Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_013145995.1/fasta/hub_GCA_013145995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              78
Total size of examined sequences (bp):           37767028
Total number of identified SSRs:                 3354
Number of SSR containing sequences:              69
Number of sequences containing more than 1 SSR:  65
Number of SSRs present in compound formation:    290


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	197
2	728
3	564
4	374
5	904
6	587

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9	12	12	4	4	3	4	8	3	2	3	1		2	3	1						1		1	1				1		1	1	1					1											1																			1																																																					1	1	83
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						2				1	1				1																																																																																																											6
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	3				1		1	1		2	1																																				1																																																																											12
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	14	11	8	11	5	3	7	8	3	3	1	3	2	1	1	3	1		1		2					1	2	1			1		1							1											1																																																																								96
AC	-	-	-	8	2	2	3		1	1	1		1			1				1																					1																																																																																																			22
AG	-	-	-	29	23	11	9	6	3		3	1	2		3	1	2										1																																																																																																																	94
AT	-	-	-	95	26	11	17	8	5	2	2	1	3																																																																																																																															170
CA	-	-	-	15	6	2	3	1	1				2				1		1																																																																																																																									32
CT	-	-	-	16	5	7	7	4	2	1	2		2	1					1																																																																																																																									48
GA	-	-	-	27	15	4	6			1	1										1	1																																																																																																																						56
GC	-	-	-	3	1																																																																																																																																							4
GT	-	-	-	8	4	5	4	1		1					1																					1																																																																																																								25
TA	-	-	-	107	31	19	12	8	2	4	1	1		1																																																																																																																														186
TC	-	-	-	26	14	7	6	4	2	1	3	1	1	1	2			1		1						1																																																																																																																		71
TG	-	-	-	4	3	2	1	3					2				1					1		1			1						1																																																																																																											20
AAC	-	-	1	1	1	1																																																																																																																																						4
AAG	-	-	17	6	3	5									1	1						1																																																																																																																						34
AAT	-	-	18	7	3	3				2		1																1																																																																																																																35
ACA	-	-	5																																																																																																																																									5
ACC	-	-	2	2																																																																																																																																								4
ACG	-	-	1																																																																																																																																									1
ACT	-	-	5	2																																																																																																																																								7
AGA	-	-	4	5					1		1						1																																																																																																																											12
AGC	-	-	1	2	1																																																																																																																																							4
AGG	-	-	3																																																																																																																																									3
AGT	-	-		1	2		1		1																																																																																																																																			5
ATA	-	-	11	10		1						1							1					2																																																																																																																				26
ATC	-	-	2	1			1																																																																																																																																					4
ATG	-	-	3	2	1																																																																																																																																							6
ATT	-	-	12	5	2	1	1			1							1				1																																																																																																																							24
CAA	-	-	4	6			2																																																																																																																																					12
CAC	-	-	2		2																																																																																																																																							4
CAG	-	-	4		3		2						1																																																																																																																															10
CAT	-	-	4	1		2																							1																																																																																																															8
CCA	-	-	5		1																																																																																																																																							6
CCG	-	-	3																																																																																																																																									3
CCT	-	-	1	1																																																																																																																																								2
CGA	-	-	3																																																																																																																																									3
CGC	-	-	1																																																																																																																																									1
CGG	-	-	1	1																																																																																																																																								2
CGT	-	-	1																																																																																																																																									1
CTA	-	-	3		1									1																																																																																																																														5
CTC	-	-	6	1		1																																																																																																																																						8
CTG	-	-	5	4		1						1																																																																																																																																11
CTT	-	-	14	2	1	1				2	1																																																																																																																																	21
GAA	-	-	7	8	2		1	2	1	2									1																																																																																																																									24
GAC	-	-	2		1																																																																																																																																							3
GAG	-	-	2	3	3				1																																																																																																																																			9
GAT	-	-	7			1																																																																																																																																						8
GCA	-	-	3	1	1	1																																																																																																																																						6
GCC	-	-	6	1																																																																																																																																								7
GCG	-	-	4		1																																																																																																																																							5
GCT	-	-	4	3	1																																																																																																																																							8
GGA	-	-	5	1		2		1	1	1																																																																																																																																		11
GGC	-	-	7	4																																																																																																																																								11
GGT	-	-	4	1																																																																																																																																								5
GTA	-	-	2	2										1																																																																																																																														5
GTC	-	-	2	1																																																																																																																																								3
GTG	-	-	3			1		1	1																																																																																																																																			6
GTT	-	-	4	2	2		1	1																																																																																																																																				10
TAA	-	-	11	3		2						1																																																																																																																																17
TAC	-	-	3			1			1																																																																																																																																			5
TAG	-	-	1	2		1	2			1																																																																																																																																		7
TAT	-	-	10	5	2	1	1																																																																																																																																					19
TCA	-	-	5	1	1	1	1	1																																																																																																																																				10
TCC	-	-	3	1	1	1																																																																																																																																						6
TCG	-	-		1																																																																																																																																								1
TCT	-	-	6	2	2	1	2		1						1																																																																																																																													15
TGA	-	-	5	1	1	1																																																																																																																																						8
TGC	-	-	6	3	2			1																																																																																																																																				12
TGG	-	-	3	1			1																																																																																																																																					5
TGT	-	-	6		1	2	1	1																																																																																																																																				11
TTA	-	-	17	5	4	3																1																																																																																																																						30
TTC	-	-	11	3	2	1				1	1	1																																																																																																																																20
TTG	-	-	3	1	1	1																																																																																																																																						6
AAAG	-	18	8	4	1	3																																																																																																																																						34
AAAT	-	15	2	2																																																																																																																																								19
AAGA	-	3	2	1																																																																																																																																								6
AAGG	-	1																																																																																																																																										1
AATA	-	3																																																																																																																																										3
AATC	-	2	1		1																																																																																																																																							4
AATT	-	5	2	1																																																																																																																																								8
ACAT	-	1		1	1		1																																																																																																																																					4
ACTA	-	1																																																																																																																																										1
ACTC	-		1																																																																																																																																									1
AGAA	-	7			1																																																																																																																																							8
AGAT	-	1																																																																																																																																										1
AGCA	-	1																																																																																																																																										1
AGCT	-	1																																																																																																																																										1
AGGG	-	1																																																																																																																																										1
AGTC	-	1																																																																																																																																										1
AGTG	-	1																																																																																																																																										1
ATAA	-	12																																																																																																																																										12
ATAC	-	6																																																																																																																																										6
ATAG	-	2	1	1																																																																																																																																								4
ATCA	-	2	2																																																																																																																																									4
ATCC	-	1																																																																																																																																										1
ATCT	-	1																																																																																																																																										1
ATGA	-	1																																																																																																																																										1
ATGG	-	1																																																																																																																																										1
ATGT	-	3	1																																																																																																																																									4
ATTA	-	1																																																																																																																																										1
ATTC	-	1				1																																																																																																																																						2
ATTT	-	7	2	1																																																																																																																																								10
CAAA	-	1																																																																																																																																										1
CACT	-	1																																																																																																																																										1
CAGT	-	1																																																																																																																																										1
CATA	-	3			1																																																																																																																																							4
CATC	-	1																																																																																																																																										1
CCCT	-	1																																																																																																																																										1
CCTA	-	1																																																																																																																																										1
CGCT	-	1																																																																																																																																										1
CTAT	-			1																																																																																																																																								1
CTCA	-	2																																																																																																																																										2
CTGG	-	1																																																																																																																																										1
CTTC	-	1																																																																																																																																										1
CTTT	-	6	6	3																																																																																																																																								15
GAAA	-	4	2			1	1																																																																																																																																					8
GAAG	-	1																																																																																																																																										1
GAAT	-		1																																																																																																																																									1
GACA	-	1																																																																																																																																										1
GACG	-		1																																																																																																																																									1
GAGG	-	1																																																																																																																																										1
GAGT	-	2																																																																																																																																										2
GATA	-	2																																																																																																																																										2
GATG	-	1																																																																																																																																										1
GCCA	-	1																																																																																																																																										1
GCTT	-	1																																																																																																																																										1
GGCA	-	1																																																																																																																																										1
GGTA	-				1																																																																																																																																							1
GTAG	-	1	1																																																																																																																																									2
GTAT	-	5																																																																																																																																										5
GTCA	-	1																																																																																																																																										1
GTGA	-	3																																																																																																																																										3
GTTA	-				1																																																																																																																																							1
TAAA	-	10																																																																																																																																										10
TAAC	-	1																																																																																																																																										1
TAAT	-	4	1																																																																																																																																									5
TACA	-	6	3	1		1																																																																																																																																						11
TACC	-	1																																																																																																																																										1
TACT	-	1																																																																																																																																										1
TAGA	-	2																																																																																																																																										2
TAGG	-	1																																																																																																																																										1
TATC	-					1																																																																																																																																						1
TATG	-	2	1		1	1																																																																																																																																						5
TATT	-	5	1	1																																																																																																																																								7
TCAA	-	1	1																																																																																																																																									2
TCAC	-	1																																																																																																																																										1
TCAT	-	2		1																																																																																																																																								3
TCCA	-	2																																																																																																																																										2
TCCT	-			1																																																																																																																																								1
TCGG	-	1																																																																																																																																										1
TCTA	-		1																																																																																																																																									1
TCTG	-		1	1																																																																																																																																								2
TCTT	-	6			2		1																																																																																																																																					9
TGAA	-	2																																																																																																																																										2
TGAT	-	4																																																																																																																																										4
TGCA	-	1																																																																																																																																										1
TGTA	-	7	4	2																																																																																																																																								13
TTAA	-	1																																																																																																																																										1
TTAT	-	9	1	1																																																																																																																																								11
TTCA	-	2																																																																																																																																										2
TTCC	-	1																																																																																																																																										1
TTCT	-	5	1	1																																																																																																																																								7
TTGA	-	7	1	2																																																																																																																																								10
TTGG	-	1																																																																																																																																										1
TTTA	-	17	4		1		1																																																																																																																																					23
TTTC	-	13	6	3																																																																																																																																								22
TTTG	-	2																																																																																																																																										2
AAAAC	2	1																																																																																																																																										3
AAAAG	47	15	5	2	1			1																																																																																																																																				71
AAAAT	32	9	2																																																																																																																																									43
AAACA	1																																																																																																																																											1
AAACG		1																																																																																																																																										1
AAAGA	18	6																																																																																																																																										24
AAAGG	4																																																																																																																																											4
AAAGT	1																																																																																																																																											1
AAATA	9	4																																																																																																																																										13
AAATC	1		2																																																																																																																																									3
AAATG	1																																																																																																																																											1
AAATT	11	1																																																																																																																																										12
AACAA	1																																																																																																																																											1
AACAC	2																																																																																																																																											2
AACCC	1																																																																																																																																											1
AACTA	2																																																																																																																																											2
AAGAA	11	4																																																																																																																																										15
AAGAC	1																																																																																																																																											1
AAGAG	1																																																																																																																																											1
AAGGA	3																																																																																																																																											3
AAGGG	1																																																																																																																																											1
AAGTC	1																																																																																																																																											1
AAGTG	1																																																																																																																																											1
AATAA	12	1																																																																																																																																										13
AATAC	1																																																																																																																																											1
AATAT	5																																																																																																																																											5
AATCA	1																																																																																																																																											1
AATCC	1																																																																																																																																											1
AATGA	2																																																																																																																																											2
AATTA	2																																																																																																																																											2
AATTC	2																																																																																																																																											2
AATTG	1																																																																																																																																											1
AATTT	2																																																																																																																																											2
ACAAA	1																																																																																																																																											1
ACAAC	2																																																																																																																																											2
ACACC	1																																																																																																																																											1
ACAGC	1																																																																																																																																											1
ACAGG	1																																																																																																																																											1
ACAGT	1																																																																																																																																											1
ACATG	1																																																																																																																																											1
ACCAG	1																																																																																																																																											1
ACCCA	1																																																																																																																																											1
ACCCC	1																																																																																																																																											1
ACCGT	1																																																																																																																																											1
ACCTG	1																																																																																																																																											1
ACGCA	1																																																																																																																																											1
ACTAG	2																																																																																																																																											2
ACTAT	1																																																																																																																																											1
ACTGG		1																																																																																																																																										1
ACTGT	1																																																																																																																																											1
ACTTG	1																																																																																																																																											1
AGAAA	10	2																																																																																																																																										12
AGAAG	3	1																																																																																																																																										4
AGACA	2																																																																																																																																											2
AGAGA	1																																																																																																																																											1
AGAGC	1																																																																																																																																											1
AGAGG	1																																																																																																																																											1
AGATC		1																																																																																																																																										1
AGATG	1	1																																																																																																																																										2
AGCAA		1																																																																																																																																										1
AGCCA	1																																																																																																																																											1
AGCTG	1																																																																																																																																											1
AGGAA	2																																																																																																																																											2
AGGAT	1																																																																																																																																											1
AGGCG	1																																																																																																																																											1
AGGGA	3																																																																																																																																											3
AGGGG	1																																																																																																																																											1
AGGTG	1																																																																																																																																											1
AGTAC	3																																																																																																																																											3
AGTCA	1																																																																																																																																											1
ATAAA	21	1	1																																																																																																																																									23
ATAAT	2																																																																																																																																											2
ATACC	2																																																																																																																																											2
ATATA	7																																																																																																																																											7
ATATC	1																																																																																																																																											1
ATATG	1																																																																																																																																											1
ATATT	4																																																																																																																																											4
ATCAT	1																																																																																																																																											1
ATCCC	1	1																																																																																																																																										2
ATCCT	1																																																																																																																																											1
ATCTA	1																																																																																																																																											1
ATCTC	1																																																																																																																																											1
ATGAT	2																																																																																																																																											2
ATGCA	2	1																																																																																																																																										3
ATGGG	1																																																																																																																																											1
ATGTA	1																																																																																																																																											1
ATGTC	1																																																																																																																																											1
ATTAA	9																																																																																																																																											9
ATTAT	2																																																																																																																																											2
ATTCA	1																																																																																																																																											1
ATTTA	3																																																																																																																																											3
ATTTC	1																																																																																																																																											1
ATTTG	1																																																																																																																																											1
ATTTT	12	2		1																																																																																																																																								15
CAAAA	1																																																																																																																																											1
CAAAG	2																																																																																																																																											2
CAAAT	2																																																																																																																																											2
CAACA	1																																																																																																																																											1
CAAGA		1																																																																																																																																										1
CAAGT	1																																																																																																																																											1
CAATA	1																																																																																																																																											1
CAATG	1																																																																																																																																											1
CACAT	1																																																																																																																																											1
CACCC	1																																																																																																																																											1
CAGCC	1																																																																																																																																											1
CAGGA	1																																																																																																																																											1
CATAC	2																																																																																																																																											2
CATAG	1																																																																																																																																											1
CATCT	1																																																																																																																																											1
CATGT	1																																																																																																																																											1
CATTC	1																																																																																																																																											1
CATTT	3																																																																																																																																											3
CCAAA	1																																																																																																																																											1
CCAAC	2																																																																																																																																											2
CCACA	1																																																																																																																																											1
CCACC	1																																																																																																																																											1
CCACG	1																																																																																																																																											1
CCATA	1																																																																																																																																											1
CCATT		1																																																																																																																																										1
CCCAA	1																																																																																																																																											1
CCCAT	1																																																																																																																																											1
CCCCT	1																																																																																																																																											1
CCCGA	1																																																																																																																																											1
CCCTC	1																																																																																																																																											1
CCCTT	1																																																																																																																																											1
CCGGT	1																																																																																																																																											1
CCGTG	1																																																																																																																																											1
CCTAT	1																																																																																																																																											1
CCTCC		1																																																																																																																																										1
CCTCT	1																																																																																																																																											1
CCTTC	1																																																																																																																																											1
CCTTT	1																																																																																																																																											1
CGAAC	1																																																																																																																																											1
CGACA	1																																																																																																																																											1
CGTCT	1	1																																																																																																																																										2
CGTGT			1																																																																																																																																									1
CGTTC	1																																																																																																																																											1
CTAAA	1																																																																																																																																											1
CTACA		1																																																																																																																																										1
CTAGA	1																																																																																																																																											1
CTAGT		1																																																																																																																																										1
CTATC	1																																																																																																																																											1
CTATT	1																																																																																																																																											1
CTCAA	1																																																																																																																																											1
CTCAG	1																																																																																																																																											1
CTCAT	3																																																																																																																																											3
CTCCA	1																																																																																																																																											1
CTCCG	1																																																																																																																																											1
CTCTC			1																																																																																																																																									1
CTCTT	1																																																																																																																																											1
CTGAA	1																																																																																																																																											1
CTGAT		1																																																																																																																																										1
CTGCC	1																																																																																																																																											1
CTGTC	1																																																																																																																																											1
CTTCC	1																																																																																																																																											1
CTTCT	3																																																																																																																																											3
CTTTC	1																																																																																																																																											1
CTTTT	11	7	1																																																																																																																																									19
GAAAA	13	4		1																																																																																																																																								18
GAAAG	3																																																																																																																																											3
GAAAT	1																																																																																																																																											1
GAAGA	1																																																																																																																																											1
GAAGG	1																																																																																																																																											1
GAATG	1																																																																																																																																											1
GAATT	1																																																																																																																																											1
GACAA	1																																																																																																																																											1
GACTA	1																																																																																																																																											1
GAGAA	1																																																																																																																																											1
GAGAC	1																																																																																																																																											1
GAGAG	1																																																																																																																																											1
GAGAT	1	1	1																																																																																																																																									3
GAGGA	1																																																																																																																																											1
GAGGC	1																																																																																																																																											1
GAGGG	2																																																																																																																																											2
GATAA	1																																																																																																																																											1
GATGA	1																																																																																																																																											1
GATGG	1																																																																																																																																											1
GATGT	1																																																																																																																																											1
GATTG	3																																																																																																																																											3
GCAAA	1																																																																																																																																											1
GCAAC	1																																																																																																																																											1
GCATC	1																																																																																																																																											1
GCTCA	1																																																																																																																																											1
GCTGA	1																																																																																																																																											1
GGAAA	2																																																																																																																																											2
GGAAG		1																																																																																																																																										1
GGAGA	2																																																																																																																																											2
GGATA	1																																																																																																																																											1
GGATT	1																																																																																																																																											1
GGCTC	1																																																																																																																																											1
GGCTG	1																																																																																																																																											1
GGGAA	1																																																																																																																																											1
GGGAC	1		1																																																																																																																																									2
GGGAG	1																																																																																																																																											1
GGGAT	1																																																																																																																																											1
GGGGA	1																																																																																																																																											1
GGTAA	1																																																																																																																																											1
GGTAG		1																																																																																																																																										1
GGTCT		1																																																																																																																																										1
GGTGT	1																																																																																																																																											1
GGTTA		1																																																																																																																																										1
GGTTC	2																																																																																																																																											2
GGTTG	1																																																																																																																																											1
GGTTT	1																																																																																																																																											1
GTACA	1																																																																																																																																											1
GTATG	1																																																																																																																																											1
GTATT	1																																																																																																																																											1
GTCGA		1																																																																																																																																										1
GTGTA	1																																																																																																																																											1
GTTAG	1																																																																																																																																											1
GTTGA	1																																																																																																																																											1
GTTGG	2																																																																																																																																											2
GTTTT	2																																																																																																																																											2
TAAAA	14	2	1																																																																																																																																									17
TAAAT	3																																																																																																																																											3
TAACA	1																																																																																																																																											1
TAACC	1																																																																																																																																											1
TAATA	2																																																																																																																																											2
TAATG		1																																																																																																																																										1
TAATT	5																																																																																																																																											5
TACAG	1																																																																																																																																											1
TACCA	1																																																																																																																																											1
TACCC	1																																																																																																																																											1
TACCG		1																																																																																																																																										1
TACGG	2																																																																																																																																											2
TACTG	1																																																																																																																																											1
TAGAT	1																																																																																																																																											1
TAGCT	1																																																																																																																																											1
TAGGT	2																																																																																																																																											2
TAGTA	1																																																																																																																																											1
TAGTT	1																																																																																																																																											1
TATAA	3																																																																																																																																											3
TATAT	1																																																																																																																																											1
TATCA	2																																																																																																																																											2
TATCG	1																																																																																																																																											1
TATGT	1																																																																																																																																											1
TATTA	4																																																																																																																																											4
TATTT	10		1	1				1																																																																																																																																				13
TCAAA	1																																																																																																																																											1
TCACA	1																																																																																																																																											1
TCATC	1	1																																																																																																																																										2
TCATT		1	1																																																																																																																																									2
TCCAA	1																																																																																																																																											1
TCCCC	1																																																																																																																																											1
TCCTA	1																																																																																																																																											1
TCCTC	1																																																																																																																																											1
TCGCC		1																																																																																																																																										1
TCTAC	1																																																																																																																																											1
TCTAT	1	1																																																																																																																																										2
TCTCT	2		1																																																																																																																																									3
TCTTA	1																																																																																																																																											1
TCTTC	2																																																																																																																																											2
TCTTT	14	1																																																																																																																																										15
TGAAA	1																																																																																																																																											1
TGACA		1																																																																																																																																										1
TGAGC	1																																																																																																																																											1
TGATA	1																																																																																																																																											1
TGATG	1																																																																																																																																											1
TGCAT	1																																																																																																																																											1
TGCTA	1																																																																																																																																											1
TGGGT	1																																																																																																																																											1
TGTAC	2																																																																																																																																											2
TGTCT	1																																																																																																																																											1
TGTTG	1																																																																																																																																											1
TGTTT	2	1																																																																																																																																										3
TTAAA	5																																																																																																																																											5
TTAAT	14																																																																																																																																											14
TTACT	1																																																																																																																																											1
TTATA	2																																																																																																																																											2
TTATT	11	1																																																																																																																																										12
TTCAC	1																																																																																																																																											1
TTCAT	2																																																																																																																																											2
TTCCC	1																																																																																																																																											1
TTCCT	2																																																																																																																																											2
TTCTC	1																																																																																																																																											1
TTCTT	13	2																																																																																																																																										15
TTGAA		1																																																																																																																																										1
TTGCA		1																																																																																																																																										1
TTGGT	2																																																																																																																																											2
TTGTA	1																																																																																																																																											1
TTTAA	10		1																																																																																																																																									11
TTTAG	1																																																																																																																																											1
TTTAT	20	2																																																																																																																																										22
TTTCC	5																																																																																																																																											5
TTTCG	1																																																																																																																																											1
TTTCT	19	3	1	1	1																																																																																																																																							25
TTTGA	2																																																																																																																																											2
TTTGG	1																																																																																																																																											1
TTTGT	1																																																																																																																																											1
TTTTA	23	3	3	1																																																																																																																																								30
TTTTC	41	12	6	2																																																																																																																																								61
TTTTG	4	1																																																																																																																																										5
AAAAAG	15	4	1	1																																																																																																																																								21
AAAAAT	17	4																																																																																																																																										21
AAAACA	2	1																																																																																																																																										3
AAAAGA	7	2																																																																																																																																										9
AAAAGC		1																																																																																																																																										1
AAAAGG		1																																																																																																																																										1
AAAATA	10	2																																																																																																																																										12
AAAATT	1																																																																																																																																											1
AAACAG		1																																																																																																																																										1
AAACCA	1																																																																																																																																											1
AAACCC	1																																																																																																																																											1
AAAGAA	9	1																																																																																																																																										10
AAAGAG	1	1																																																																																																																																										2
AAAGCA	1																																																																																																																																											1
AAAGGA	1																																																																																																																																											1
AAAGGG		1																																																																																																																																										1
AAAGTG	1																																																																																																																																											1
AAATAA	6																																																																																																																																											6
AAATAT			1																																																																																																																																									1
AAATGA	1																																																																																																																																											1
AACACA	1																																																																																																																																											1
AACAGG	1																																																																																																																																											1
AACCAC	2																																																																																																																																											2
AACCCC	1																																																																																																																																											1
AACCTG	1																																																																																																																																											1
AACGGA	1																																																																																																																																											1
AAGAAA	2																																																																																																																																											2
AAGAAC	1																																																																																																																																											1
AAGAGG		1																																																																																																																																										1
AAGATA	1																																																																																																																																											1
AAGCCG		1																																																																																																																																										1
AATAAA	3		1																																																																																																																																									4
AATCTA	1																																																																																																																																											1
AATGAA	1																																																																																																																																											1
AATGTA		1																																																																																																																																										1
AATTAA	2																																																																																																																																											2
AATTTA	1																																																																																																																																											1
AATTTT	1																																																																																																																																											1
ACAATT	1																																																																																																																																											1
ACAGCA	1																																																																																																																																											1
ACCACT	1																																																																																																																																											1
ACCGCC	1																																																																																																																																											1
ACGACC	1																																																																																																																																											1
ACGATG	1																																																																																																																																											1
ACGTCA	1																																																																																																																																											1
ACTTGG	1																																																																																																																																											1
ACTTTG	1																																																																																																																																											1
AGAAAA	3	2																																																																																																																																										5
AGAAAG	1																																																																																																																																											1
AGAACA	1																																																																																																																																											1
AGACAA	1																																																																																																																																											1
AGACAC	1																																																																																																																																											1
AGAGAA	1																																																																																																																																											1
AGAGCC	1																																																																																																																																											1
AGAGGC		1																																																																																																																																										1
AGAGGG	1																																																																																																																																											1
AGCCCC	1																																																																																																																																											1
AGCGGG	1																																																																																																																																											1
AGCTCT	1																																																																																																																																											1
AGCTGC	1																																																																																																																																											1
AGGACA	1																																																																																																																																											1
AGGAGC	1																																																																																																																																											1
AGGCGA	1																																																																																																																																											1
AGGGCA	1																																																																																																																																											1
AGGGTC	1																																																																																																																																											1
AGGTGG		1																																																																																																																																										1
AGTAGC	1																																																																																																																																											1
AGTATG	1																																																																																																																																											1
AGTCCA	1																																																																																																																																											1
AGTGAG	1																																																																																																																																											1
AGTTTC	1																																																																																																																																											1
ATAAAA	2	1																																																																																																																																										3
ATAAAG	1																																																																																																																																											1
ATAAAT	1																																																																																																																																											1
ATAACT	1																																																																																																																																											1
ATAATC	2																																																																																																																																											2
ATAATT	3																																																																																																																																											3
ATATTA	1																																																																																																																																											1
ATCAAA		1																																																																																																																																										1
ATCCAT		1																																																																																																																																										1
ATCCCA	1	1																																																																																																																																										2
ATCCCC	1																																																																																																																																											1
ATCCTC	1																																																																																																																																											1
ATCGAT	1																																																																																																																																											1
ATCGCC	1																																																																																																																																											1
ATCTAC	1																																																																																																																																											1
ATGAAC	1																																																																																																																																											1
ATGACC	1																																																																																																																																											1
ATGACG	1																																																																																																																																											1
ATGCCA	2																																																																																																																																											2
ATGGTA	1																																																																																																																																											1
ATGTAC	1	1																																																																																																																																										2
ATGTCT	1																																																																																																																																											1
ATTAAT	4																																																																																																																																											4
ATTATA	3																																																																																																																																											3
ATTCAC	1																																																																																																																																											1
ATTCTC	1																																																																																																																																											1
ATTTAA	1	1																																																																																																																																										2
ATTTTC	1																																																																																																																																											1
ATTTTT	2																																																																																																																																											2
CAAAAG	1																																																																																																																																											1
CAACAG	1			1																																																																																																																																								2
CAAGAA	1																																																																																																																																											1
CACCAA	1																																																																																																																																											1
CACGGC	1																																																																																																																																											1
CACTAC	1																																																																																																																																											1
CACTGC	1																																																																																																																																											1
CAGAAG	1																																																																																																																																											1
CAGGAA	1																																																																																																																																											1
CAGGCC	1																																																																																																																																											1
CAGTCA	1																																																																																																																																											1
CAGTGG		1																																																																																																																																										1
CATAGC	1																																																																																																																																											1
CATCCT		1																																																																																																																																										1
CATGTG	1																																																																																																																																											1
CATTTC	1	1																																																																																																																																										2
CATTTT	1																																																																																																																																											1
CCAAAC	1																																																																																																																																											1
CCAAGA	1																																																																																																																																											1
CCACTT	1																																																																																																																																											1
CCAGCT	1																																																																																																																																											1
CCATGT	1																																																																																																																																											1
CCCACT	1																																																																																																																																											1
CCCCAC	1																																																																																																																																											1
CCCCCT	1																																																																																																																																											1
CCCTCT		1																																																																																																																																										1
CCGAAC	1																																																																																																																																											1
CCGATG	1																																																																																																																																											1
CCGCCA	1																																																																																																																																											1
CCGCCT	1																																																																																																																																											1
CCGCGC	1																																																																																																																																											1
CCGTGG	1																																																																																																																																											1
CCTCAC	1																																																																																																																																											1
CCTCTC		1																																																																																																																																										1
CCTCTG	1																																																																																																																																											1
CCTGCA	1																																																																																																																																											1
CCTTGC	1																																																																																																																																											1
CCTTTC	1																																																																																																																																											1
CGAAGC	1																																																																																																																																											1
CGACTC	1																																																																																																																																											1
CGATAG		1																																																																																																																																										1
CGATCC	1																																																																																																																																											1
CGCAGC		1																																																																																																																																										1
CGCTCA	1																																																																																																																																											1
CGGAGC	1																																																																																																																																											1
CGTCCG	1																																																																																																																																											1
CGTCCT	1																																																																																																																																											1
CGTCTC	1																																																																																																																																											1
CGTGAT	1																																																																																																																																											1
CTATGA	1																																																																																																																																											1
CTATTA	1																																																																																																																																											1
CTATTT	1																																																																																																																																											1
CTCAGA	1																																																																																																																																											1
CTCATC	1																																																																																																																																											1
CTCCCG	1																																																																																																																																											1
CTCGTC	1																																																																																																																																											1
CTCTCC	1																																																																																																																																											1
CTGAGC	1																																																																																																																																											1
CTGATA	1																																																																																																																																											1
CTGATG	1																																																																																																																																											1
CTGGAG	1																																																																																																																																											1
CTGGCT	1																																																																																																																																											1
CTTCGT	1																																																																																																																																											1
CTTCTA	1																																																																																																																																											1
CTTCTC	1																																																																																																																																											1
CTTGTT	1																																																																																																																																											1
CTTTCT	1																																																																																																																																											1
CTTTTA	1																																																																																																																																											1
CTTTTC	1																																																																																																																																											1
CTTTTT	4	4																																																																																																																																										8
GAAAAA	4																																																																																																																																											4
GAAAAG	1																																																																																																																																											1
GAAGAC	1																																																																																																																																											1
GAAGAG	3	1																																																																																																																																										4
GAATGG	1																																																																																																																																											1
GAATTA	1																																																																																																																																											1
GACAAC	1																																																																																																																																											1
GACAAG		1																																																																																																																																										1
GACAGC	1																																																																																																																																											1
GACATG	1																																																																																																																																											1
GACGAA	1																																																																																																																																											1
GACGAG	2																																																																																																																																											2
GACGCA	1																																																																																																																																											1
GACTGC	1																																																																																																																																											1
GAGAAA	1																																																																																																																																											1
GAGCAG	1																																																																																																																																											1
GAGCCA	2																																																																																																																																											2
GAGCCC	1																																																																																																																																											1
GAGCCT	1																																																																																																																																											1
GAGCGC	1																																																																																																																																											1
GAGGAA	2																																																																																																																																											2
GAGGAT	3																																																																																																																																											3
GAGGCG	1																																																																																																																																											1
GAGGGA	1																																																																																																																																											1
GAGGTC	1																																																																																																																																											1
GAGGTG	1																																																																																																																																											1
GATAGG	1																																																																																																																																											1
GATCCC	1																																																																																																																																											1
GATGAG	1			1																																																																																																																																								2
GATGGT	1																																																																																																																																											1
GATGTT	1																																																																																																																																											1
GATTGT	1																																																																																																																																											1
GCAAAA		1																																																																																																																																										1
GCAACC	1																																																																																																																																											1
GCAGCC	1																																																																																																																																											1
GCATCA	1																																																																																																																																											1
GCCACC	1																																																																																																																																											1
GCCACG	1																																																																																																																																											1
GCCATT	1																																																																																																																																											1
GCCGAT	1																																																																																																																																											1
GCCGCT		1																																																																																																																																										1
GCCGGC	1																																																																																																																																											1
GCCTGA	1																																																																																																																																											1
GCGATG	1																																																																																																																																											1
GCGATT	1																																																																																																																																											1
GCGCAG		1																																																																																																																																										1
GCGCCT	1																																																																																																																																											1
GCGGCA		1																																																																																																																																										1
GCTAGA		1																																																																																																																																										1
GCTCCT		1																																																																																																																																										1
GCTCTC	1																																																																																																																																											1
GCTGAC	1																																																																																																																																											1
GCTGCG	1																																																																																																																																											1
GCTTCC	1																																																																																																																																											1
GCTTTT	1																																																																																																																																											1
GGAAAA	1																																																																																																																																											1
GGAAGA	1																																																																																																																																											1
GGAGAA	1																																																																																																																																											1
GGAGCC	2																																																																																																																																											2
GGAGGG	1																																																																																																																																											1
GGAGTT	1																																																																																																																																											1
GGATTG	1																																																																																																																																											1
GGCGGT	1																																																																																																																																											1
GGCTGC	3																																																																																																																																											3
GGCTGG		1																																																																																																																																										1
GGGACC		1																																																																																																																																										1
GGGAGA	1																																																																																																																																											1
GGGTTG	1																																																																																																																																											1
GGTGTG		1																																																																																																																																										1
GGTTAT	1																																																																																																																																											1
GGTTTG	1																																																																																																																																											1
GTAGCA	1																																																																																																																																											1
GTAGTC	1																																																																																																																																											1
GTAGTG		1																																																																																																																																										1
GTATAG	1																																																																																																																																											1
GTCACC	1																																																																																																																																											1
GTCATC				1																																																																																																																																								1
GTGCTC	1																																																																																																																																											1
GTGGCA	1																																																																																																																																											1
GTGGTT	2																																																																																																																																											2
GTGTAT	1																																																																																																																																											1
GTGTGC	1																																																																																																																																											1
GTGTTG	1																																																																																																																																											1
GTTCCT	1																																																																																																																																											1
GTTCTT	1																																																																																																																																											1
GTTGAA	1																																																																																																																																											1
GTTGCA	1																																																																																																																																											1
GTTGGC			1																																																																																																																																									1
GTTGGG	1																																																																																																																																											1
TAAAAA	2	1																																																																																																																																										3
TAAAAT	1																																																																																																																																											1
TAATTA	1																																																																																																																																											1
TAGAAA	1																																																																																																																																											1
TAGTAA	1																																																																																																																																											1
TAGTGG	1																																																																																																																																											1
TATAAT	1																																																																																																																																											1
TATATG	1																																																																																																																																											1
TATGCA	1																																																																																																																																											1
TATTAA	2																																																																																																																																											2
TATTTT	3	1																																																																																																																																										4
TCACGA	1																																																																																																																																											1
TCAGCC	1																																																																																																																																											1
TCAGGA	1																																																																																																																																											1
TCATCG	4																																																																																																																																											4
TCATTC	1																																																																																																																																											1
TCATTT	1																																																																																																																																											1
TCCAAT	1																																																																																																																																											1
TCCAGC	2																																																																																																																																											2
TCCCTC	1																																																																																																																																											1
TCCCTG	2																																																																																																																																											2
TCCTCA	2																																																																																																																																											2
TCCTCT	1																																																																																																																																											1
TCCTGC	1																																																																																																																																											1
TCGCAG	1																																																																																																																																											1
TCGCTA	1																																																																																																																																											1
TCGTCA	1																																																																																																																																											1
TCGTCC	1																																																																																																																																											1
TCTACG	1																																																																																																																																											1
TCTACT		1																																																																																																																																										1
TCTCGC	1																																																																																																																																											1
TCTGCT	1																																																																																																																																											1
TCTTCA		2																																																																																																																																										2
TCTTCC	1																																																																																																																																											1
TCTTCG	1																																																																																																																																											1
TCTTGT		1																																																																																																																																										1
TCTTTC								1																																																																																																																																				1
TCTTTT	3			1																																																																																																																																								4
TGAAGA	1																																																																																																																																											1
TGAATG	1																																																																																																																																											1
TGACAT	1																																																																																																																																											1
TGACGA	2																																																																																																																																											2
TGACGC	1																																																																																																																																											1
TGAGGA	1																																																																																																																																											1
TGATGC	1																																																																																																																																											1
TGATGT	2																																																																																																																																											2
TGATTA	1																																																																																																																																											1
TGCAGA	1																																																																																																																																											1
TGCTGG	2																																																																																																																																											2
TGCTGT	1	1																																																																																																																																										2
TGGGGT	1																																																																																																																																											1
TGGGTT	1																																																																																																																																											1
TGGTAG	2																																																																																																																																											2
TGGTGA	2																																																																																																																																											2
TGTAGT	1																																																																																																																																											1
TGTATA	1																																																																																																																																											1
TGTCGT	1																																																																																																																																											1
TGTCTT	1																																																																																																																																											1
TGTGGT	1																																																																																																																																											1
TGTGTA	1																																																																																																																																											1
TGTTGC	1																																																																																																																																											1
TGTTTT	1																																																																																																																																											1
TTAATA	5																																																																																																																																											5
TTAATT	2																																																																																																																																											2
TTACTA	1																																																																																																																																											1
TTATAA		1																																																																																																																																										1
TTATCA	1																																																																																																																																											1
TTATGA	1																																																																																																																																											1
TTATTT	3																																																																																																																																											3
TTCAAC	1																																																																																																																																											1
TTCGGG	1																																																																																																																																											1
TTCTCA	1																																																																																																																																											1
TTCTCT	2																																																																																																																																											2
TTCTTA	1																																																																																																																																											1
TTCTTT	5	3																																																																																																																																										8
TTGAGG	1																																																																																																																																											1
TTGCCA		1																																																																																																																																										1
TTGTAG	1																																																																																																																																											1
TTGTTA	1																																																																																																																																											1
TTTAAT	2																																																																																																																																											2
TTTACC	1																																																																																																																																											1
TTTAGA	1																																																																																																																																											1
TTTATA	1																																																																																																																																											1
TTTATT	8		1																																																																																																																																									9
TTTCAT	1																																																																																																																																											1
TTTCCC	2	1																																																																																																																																										3
TTTCTC	1																																																																																																																																											1
TTTCTT	8																																																																																																																																											8
TTTGGG	1																																																																																																																																											1
TTTGTT	1																																																																																																																																											1
TTTTAA	2																																																																																																																																											2
TTTTAC	1																																																																																																																																											1
TTTTAT	7	1																																																																																																																																										8
TTTTCA	3																																																																																																																																											3
TTTTCC	1																																																																																																																																											1
TTTTCT	7	2	1																																																																																																																																									10
TTTTGG	1																																																																																																																																											1
TTTTTA	12	4				1																																																																																																																																						17
TTTTTC	12	1	1																																																																																																																																									14

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	23	23	20	15	9	6	11	16	6	5	4	4	2	3	4	4	1		1		2	1		1	1	1	2	1	1		2	1	2					1		1									1		1																	1																																																					1	1	179
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	3				1	2	1	1		3	2				1																																1																																																																											18
AC/GT	-	-	-	35	15	11	11	5	2	2	1		5		1	1	2		1	1		1		1			1						1			1					1																																																																																																			99
AG/CT	-	-	-	98	57	29	28	14	7	3	9	2	5	2	5	1	2	1	1	1	1	1				1	1																																																																																																																	269
AT/AT	-	-	-	202	57	30	29	16	7	6	3	2	3	1																																																																																																																														356
CG/CG	-	-	-	3	1																																																																																																																																							4
AAC/GTT	-	-	23	10	5	4	4	2																																																																																																																																				48
AAG/CTT	-	-	59	26	10	8	3	2	3	5	3	1			2	1	1		1			1																																																																																																																						126
AAT/ATT	-	-	79	35	11	11	2			3		3					1		1		1	1		2				1																																																																																																																151
ACC/GGT	-	-	19	4	3	1	1	1	1																																																																																																																																			30
ACG/CGT	-	-	9	2	1																																																																																																																																							12
ACT/AGT	-	-	14	7	3	2	3		2	1				2																																																																																																																														34
AGC/CTG	-	-	23	13	8	2	2	1				1	1																																																																																																																															51
AGG/CCT	-	-	20	7	4	4		1	2	1																																																																																																																																		39
ATC/ATG	-	-	26	6	3	5	2	1																					1																																																																																																															44
CCG/CGG	-	-	22	6	1																																																																																																																																							29
AAAC/GTTT	-	3																																																																																																																																										3
AAAG/CTTT	-	62	25	12	4	4	2																																																																																																																																					109
AAAT/ATTT	-	78	10	5	1		1																																																																																																																																					95
AACC/GGTT	-	1																																																																																																																																										1
AACT/AGTT	-	2			1																																																																																																																																							3
AAGC/CTTG	-	2																																																																																																																																										2
AAGG/CCTT	-	4		1																																																																																																																																								5
AAGT/ACTT	-	1																																																																																																																																										1
AATC/ATTG	-	16	5	2	1																																																																																																																																							24
AATG/ATTC	-	8	1	1		1																																																																																																																																						11
AATT/AATT	-	11	3	1																																																																																																																																								15
ACAG/CTGT	-	1	1	1																																																																																																																																								3
ACAT/ATGT	-	33	9	4	3	2	1																																																																																																																																					52
ACCG/CGGT	-	1																																																																																																																																										1
ACCT/AGGT	-	4	1		1																																																																																																																																							6
ACGG/CCGT	-		1																																																																																																																																									1
ACTC/AGTG	-	10	1																																																																																																																																									11
ACTG/AGTC	-	3																																																																																																																																										3
AGAT/ATCT	-	8	2	2		1																																																																																																																																						13
AGCC/CTGG	-	2																																																																																																																																										2
AGCG/CGCT	-	1																																																																																																																																										1
AGCT/AGCT	-	1																																																																																																																																										1
AGGC/CCTG	-	1																																																																																																																																										1
AGGG/CCCT	-	3																																																																																																																																										3
ATCC/ATGG	-	6																																																																																																																																										6
ATGC/ATGC	-	1																																																																																																																																										1
AAAAC/GTTTT	15	3																																																																																																																																										18
AAAAG/CTTTT	197	56	13	6	2			1																																																																																																																																				275
AAAAT/ATTTT	164	25	8	3				1																																																																																																																																				201
AAACC/GGTTT	5																																																																																																																																											5
AAACG/CGTTT	1	1																																																																																																																																										2
AAACT/AGTTT	5																																																																																																																																											5
AAAGC/CTTTG	3	1																																																																																																																																										4
AAAGG/CCTTT	23																																																																																																																																											23
AAAGT/ACTTT	2																																																																																																																																											2
AAATC/ATTTG	8		2																																																																																																																																									10
AAATG/ATTTC	11	1	1																																																																																																																																									13
AAATT/AATTT	64	1	1																																																																																																																																									66
AACAC/GTGTT	6																																																																																																																																											6
AACAT/ATGTT	2																																																																																																																																											2
AACCC/GGGTT	9																																																																																																																																											9
AACCG/CGGTT	3																																																																																																																																											3
AACCT/AGGTT	4	1																																																																																																																																										5
AACGC/CGTTG	2																																																																																																																																											2
AACGG/CCGTT	1																																																																																																																																											1
AACTC/AGTTG	2																																																																																																																																											2
AACTG/AGTTC	1																																																																																																																																											1
AAGAC/CTTGT	5	1																																																																																																																																										6
AAGAG/CTCTT	16	1	1																																																																																																																																									18
AAGAT/ATCTT	2																																																																																																																																											2
AAGCC/CTTGG	1																																																																																																																																											1
AAGCT/AGCTT	1																																																																																																																																											1
AAGGG/CCCTT	10	1																																																																																																																																										11
AAGGT/ACCTT	1																																																																																																																																											1
AAGTC/ACTTG	4																																																																																																																																											4
AAGTG/ACTTC	2																																																																																																																																											2
AATAC/ATTGT	4																																																																																																																																											4
AATAG/ATTCT	2	1																																																																																																																																										3
AATAT/ATATT	32																																																																																																																																											32
AATCC/ATTGG	6																																																																																																																																											6
AATCT/AGATT	2																																																																																																																																											2
AATGC/ATTGC	4	2																																																																																																																																										6
AATGG/ATTCC	2	1																																																																																																																																										3
AATGT/ACATT	1	1																																																																																																																																										2
AATTC/AATTG	5	1																																																																																																																																										6
ACACC/GGTGT	3																																																																																																																																											3
ACACG/CGTGT	1		1																																																																																																																																									2
ACACT/AGTGT	1	1																																																																																																																																										2
ACAGC/CTGTG	1																																																																																																																																											1
ACAGG/CCTGT	3																																																																																																																																											3
ACAGT/ACTGT	10																																																																																																																																											10
ACATC/ATGTG	4																																																																																																																																											4
ACATG/ATGTC	3	1																																																																																																																																										4
ACCAG/CTGGT	1	1																																																																																																																																										2
ACCAT/ATGGT	7																																																																																																																																											7
ACCCC/GGGGT	3																																																																																																																																											3
ACCCG/CGGGT	1																																																																																																																																											1
ACCCT/AGGGT	1	1																																																																																																																																										2
ACCGG/CCGGT	1																																																																																																																																											1
ACCGT/ACGGT	3	1																																																																																																																																										4
ACCTC/AGGTG	1																																																																																																																																											1
ACCTG/AGGTC	1																																																																																																																																											1
ACGAG/CGTCT	2	1																																																																																																																																										3
ACGAT/ATCGT	1																																																																																																																																											1
ACGCC/CGTGG	1																																																																																																																																											1
ACGGC/CCGTG	1																																																																																																																																											1
ACGGG/CCCGT	1		1																																																																																																																																									2
ACTAG/AGTCT	4	1																																																																																																																																										5
ACTAT/AGTAT	2																																																																																																																																											2
ACTCC/AGTGG	1																																																																																																																																											1
ACTCG/AGTCG		1																																																																																																																																										1
ACTCT/AGAGT	1																																																																																																																																											1
ACTGG/AGTCC		1																																																																																																																																										1
AGAGC/CTCTG	1																																																																																																																																											1
AGAGG/CCTCT	7		1																																																																																																																																									8
AGATC/ATCTG		2																																																																																																																																										2
AGATG/ATCTC	9	3	1																																																																																																																																									13
AGCAT/ATGCT	2																																																																																																																																											2
AGCCC/CTGGG	2																																																																																																																																											2
AGCCG/CGGCT	1																																																																																																																																											1
AGCGG/CCGCT	1																																																																																																																																											1
AGCTC/AGCTG	5																																																																																																																																											5
AGGAT/ATCCT	6																																																																																																																																											6
AGGCG/CCTCG	2	1																																																																																																																																										3
AGGGC/CCCTG	1																																																																																																																																											1
AGGGG/CCCCT	8	1																																																																																																																																										9
ATATC/ATATG	8																																																																																																																																											8
ATCCC/ATGGG	5	1																																																																																																																																										6
ATCGC/ATGCG	1																																																																																																																																											1
AAAAAC/GTTTTT	4	1																																																																																																																																										5
AAAAAG/CTTTTT	79	19	3	2																																																																																																																																								103
AAAAAT/ATTTTT	75	14	2			1																																																																																																																																						92
AAAACC/GGTTTT	2																																																																																																																																											2
AAAAGC/CTTTTG	3	2																																																																																																																																										5
AAAAGG/CCTTTT	5	1																																																																																																																																										6
AAAAGT/ACTTTT	2																																																																																																																																											2
AAAATC/ATTTTG		1																																																																																																																																										1
AAAATG/ATTTTC	9																																																																																																																																											9
AAAATT/AATTTT	11																																																																																																																																											11
AAACAC/GTGTTT	1																																																																																																																																											1
AAACAG/CTGTTT		1																																																																																																																																										1
AAACCC/GGGTTT	5																																																																																																																																											5
AAACGG/CCGTTT	1																																																																																																																																											1
AAACTG/AGTTTC	1																																																																																																																																											1
AAAGAC/CTTTGT	2																																																																																																																																											2
AAAGAG/CTCTTT	8	1						1																																																																																																																																				10
AAAGAT/ATCTTT	2																																																																																																																																											2
AAAGGG/CCCTTT	3	2																																																																																																																																										5
AAAGGT/ACCTTT	1																																																																																																																																											1
AAAGTC/ACTTTG	1																																																																																																																																											1
AAAGTG/ACTTTC	1																																																																																																																																											1
AAATAG/ATTTCT	2																																																																																																																																											2
AAATAT/ATATTT	2		1																																																																																																																																									3
AAATCT/AGATTT	2																																																																																																																																											2
AAATGG/ATTTCC	1	1																																																																																																																																										2
AAATGT/ACATTT		1																																																																																																																																										1
AAATTT/AAATTT	2	1																																																																																																																																										3
AACAAG/CTTGTT	5	1																																																																																																																																										6
AACAAT/ATTGTT	1																																																																																																																																											1
AACACC/GGTGTT	2																																																																																																																																											2
AACAGC/CTGTTG	4	1		1																																																																																																																																								6
AACAGG/CCTGTT	3																																																																																																																																											3
AACATC/ATGTTG	3																																																																																																																																											3
AACATG/ATGTTC	1																																																																																																																																											1
AACCAC/GGTTGT	5																																																																																																																																											5
AACCAT/ATGGTT	1																																																																																																																																											1
AACCCC/GGGGTT	4																																																																																																																																											4
AACCCG/CGGGTT	2																																																																																																																																											2
AACCGC/CGGTTG	1																																																																																																																																											1
AACCTC/AGGTTG	1																																																																																																																																											1
AACCTG/AGGTTC	1																																																																																																																																											1
AACGAC/CGTTGT	2																																																																																																																																											2
AACGCC/CGTTGG			1																																																																																																																																									1
AACGTC/ACGTTG	1																																																																																																																																											1
AACTAC/AGTTGT	2																																																																																																																																											2
AACTAT/AGTTAT	1																																																																																																																																											1
AACTCC/AGTTGG	1																																																																																																																																											1
AACTGC/AGTTGC	1																																																																																																																																											1
AACTTC/AAGTTG	2																																																																																																																																											2
AAGAAT/ATTCTT	1																																																																																																																																											1
AAGACC/CTTGGT	1																																																																																																																																											1
AAGACG/CGTCTT	4																																																																																																																																											4
AAGAGG/CCTCTT	8	2																																																																																																																																										10
AAGATG/ATCTTC	1	2																																																																																																																																										3
AAGCAG/CTGCTT	2																																																																																																																																											2
AAGCCG/CGGCTT	1	1																																																																																																																																										2
AAGCGG/CCGCTT	1																																																																																																																																											1
AAGGAC/CCTTGT	1	1																																																																																																																																										2
AAGGAG/CCTTCT	2																																																																																																																																											2
AAGGCG/CCTTCG	1																																																																																																																																											1
AAGGGC/CCCTTG	2																																																																																																																																											2
AAGTAG/ACTTCT	1	1																																																																																																																																										2
AAGTCC/ACTTGG	2																																																																																																																																											2
AAGTGG/ACTTCC	1																																																																																																																																											1
AATAGT/ACTATT	3																																																																																																																																											3
AATATT/AATATT	12																																																																																																																																											12
AATCAC/ATTGTG	1																																																																																																																																											1
AATCAT/ATGATT	4																																																																																																																																											4
AATCCC/ATTGGG	2	1																																																																																																																																										3
AATCGC/ATTGCG	1																																																																																																																																											1
AATGAG/ATTCTC	3																																																																																																																																											3
AATGAT/ATCATT	1																																																																																																																																											1
AATGCC/ATTGGC	2																																																																																																																																											2
AATGGC/ATTGCC	1	1																																																																																																																																										2
AATGGG/ATTCCC	1																																																																																																																																											1
AATGGT/ACCATT	1																																																																																																																																											1
AATGTC/ACATTG	1																																																																																																																																											1
AATGTG/ACATTC	2																																																																																																																																											2
AATTAC/AATTGT	1																																																																																																																																											1
AATTAG/AATTCT	1																																																																																																																																											1
AATTAT/AATTAT	8	1																																																																																																																																										9
AATTCC/AATTGG	1																																																																																																																																											1
ACACAG/CTGTGT	1																																																																																																																																											1
ACACAT/ATGTGT	2																																																																																																																																											2
ACACCC/GGGTGT		1																																																																																																																																										1
ACACGC/CGTGTG	1																																																																																																																																											1
ACAGCG/CGCTGT	1																																																																																																																																											1
ACAGGG/CCCTGT	2																																																																																																																																											2
ACAGTC/ACTGTG	1																																																																																																																																											1
ACATAG/ATGTCT	1																																																																																																																																											1
ACATAT/ATATGT	2																																																																																																																																											2
ACATCT/AGATGT	1																																																																																																																																											1
ACATGC/ATGTGC	1																																																																																																																																											1
ACATGG/ATGTCC	2																																																																																																																																											2
ACATGT/ACATGT	1	1																																																																																																																																										2
ACCACG/CGTGGT	1																																																																																																																																											1
ACCACT/AGTGGT	5	1																																																																																																																																										6
ACCAGC/CTGGTG	2																																																																																																																																											2
ACCATC/ATGGTG	3																																																																																																																																											3
ACCATG/ATGGTC	1																																																																																																																																											1
ACCCCC/GGGGGT	1																																																																																																																																											1
ACCCTC/AGGGTG	1																																																																																																																																											1
ACCCTG/AGGGTC	1																																																																																																																																											1
ACCGCC/CGGTGG	4																																																																																																																																											4
ACCGGG/CCCGGT		1																																																																																																																																										1
ACCGTC/ACGGTG	1																																																																																																																																											1
ACCTAT/AGGTAT	1																																																																																																																																											1
ACCTCC/AGGTGG	1	1																																																																																																																																										2
ACCTCG/AGGTCG	1																																																																																																																																											1
ACCTGC/AGGTGC	1																																																																																																																																											1
ACGACT/AGTCGT	1																																																																																																																																											1
ACGAGC/CGTGCT	1																																																																																																																																											1
ACGAGG/CCTCGT	5																																																																																																																																											5
ACGATC/ATCGTG	2																																																																																																																																											2
ACGATG/ATCGTC	9			1																																																																																																																																								10
ACGCAG/CGTCTG	1																																																																																																																																											1
ACGCGG/CCGCGT	1																																																																																																																																											1
ACGCTC/AGCGTG	1																																																																																																																																											1
ACGCTG/AGCGTC	2																																																																																																																																											2
ACGGAG/CCGTCT	1																																																																																																																																											1
ACGGCC/CCGTGG	3																																																																																																																																											3
ACGTAG/ACGTCT	1																																																																																																																																											1
ACTATG/AGTCAT	1																																																																																																																																											1
ACTCAG/AGTCTG	1																																																																																																																																											1
ACTCAT/AGTATG	1																																																																																																																																											1
ACTCCC/AGTGGG	1																																																																																																																																											1
ACTCCG/AGTCGG	1																																																																																																																																											1
ACTCTC/AGAGTG	1																																																																																																																																											1
ACTGAT/AGTATC	1																																																																																																																																											1
ACTGCC/AGTGGC	2	1																																																																																																																																										3
ACTGCG/AGTCGC	2																																																																																																																																											2
ACTGCT/AGCAGT	2																																																																																																																																											2
AGAGCC/CTCTGG	4																																																																																																																																											4
AGAGCG/CGCTCT	2																																																																																																																																											2
AGAGCT/AGCTCT	1	1																																																																																																																																										2
AGAGGC/CCTCTG	1	1																																																																																																																																										2
AGAGGG/CCCTCT	5	2																																																																																																																																										7
AGATGC/ATCTGC	1																																																																																																																																											1
AGCAGG/CCTGCT	3	1																																																																																																																																										4
AGCATC/ATGCTG	3																																																																																																																																											3
AGCCAT/ATGGCT	1																																																																																																																																											1
AGCCCC/CTGGGG	1	1																																																																																																																																										2
AGCCCG/CGGGCT	1																																																																																																																																											1
AGCCGC/CGGCTG	5	1																																																																																																																																										6
AGCCGG/CCGGCT	3																																																																																																																																											3
AGCCTC/AGGCTG	1																																																																																																																																											1
AGCCTG/AGGCTC	3																																																																																																																																											3
AGCGAT/ATCGCT	1	1																																																																																																																																										2
AGCGCG/CGCGCT	1																																																																																																																																											1
AGCGGC/CCGCTG		2																																																																																																																																										2
AGCGGG/CCCGCT	2																																																																																																																																											2
AGCTCC/AGCTGG	4																																																																																																																																											4
AGCTGC/AGCTGC	1																																																																																																																																											1
AGGATC/ATCCTG	1																																																																																																																																											1
AGGATG/ATCCTC	9	1		1																																																																																																																																								11
AGGCCC/CCTGGG	1																																																																																																																																											1
AGGCGC/CCTGCG	1	1																																																																																																																																										2
AGGCGG/CCGCCT	2																																																																																																																																											2
AGGGAT/ATCCCT	1																																																																																																																																											1
AGGGGG/CCCCCT	2																																																																																																																																											2
ATATCC/ATATGG		1																																																																																																																																										1
ATATCG/ATATCG	1																																																																																																																																											1
ATATGC/ATATGC	1																																																																																																																																											1
ATCCCC/ATGGGG	1																																																																																																																																											1
ATCCCG/ATCGGG	2																																																																																																																																											2
ATCGCC/ATGGCG	2																																																																																																																																											2
ATCGGC/ATGCCG	2																																																																																																																																											2
CCCGCG/CGCGGG	1																																																																																																																																											1
CCGGCG/CCGGCG	1																																																																																																																																											1
