCATC/ATGCTG	3																																																																																																																																				3
AGCCAT/ATGGCT	2																																																																																																																																				2
AGCCCC/CTGGGG	1	1																																																																																																																																			2
AGCCCG/CGGGCT	1																																																																																																																																				1
AGCCGC/CGGCTG	6	1																																																																																																																																			7
AGCCGG/CCGGCT	4																																																																																																																																				4
AGCCTC/AGGCTG	1																																																																																																																																				1
AGCCTG/AGGCTC	4		1																																																																																																																																		5
AGCGAT/ATCGCT	1	1																																																																																																																																			2
AGCGCG/CGCGCT	1																																																																																																																																				1
AGCGGC/CCGCTG	1	2																																																																																																																																			3
AGCGGG/CCCGCT	2																																																																																																																																				2
AGCTCC/AGCTGG	4	1																																																																																																																																			5
AGCTGC/AGCTGC	1																																																																																																																																				1
AGGATC/ATCCTG	1																																																																																																																																				1
AGGATG/ATCCTC	8	3																																																																																																																																			11
AGGCCC/CCTGGG	1																																																																																																																																				1
AGGCGC/CCTGCG	1	1																																																																																																																																			2
AGGCGG/CCGCCT	3																																																																																																																																				3
AGGGAT/ATCCCT		1																																																																																																																																			1
AGGGGG/CCCCCT	2																																																																																																																																				2
ATATCC/ATATGG		1																																																																																																																																			1
ATATCG/ATATCG	1																																																																																																																																				1
ATATGC/ATATGC	1																																																																																																																																				1
ATCCCC/ATGGGG	1																																																																																																																																				1
ATCCCG/ATCGGG	2																																																																																																																																				2
ATCGCC/ATGGCG	2																																																																																																																																				2
ATCGGC/ATGCCG	2																																																																																																																																				2
CCCGCG/CGCGGG	1																																																																																																																																				1
