Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-8/megassr/results/hub_GCA_013145925.1/fasta/hub_GCA_013145925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           37425193
Total number of identified SSRs:                 3306
Number of SSR containing sequences:              72
Number of sequences containing more than 1 SSR:  65
Number of SSRs present in compound formation:    276


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	188
2	713
3	553
4	373
5	895
6	584

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	19	7	10	12	8	3	2	1	2	3	1	1			1	1	3	1	1	1	2				2	1				1											1														1																																																																																						85
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2			2														1																				1																																																																																																						9
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	1	1						2																																																																																																											1																							8
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	17	15	5	9	5	6	2	2	1	3	2	2	2		1	1	1	1	1					1							1			1		1	1																	1									1						1																		1																																																					1	86
AC	-	-	-	4	3	3	2	2	1	1	1	1	1	1			1						1			1																																																																																																																																				23
AG	-	-	-	33	17	12	11	5	2	2	2	1	2					2																																																																																																																																												89
AT	-	-	-	93	25	21	12	11	5	5	3	2		2			1																																																																																																																																													180
CA	-	-	-	16	3		2		2			1						1		1																																																																																																																																										26
CT	-	-	-	14	9	5	3	4	2			1		2		2																																																																																																																																														42
GA	-	-	-	20	6	5	4	1	1	3	1	1	1								1			1																																																																																																																																						45
GC	-	-	-	3			1																																																																																																																																																							4
GT	-	-	-	6	3		4	1	2	1	3								1							1										1																																																																																																																										23
TA	-	-	-	94	31	11	10	7	2	3	4	1		1	1		1																																																																																																																																													166
TC	-	-	-	35	18	10	8	4	4	1	1	1	1	2		1		2	1																																																																																																																																											89
TG	-	-	-	7	4	2	1	1			2	2	1				1		1	1		1			1	1																																																																																																																																				26
AAC	-	-	2	1																					1																																																																																																																																					4
AAG	-	-	19	8	2	3	2					1																																																																																																																																																		35
AAT	-	-	13	5	3	3		1		1																																																																																																																																																				26
ACA	-	-	2	1		1			1					1																																																																																																																																																6
ACC	-	-	3	1	1																																																																																																																																																									5
ACT	-	-	2			1	1	1															1					1																																																																																																																																		7
AGA	-	-	9	4				1																											1																																																																																																																											15
AGC	-	-	3	5	1																																																																																																																																																									9
AGG	-	-	1	1	2		2																																																																																																																																																							6
AGT	-	-	2		1																															1																																																																																																																										4
ATA	-	-	10	4	2	1	1			1																																																																																																																																																				19
ATC	-	-	2																																																																																																																																																											2
ATG	-	-	2	2		1																																																																																																																																																								5
ATT	-	-	11	3	4	1				1																																																																																																																																																				20
CAA	-	-	8	3	2		1																																																																																																																																																							14
CAC	-	-	2	2	2																																																																																																																																																									6
CAG	-	-	8																																																																																																																																																											8
CAT	-	-	4	2		1	1		1																																																																																																																																																					9
CCA	-	-	3		1																																																																																																																																																									4
CCG	-	-	3	1																																																																																																																																																										4
CCT	-	-		1	1																																																																																																																																																									2
CGA	-	-	2																																																																																																																																																											2
CGC	-	-	2																																																																																																																																																											2
CGG	-	-	1			1																																																																																																																																																								2
CGT	-	-	2																																																																																																																																																											2
CTA	-	-	3	1						1																																																																																																																																																				5
CTC	-	-	8	1	1		1																																																																																																																																																							11
CTG	-	-	5	3	2	1																																																																																																																																																								11
CTT	-	-	9	3		1	1	1		1	1			1																																																																																																																																																18
GAA	-	-	12	3	2	1																																																																																																																																																								18
GAC	-	-	2					1	1																																																																																																																																																					4
GAG	-	-	4			2			1									1																																																																																																																																												8
GAT	-	-	7				2	1				1																																																																																																																																																		11
GCA	-	-	5	2	1																																																																																																																																																									8
GCC	-	-	7	2																																																																																																																																																										9
GCG	-	-	3			1																																																																																																																																																								4
GCT	-	-		1																																																																																																																																																										1
GGA	-	-						1																																																																																																																																																						1
GGC	-	-	4	1																																																																																																																																																										5
GGT	-	-	2	4			1																																																																																																																																																							7
GTA	-	-	1	1																																																																																																																																																										2
GTC	-	-	1	1		1																																																																																																																																																								3
GTG	-	-	3																																																																																																																																																											3
GTT	-	-	1	2	2		1																																																																																																																																																							6
TAA	-	-	12	1		1	1																																																																																																																																																							15
TAC	-	-	1	1		2		1		1							1																																																																																																																																													7
TAG	-	-	4	3																																																																																																																																																										7
TAT	-	-	15	12	3			1	2		1				1																																																																																																																																															35
TCA	-	-	5	3	1						1																																																																																																																																																			10
TCC	-	-	5	1	2	2																																																																																																																																																								10
TCG	-	-	2	1																																																																																																																																																										3
TCT	-	-	3	5	2		1			1											1				1																																																																																																																																					14
TGA	-	-	3	4	1								1																																																																																																																																																	9
TGC	-	-	6	3	2	3		2																																																																																																																																																						16
TGG	-	-	7					1																																																																																																																																																						8
TGT	-	-	4	1	2	1			1																																																																																																																																																					9
TTA	-	-	13	8	3	2		1		1																																																																																																																																																				28
TTC	-	-	5	6	3	1	1	2		1	2				2				1																																																																																																																																											24
TTG	-	-	1	4																																																																																																																																																										5
AAAC	-	1																																																																																																																																																												1
AAAG	-	16	11	1	1		1																																																																																																																																																							30
AAAT	-	14	4																																																																																																																																																											18
AAGA	-	4	1	2																																																																																																																																																										7
AATA	-	6					1																																																																																																																																																							7
AATC	-	5																																																																																																																																																												5
AATG	-		1																																																																																																																																																											1
AATT	-	8				1																																																																																																																																																								9
ACAG	-		1																																																																																																																																																											1
ACAT	-	4			1																																																																																																																																																									5
ACCG	-	1																																																																																																																																																												1
AGAA	-	7	1	1	2																																																																																																																																																									11
AGAT	-			1																																																																																																																																																										1
AGGA	-	1																																																																																																																																																												1
AGGG	-	1																																																																																																																																																												1
AGTC	-	1																																																																																																																																																												1
ATAA	-	6	1	1																																																																																																																																																										8
ATAC	-	4		2																																																																																																																																																										6
ATAG	-	1	1																																																																																																																																																											2
ATCA	-	2	1																																																																																																																																																											3
ATCT	-	1																																																																																																																																																												1
ATGA	-	1		1																																																																																																																																																										2
ATGT	-	4	1	1																																																																																																																																																										6
ATTA	-	1			1																																																																																																																																																									2
ATTC	-	1																																																																																																																																																												1
ATTG	-	1																																																																																																																																																												1
ATTT	-	8	2			1																																																																																																																																																								11
CAAA	-	1																																																																																																																																																												1
CAAG	-	1																																																																																																																																																												1
CAAT	-		1																																																																																																																																																											1
CACG	-						1																																																																																																																																																							1
CACT	-	2																																																																																																																																																												2
CATA	-	3	1	1		1																																																																																																																																																								6
CATC	-	2																																																																																																																																																												2
CCAT	-	1																																																																																																																																																												1
CCTA	-	1					1																																																																																																																																																							2
CTAC	-	1																																																																																																																																																												1
CTAT	-	2																																																																																																																																																												2
CTTC	-	1	1																																																																																																																																																											2
CTTT	-	2	7	1			1																																																																																																																																																							11
GAAA	-	3	2	1										1																																																																																																																																																7
GAAT	-	1	1																																																																																																																																																											2
GAGC	-	1																																																																																																																																																												1
GAGT	-	1			1																																																																																																																																																									2
GATA	-	1																																																																																																																																																												1
GATG	-	1																																																																																																																																																												1
GATT	-	1			1																																																																																																																																																									2
GCCA	-	1																																																																																																																																																												1
GGAA	-	1																																																																																																																																																												1
GGAG	-	1																																																																																																																																																												1
GGAT	-	1																																																																																																																																																												1
GGTA	-		1																																																																																																																																																											1
GGTT	-			1																																																																																																																																																										1
GTAT	-	5	2																																																																																																																																																											7
GTCA	-	1																																																																																																																																																												1
GTCT	-	1																																																																																																																																																												1
GTGA	-	2																																																																																																																																																												2
TAAA	-	8	1																																																																																																																																																											9
TAAC	-	1			1																																																																																																																																																									2
TAAT	-	1																																																																																																																																																												1
TACA	-	3	4	3	1																																																																																																																																																									11
TACC	-		1																																																																																																																																																											1
TACT	-	1																																																																																																																																																												1
TAGC	-	1																																																																																																																																																												1
TAGT	-	1																																																																																																																																																												1
TATC	-				1																																																																																																																																																									1
TATG	-	1	1					1																																																																																																																																																						3
TATT	-	8	1																																																																																																																																																											9
TCAA	-	2	1		1																																																																																																																																																									4
TCAC	-	1																																																																																																																																																												1
TCAT	-	2																																																																																																																																																												2
TCCA	-		1																																																																																																																																																											1
TCCT	-	1																																																																																																																																																												1
TCTA	-	2	1																																																																																																																																																											3
TCTG	-			1																																																																																																																																																										1
TCTT	-	4	1	2	1																																																																																																																																																									8
TGAG	-	2																																																																																																																																																												2
TGAT	-	1	1																																																																																																																																																											2
TGCA	-	1																																																																																																																																																												1
TGTA	-	6	2				1																																																																																																																																																							9
TTAA	-	4																																																																																																																																																												4
TTAT	-	12	2		1																																																																																																																																																									15
TTCA	-	1																																																																																																																																																												1
TTCT	-	6	1	1																																																																																																																																																										8
TTGA	-	5	1	1																																																																																																																																																										7
TTGC	-	1																																																																																																																																																												1
TTGG	-	1																																																																																																																																																												1
TTTA	-	13	5	2			2																																																																																																																																																							22
TTTC	-	12	8	4	1		1	2			1																																																																																																																																																			29
TTTG	-	1																																																																																																																																																												1
AAAAC	4	1	1																																																																																																																																																											6
AAAAG	39	16	8	1						1																																																																																																																																																				65
AAAAT	32	10	3	1														1																																																																																																																																												47
AAACA	1																																																																																																																																																													1
AAACC	1																																																																																																																																																													1
AAACG		1																																																																																																																																																												1
AAAGA	12	1	1																																																																																																																																																											14
AAAGG	4																																																																																																																																																													4
AAATA	7	4																																																																																																																																																												11
AAATC	2		1																																																																																																																																																											3
AAATG	4																																																																																																																																																													4
AAATT	5																																																																																																																																																													5
AACAA	2																																																																																																																																																													2
AACCC	1																																																																																																																																																													1
AACTA	1																																																																																																																																																													1
AAGAA	15	5																																																																																																																																																												20
AAGAC	1																																																																																																																																																													1
AAGAG	1																																																																																																																																																													1
AAGGA	1																																																																																																																																																													1
AAGGG	2																																																																																																																																																													2
AAGTC	1																																																																																																																																																													1
AAGTG	1																																																																																																																																																													1
AATAA	8	1																																																																																																																																																												9
AATAC	1																																																																																																																																																													1
AATAT	5																																																																																																																																																													5
AATCC	1																																																																																																																																																													1
AATGA	1																																																																																																																																																													1
AATTA	2																																																																																																																																																													2
AATTC	1																																																																																																																																																													1
AATTT	2																																																																																																																																																													2
ACAAC	2																																																																																																																																																													2
ACACC	1																																																																																																																																																													1
ACACG	1																																																																																																																																																													1
ACAGC	1																																																																																																																																																													1
ACATA	1																																																																																																																																																													1
ACATC	1																																																																																																																																																													1
ACCAA	1																																																																																																																																																													1
ACCCT		1																																																																																																																																																												1
ACCTG	1																																																																																																																																																													1
ACGAA	1																																																																																																																																																													1
ACTAG	2																																																																																																																																																													2
ACTGT	1																																																																																																																																																													1
ACTTG	2																																																																																																																																																													2
AGAAA	15	1																																																																																																																																																												16
AGAAG	4																																																																																																																																																													4
AGACA	1																																																																																																																																																													1
AGACT		1																																																																																																																																																												1
AGAGA	3																																																																																																																																																													3
AGATC		1																																																																																																																																																												1
AGATG	2																																																																																																																																																													2
AGCAA		1																																																																																																																																																												1
AGCCA	1																																																																																																																																																													1
AGCCC	1																																																																																																																																																													1
AGCCG	1																																																																																																																																																													1
AGCTG	1																																																																																																																																																													1
AGGAA	2																																																																																																																																																													2
AGGCG	1																																																																																																																																																													1
AGGGA	3																																																																																																																																																													3
AGGGG	1																																																																																																																																																													1
AGGTG	1																																																																																																																																																													1
AGGTT	1																																																																																																																																																													1
AGTAC	2																																																																																																																																																													2
AGTCA	1																																																																																																																																																													1
AGTGT		1																																																																																																																																																												1
ATAAA	15	2																																																																																																																																																												17
ATAAT	1																																																																																																																																																													1
ATAGT	1																																																																																																																																																													1
ATATA	3																																																																																																																																																													3
ATATC	1																																																																																																																																																													1
ATATT	8																																																																																																																																																													8
ATCAT	1																																																																																																																																																													1
ATCCA	1																																																																																																																																																													1
ATCCC	3																																																																																																																																																													3
ATCCT	2																																																																																																																																																													2
ATCTA	1																																																																																																																																																													1
ATGAT	1																																																																																																																																																													1
ATGCA	1	1																																																																																																																																																												2
ATGGG		1																																																																																																																																																												1
ATTAA	11		1																																																																																																																																																											12
ATTAT	2																																																																																																																																																													2
ATTCA	1																																																																																																																																																													1
ATTGC	1																																																																																																																																																													1
ATTTA	2																																																																																																																																																													2
ATTTC	3																																																																																																																																																													3
ATTTG	2																																																																																																																																																													2
ATTTT	6	3	1																								1																																																																																																																																			11
CAAAA	1																																																																																																																																																													1
CAAAT	1																																																																																																																																																													1
CAAGA		1																																																																																																																																																												1
CAATA	1																																																																																																																																																													1
CAATT	1																																																																																																																																																													1
CACAT	1																																																																																																																																																													1
CACCC	1																																																																																																																																																													1
CAGAT		1																																																																																																																																																												1
CATCT	1		1																																																																																																																																																											2
CATGT	2																																																																																																																																																													2
CATTT	1																																																																																																																																																													1
CCAAA	1																																																																																																																																																													1
CCAAC	2																																																																																																																																																													2
CCAAT	1																																																																																																																																																													1
CCAGT		1																																																																																																																																																												1
CCATA	1																																																																																																																																																													1
CCATT		1																																																																																																																																																												1
CCCAA	2																																																																																																																																																													2
CCCAT	2																																																																																																																																																													2
CCCCT	2																																																																																																																																																													2
CCCGA	1																																																																																																																																																													1
CCCTC	2																																																																																																																																																													2
CCCTT	1																																																																																																																																																													1
CCGGT	1																																																																																																																																																													1
CCGTA	1																																																																																																																																																													1
CCGTG	1																																																																																																																																																													1
CCTAA		1																																																																																																																																																												1
CCTCC		1																																																																																																																																																												1
CCTCT	2																																																																																																																																																													2
CCTTC	2																																																																																																																																																													2
CCTTT	3																																																																																																																																																													3
CGACA	1																																																																																																																																																													1
CGTCT	1	1																																																																																																																																																												2
CGTTG	1																																																																																																																																																													1
CTAAA	1																																																																																																																																																													1
CTATC	2																																																																																																																																																													2
CTATG	1																																																																																																																																																													1
CTCAT	2																																																																																																																																																													2
CTCCA	1																																																																																																																																																													1
CTCCG	1																																																																																																																																																													1
CTCTA	1																																																																																																																																																													1
CTGCC	1																																																																																																																																																													1
CTGTA	1																																																																																																																																																													1
CTTCC	1																																																																																																																																																													1
CTTCT	2																																																																																																																																																													2
CTTTC	2																																																																																																																																																													2
CTTTG	3	1																																																																																																																																																												4
CTTTT	16	3		1																																																																																																																																																										20
GAAAA	15	4																																																																																																																																																												19
GAAAC	1																																																																																																																																																													1
GAAAG	1																																																																																																																																																													1
GAAAT			1																																																																																																																																																											1
GAACC	1																																																																																																																																																													1
GAAGA	1																																																																																																																																																													1
GAATA	1																																																																																																																																																													1
GAATG	1																																																																																																																																																													1
GAATT	1																																																																																																																																																													1
GACAA	1																																																																																																																																																													1
GACCT	1																																																																																																																																																													1
GACGG	1																																																																																																																																																													1
GAGAA	2																																																																																																																																																													2
GAGAT	2	2																																																																																																																																																												4
GAGCC	1																																																																																																																																																													1
GAGGA	1																																																																																																																																																													1
GATAA	1																																																																																																																																																													1
GATGC	1																																																																																																																																																													1
GATGT	1																																																																																																																																																													1
GATTG	2																																																																																																																																																													2
GCCTC	1																																																																																																																																																													1
GCGTG	1																																																																																																																																																													1
GCTCA	2																																																																																																																																																													2
GCTGA	2																																																																																																																																																													2
GGAAA	3																																																																																																																																																													3
GGAAG		1																																																																																																																																																												1
GGAAT	1																																																																																																																																																													1
GGACA	1																																																																																																																																																													1
GGCTG	1																																																																																																																																																													1
GGGAC	1		1																																																																																																																																																											2
GGGAG	2																																																																																																																																																													2
GGGGA	1																																																																																																																																																													1
GGGTG	1																																																																																																																																																													1
GGGTT	1																																																																																																																																																													1
GGTAT	2																																																																																																																																																													2
GGTCT		1																																																																																																																																																												1
GGTTC	1																																																																																																																																																													1
GGTTG	1																																																																																																																																																													1
GGTTT	1																																																																																																																																																													1
GTACA	2																																																																																																																																																													2
GTACT	1																																																																																																																																																													1
GTATG	2																																																																																																																																																													2
GTCCT	1																																																																																																																																																													1
GTCGA		1																																																																																																																																																												1
GTCTA	1																																																																																																																																																													1
GTCTC	1																																																																																																																																																													1
GTCTG	1																																																																																																																																																													1
GTGTA	1																																																																																																																																																													1
GTTAG	1																																																																																																																																																													1
GTTGA	1																																																																																																																																																													1
GTTGG	1																																																																																																																																																													1
GTTGT	1																																																																																																																																																													1
GTTTA	1																																																																																																																																																													1
GTTTT	1																																																																																																																																																													1
TAAAA	12	2		1																																																																																																																																																										15
TAAAT	2																																																																																																																																																													2
TAACA	1																																																																																																																																																													1
TAATA	3																																																																																																																																																													3
TAATG	1																																																																																																																																																													1
TAATT	7	1																																																																																																																																																												8
TACAA	1																																																																																																																																																													1
TACAT	1																																																																																																																																																													1
TACCA	1																																																																																																																																																													1
TACCC	1																																																																																																																																																													1
TACGG	2																																																																																																																																																													2
TACTG	1																																																																																																																																																													1
TAGAA	1																																																																																																																																																													1
TAGAT	1																																																																																																																																																													1
TAGCA	1																																																																																																																																																													1
TAGCT	1																																																																																																																																																													1
TAGGT	1																																																																																																																																																													1
TAGTA	1																																																																																																																																																													1
TAGTT	1																																																																																																																																																													1
TATAA	1																																																																																																																																																													1
TATAT	3																																																																																																																																																													3
TATCA	1																																																																																																																																																													1
TATCG	1																																																																																																																																																													1
TATGG	1																																																																																																																																																													1
TATTA	3																																																																																																																																																													3
TATTG	1																																																																																																																																																													1
TATTT	12	2																																																																																																																																																												14
TCAAA	1																																																																																																																																																													1
TCACA	1																																																																																																																																																													1
TCATA	1																																																																																																																																																													1
TCATC	1	1																																																																																																																																																												2
TCATT		1																																																																																																																																																												1
TCCAA	1																																																																																																																																																													1
TCCTA	1																																																																																																																																																													1
TCCTC	3																																																																																																																																																													3
TCCTG	1																																																																																																																																																													1
TCGCC		1																																																																																																																																																												1
TCGGT	1																																																																																																																																																													1
TCTAT		1																																																																																																																																																												1
TCTCC	1																																																																																																																																																													1
TCTCG	1																																																																																																																																																													1
TCTCT	1	1	1																																																																																																																																																											3
TCTTC	2																																																																																																																																																													2
TCTTT	14	4	1		1																																																																																																																																																									20
TGACA	1	1																																																																																																																																																												2
TGAGA	1																																																																																																																																																													1
TGAGC	1																																																																																																																																																													1
TGATA	2																																																																																																																																																													2
TGATT	1		1																																																																																																																																																											2
TGGAT	1																																																																																																																																																													1
TGGGT	2																																																																																																																																																													2
TGTAC	2																																																																																																																																																													2
TGTCA	1																																																																																																																																																													1
TGTCT	1																																																																																																																																																													1
TGTTG	1																																																																																																																																																													1
TGTTT		1																																																																																																																																																												1
TTAAA	7																																																																																																																																																													7
TTAAT	9																																																																																																																																																													9
TTACT	1																																																																																																																																																													1
TTATA	3																																																																																																																																																													3
TTATT	11	3	1																																																																																																																																																											15
TTCAG	1																																																																																																																																																													1
TTCAT	1																																																																																																																																																													1
TTCCC	1																																																																																																																																																													1
TTCCT	2																																																																																																																																																													2
TTCTT	13	4	2																																																																																																																																																											19
TTGAA	1	1																																																																																																																																																												2
TTGAG	1																																																																																																																																																													1
TTGCA	2	1																																																																																																																																																												3
TTGCG	1																																																																																																																																																													1
TTGGT	1																																																																																																																																																													1
TTTAA	7																																																																																																																																																													7
TTTAC	1																																																																																																																																																													1
TTTAG	1																																																																																																																																																													1
TTTAT	26	2																																																																																																																																																												28
TTTCA	1																																																																																																																																																													1
TTTCC	7																																																																																																																																																													7
TTTCT	13	4	1							1																																																																																																																																																				19
TTTGT	1																																																																																																																																																													1
TTTTA	25	3	2			1							1																																																																																																																																																	32
TTTTC	55	15	1	2																																																																																																																																																										73
TTTTG	3	1																																																																																																																																																												4
AAAAAG	19	2	1	1																																																																																																																																																										23
AAAAAT	10	3																																																																																																																																																												13
AAAACA		1																																																																																																																																																												1
AAAAGA	7	3																																																																																																																																																												10
AAAAGG	1	1																																																																																																																																																												2
AAAAGT	1																																																																																																																																																													1
AAAATA	12		1																																																																																																																																																											13
AAAATG	3																																																																																																																																																													3
AAAATT	1																																																																																																																																																													1
AAACCA	1																																																																																																																																																													1
AAAGAA	7																																																																																																																																																													7
AAAGAG	1																																																																																																																																																													1
AAAGGG	1																																																																																																																																																													1
AAAGTG	1																																																																																																																																																													1
AAATAA	7																																																																																																																																																													7
AAATAG	1																																																																																																																																																													1
AAATCC	1																																																																																																																																																													1
AAATCT	1																																																																																																																																																													1
AAATTA	1																																																																																																																																																													1
AAATTG	1																																																																																																																																																													1
AACCAC	1																																																																																																																																																													1
AACGGA	1																																																																																																																																																													1
AAGAAA	2																																																																																																																																																													2
AAGAAC	2																																																																																																																																																													2
AATAAA	4		1																																																																																																																																																											5
AATACC	1																																																																																																																																																													1
AATCTA	1																																																																																																																																																													1
AATGAA	2																																																																																																																																																													2
AATGAG	1																																																																																																																																																													1
AATGTA		1																																																																																																																																																												1
AATTAA	3																																																																																																																																																													3
AATTTA	1																																																																																																																																																													1
AATTTT	1																																																																																																																																																													1
ACAACC	1																																																																																																																																																													1
ACAAGA		1																																																																																																																																																												1
ACAATC	1																																																																																																																																																													1
ACCACT								1																																																																																																																																																						1
ACCAGC	1																																																																																																																																																													1
ACCCAA	1																																																																																																																																																													1
ACTTGG	1																																																																																																																																																													1
AGAAAA	2																																																																																																																																																													2
AGAAAG	1		1																																																																																																																																																											2
AGACAC	1																																																																																																																																																													1
AGAGAA	1																																																																																																																																																													1
AGCGTC	1																																																																																																																																																													1
AGCTCT	1		1																																																																																																																																																											2
AGGAAA	1																																																																																																																																																													1
AGGCGG	1																																																																																																																																																													1
AGGGCA	1																																																																																																																																																													1
AGGTGC	1																																																																																																																																																													1
AGTAGA	1																																																																																																																																																													1
AGTATC	1																																																																																																																																																													1
AGTATG	1																																																																																																																																																													1
AGTCCA	1																																																																																																																																																													1
AGTGAG	1																																																																																																																																																													1
AGTGCG	1																																																																																																																																																													1
AGTGGC	1																																																																																																																																																													1
ATAAAA	2																																																																																																																																																													2
ATAAAG	1																																																																																																																																																													1
ATAACT	1																																																																																																																																																													1
ATAATC	1																																																																																																																																																													1
ATAATT	2																																																																																																																																																													2
ATAGTA	1																																																																																																																																																													1
ATAGTC	1																																																																																																																																																													1
ATATAA	1																																																																																																																																																													1
ATATTA	1																																																																																																																																																													1
ATCCAT	1																																																																																																																																																													1
ATCCCA		1																																																																																																																																																												1
ATCCTC	1																																																																																																																																																													1
ATCGCC	1																																																																																																																																																													1
ATCGTG	1																																																																																																																																																													1
ATGACC	1																																																																																																																																																													1
ATGACG	1																																																																																																																																																													1
ATGAGA	1																																																																																																																																																													1
ATGCCA	2																																																																																																																																																													2
ATGCTG	1																																																																																																																																																													1
ATGTCT	1																																																																																																																																																													1
ATTAAT	4																																																																																																																																																													4
ATTATA	3																																																																																																																																																													3
ATTCAC	1																																																																																																																																																													1
ATTCTC	1																																																																																																																																																													1
ATTTAA	1	1																																																																																																																																																												2
ATTTAT	1																																																																																																																																																													1
ATTTTC	1																																																																																																																																																													1
ATTTTT	2																																																																																																																																																													2
CAACAG		1	1																																																																																																																																																											2
CAACAT	1																																																																																																																																																													1
CAAGAA	2																																																																																																																																																													2
CACACC		1																																																																																																																																																												1
CACATA	1																																																																																																																																																													1
CACATC	1																																																																																																																																																													1
CACCAA	1																																																																																																																																																													1
CACGGC	1																																																																																																																																																													1
CACTAC								1																																																																																																																																																						1
CAGCAA	1																																																																																																																																																													1
CAGCCC		1																																																																																																																																																												1
CAGCCG	1																																																																																																																																																													1
CAGCTC	1																																																																																																																																																													1
CAGGAA	1																																																																																																																																																													1
CAGGCT	1																																																																																																																																																													1
CATAAT	1																																																																																																																																																													1
CATAGC	1																																																																																																																																																													1
CATCAC	1																																																																																																																																																													1
CATCAG	1																																																																																																																																																													1
CATCCT		1																																																																																																																																																												1
CATCGT	1																																																																																																																																																													1
CATGTG	1																																																																																																																																																													1
CCAAAC	1																																																																																																																																																													1
CCAAGA	1																																																																																																																																																													1
CCACAA	1																																																																																																																																																													1
CCACCT		1																																																																																																																																																												1
CCACTT	1																																																																																																																																																													1
CCAGCA	1																																																																																																																																																													1
CCATGT	1																																																																																																																																																													1
CCATTA	1																																																																																																																																																													1
CCATTC	1																																																																																																																																																													1
CCCAAT		1																																																																																																																																																												1
CCCCAC	1																																																																																																																																																													1
CCCCCT	1																																																																																																																																																													1
CCGAAC	2																																																																																																																																																													2
CCGAGA	1																																																																																																																																																													1
CCGATG	1																																																																																																																																																													1
CCGGCT	1																																																																																																																																																													1
CCGTGG	1																																																																																																																																																													1
CCTCCG	1																																																																																																																																																													1
CCTCTC		1																																																																																																																																																												1
CCTCTG	1																																																																																																																																																													1
CCTCTT	1																																																																																																																																																													1
CCTGCG		1																																																																																																																																																												1
CCTTGC	1																																																																																																																																																													1
CCTTTT	1																																																																																																																																																													1
CGACCT	1																																																																																																																																																													1
CGACTC	1																																																																																																																																																													1
CGAGGA	1																																																																																																																																																													1
CGATAG		1																																																																																																																																																												1
CGATCA	1																																																																																																																																																													1
CGATCC	1																																																																																																																																																													1
CGATGA	1																																																																																																																																																													1
CGCACA	1																																																																																																																																																													1
CGCAGC	1																																																																																																																																																													1
CGCCTC	1																																																																																																																																																													1
CGGCTC	1																																																																																																																																																													1
CGGTGC		1																																																																																																																																																												1
CGTCTC	1																																																																																																																																																													1
CTACCA		1																																																																																																																																																												1
CTATAC	1																																																																																																																																																													1
CTCAGA	1																																																																																																																																																													1
CTCATC	2																																																																																																																																																													2
CTCTCC	1																																																																																																																																																													1
CTCTTC	1																																																																																																																																																													1
CTCTTT		1																																																																																																																																																												1
CTGCCG		1																																																																																																																																																												1
CTGCTA	1																																																																																																																																																													1
CTGCTC	1																																																																																																																																																													1
CTGGCT	1																																																																																																																																																													1
CTGGGG	1																																																																																																																																																													1
CTTTTC	1																																																																																																																																																													1
CTTTTT	4	2																																																																																																																																																												6
GAAAAA	4																																																																																																																																																													4
GAAAAT	1																																																																																																																																																													1
GAAAGG	1																																																																																																																																																													1
GAAATG	1																																																																																																																																																													1
GAAGAC	2																																																																																																																																																													2
GAAGAG	2																																																																																																																																																													2
GAATTA	1																																																																																																																																																													1
GAATTG	1																																																																																																																																																													1
GACAAC	2																																																																																																																																																													2
GACAGC	1																																																																																																																																																													1
GACGAG	1																																																																																																																																																													1
GACTGC	1																																																																																																																																																													1
GAGAAA	1																																																																																																																																																													1
GAGCAG	1																																																																																																																																																													1
GAGCCA	1																																																																																																																																																													1
GAGCCT	1																																																																																																																																																													1
GAGGAA	2	1																																																																																																																																																												3
GAGGAC	1																																																																																																																																																													1
GAGGAT	3																																																																																																																																																													3
GAGGGA	2		1																																																																																																																																																											3
GAGGTG	1																																																																																																																																																													1
GAGTGG	1																																																																																																																																																													1
GATAGG	1																																																																																																																																																													1
GATATC	1																																																																																																																																																													1
GATGAC	1																																																																																																																																																													1
GATGAG	1		1																																																																																																																																																											2
GATGGT	1																																																																																																																																																													1
GATTAT	1																																																																																																																																																													1
GCAACA	1																																																																																																																																																													1
GCAATG	1																																																																																																																																																													1
GCAGAA	1																																																																																																																																																													1
GCAGCC	1																																																																																																																																																													1
GCAGTA	1																																																																																																																																																													1
GCCACG	1																																																																																																																																																													1
GCCAGT	1																																																																																																																																																													1
GCCATC	1																																																																																																																																																													1
GCCGAT	1																																																																																																																																																													1
GCCGCT		1																																																																																																																																																												1
GCCTGA	1																																																																																																																																																													1
GCGATT	1																																																																																																																																																													1
GCGCCT	1																																																																																																																																																													1
GCGCGG	1																																																																																																																																																													1
GCGCTC	1																																																																																																																																																													1
GCGGCT		1																																																																																																																																																												1
GCGTCA	1																																																																																																																																																													1
GCTCCC	1																																																																																																																																																													1
GCTCCT		1																																																																																																																																																												1
GCTCTC	1																																																																																																																																																													1
GCTGCA	1																																																																																																																																																													1
GCTGCG	2																																																																																																																																																													2
GCTGGA	1																																																																																																																																																													1
GCTTCC	1																																																																																																																																																													1
GCTTCG	1																																																																																																																																																													1
GCTTCT	1																																																																																																																																																													1
GCTTTT	1																																																																																																																																																													1
GGAAAT		1																																																																																																																																																												1
GGACAG	1																																																																																																																																																													1
GGACGC	1																																																																																																																																																													1
GGAGAA	1																																																																																																																																																													1
GGAGGG	1																																																																																																																																																													1
GGCGGT	1																																																																																																																																																													1
GGCTCC	2																																																																																																																																																													2
GGCTCG	1	1																																																																																																																																																												2
GGCTCT	1																																																																																																																																																													1
GGCTGC	1	1																																																																																																																																																												2
GGGACC		1																																																																																																																																																												1
GGGAGA	1																																																																																																																																																													1
GGGGAT	1																																																																																																																																																													1
GGGTTG	1	1																																																																																																																																																												2
GGTGAC	1																																																																																																																																																													1
GGTGAG		1																																																																																																																																																												1
GGTGGC	1																																																																																																																																																													1
GGTTAT	1																																																																																																																																																													1
GGTTTG	1																																																																																																																																																													1
GTACAT		1																																																																																																																																																												1
GTAGCA	1																																																																																																																																																													1
GTAGTC	1																																																																																																																																																													1
GTCAAA	1																																																																																																																																																													1
GTCATC	1																																																																																																																																																													1
GTCCAT	1																																																																																																																																																													1
GTGATT	1																																																																																																																																																													1
GTGCTC	1																																																																																																																																																													1
GTGGCA	1																																																																																																																																																													1
GTGGTC	1																																																																																																																																																													1
GTGTAT	1																																																																																																																																																													1
GTGTTG		1																																																																																																																																																												1
GTTCAT	1																																																																																																																																																													1
GTTCCT	1																																																																																																																																																													1
GTTGAC	1																																																																																																																																																													1
GTTGGC			1																																																																																																																																																											1
GTTGGG	1																																																																																																																																																													1
GTTTGG	1																																																																																																																																																													1
GTTTTG	1																																																																																																																																																													1
GTTTTT	1																																																																																																																																																													1
TAAAAA		2	1																																																																																																																																																											3
TAATAT	1																																																																																																																																																													1
TAATTA	2																																																																																																																																																													2
TAATTG	1																																																																																																																																																													1
TAGTAA	1																																																																																																																																																													1
TATAAA	1																																																																																																																																																													1
TATAAT	1	1																																																																																																																																																												2
TATATG	2																																																																																																																																																													2
TATTAA	2																																																																																																																																																													2
TATTTC	1																																																																																																																																																													1
TATTTT	8	1																																																																																																																																																												9
TCACAT	1																																																																																																																																																													1
TCACCA	1																																																																																																																																																													1
TCAGCC	1																																																																																																																																																													1
TCAGGA	1																																																																																																																																																													1
TCAGGT	1																																																																																																																																																													1
TCATCG	1																																																																																																																																																													1
TCATTT	1																																																																																																																																																													1
TCCAGC	2																																																																																																																																																													2
TCCCTC	1																																																																																																																																																													1
TCCCTG	1																																																																																																																																																													1
TCCTCG	2																																																																																																																																																													2
TCCTCT	1																																																																																																																																																													1
TCGAGA	1																																																																																																																																																													1
TCGATC	1																																																																																																																																																													1
TCGCAG	1																																																																																																																																																													1
TCGGCT			1																																																																																																																																																											1
TCGGGA	1																																																																																																																																																													1
TCGTCA	4																																																																																																																																																													4
TCGTCT	1																																																																																																																																																													1
TCTACG		1																																																																																																																																																												1
TCTACT		1																																																																																																																																																												1
TCTCGC	1																																																																																																																																																													1
TCTGCG	1																																																																																																																																																													1
TCTGGC	1																																																																																																																																																													1
TCTGTC	1																																																																																																																																																													1
TCTGTT		1																																																																																																																																																												1
TCTTCA		1																																																																																																																																																												1
TCTTCC	2																																																																																																																																																													2
TCTTCG	1																																																																																																																																																													1
TCTTTA	1																																																																																																																																																													1
TCTTTC	1																																																																																																																																																													1
TCTTTG	1																																																																																																																																																													1
TCTTTT	7		1																																																																																																																																																											8
TGAAGA	1																																																																																																																																																													1
TGACAT	1																																																																																																																																																													1
TGACCC	1																																																																																																																																																													1
TGAGCG	1																																																																																																																																																													1
TGAGGA	1																																																																																																																																																													1
TGATGC	1																																																																																																																																																													1
TGATGT	2																																																																																																																																																													2
TGATTA	1																																																																																																																																																													1
TGCAAC	1																																																																																																																																																													1
TGCAGA	1																																																																																																																																																													1
TGCATA	1																																																																																																																																																													1
TGCCAC		1																																																																																																																																																												1
TGCGGT	1																																																																																																																																																													1
TGCTGT	1	1																																																																																																																																																												2
TGCTTC	1																																																																																																																																																													1
TGCTTT	2																																																																																																																																																													2
TGGGGT	1																																																																																																																																																													1
TGGTAG	1																																																																																																																																																													1
TGGTGA	1																																																																																																																																																													1
TGGTGT	1																																																																																																																																																													1
TGGTTG	1																																																																																																																																																													1
TGTACA	1																																																																																																																																																													1
TGTAGT	1																																																																																																																																																													1
TGTATA	1																																																																																																																																																													1
TGTCCT	1																																																																																																																																																													1
TGTCGT	1																																																																																																																																																													1
TGTGAC	1																																																																																																																																																													1
TGTTCC	1																																																																																																																																																													1
TGTTTT	2																																																																																																																																																													2
TTAAAA	1																																																																																																																																																													1
TTAATA	8																																																																																																																																																													8
TTAATT	1																																																																																																																																																													1
TTATTT	1																																																																																																																																																													1
TTCAAC	1																																																																																																																																																													1
TTCCTC	1	1																																																																																																																																																												2
TTCCTT	1																																																																																																																																																													1
TTCTCT	1																																																																																																																																																													1
TTCTTA	1																																																																																																																																																													1
TTCTTT	5	3																																																																																																																																																												8
TTGAGG	1																																																																																																																																																													1
TTGATT	1																																																																																																																																																													1
TTGCCA	1																																																																																																																																																													1
TTGGGG	1																																																																																																																																																													1
TTGGGT	1																																																																																																																																																													1
TTGTAG	1																																																																																																																																																													1
TTGTGT	1																																																																																																																																																													1
TTGTTA	1																																																																																																																																																													1
TTTACC	1																																																																																																																																																													1
TTTATT	9	1	1																																																																																																																																																											11
TTTCCC	1																																																																																																																																																													1
TTTCCT	1																																																																																																																																																													1
TTTCTA	1																																																																																																																																																													1
TTTCTC	1																																																																																																																																																													1
TTTCTT	6																																																																																																																																																													6
TTTGGG	1																																																																																																																																																													1
TTTGTT	1																																																																																																																																																													1
TTTTAC	1																																																																																																																																																													1
TTTTAT	7		1																																																																																																																																																											8
TTTTCC	2																																																																																																																																																													2
TTTTCT	7	2			1																																																																																																																																																									10
TTTTGA			1																																																																																																																																																											1
TTTTTA	14	2	1																																																																																																																																																											17
TTTTTC	10	1	1	1																																																																																																																																																										13

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	36	22	15	21	13	9	4	3	3	6	3	3	2		2	2	4	2	2	1	2			1	2	1				1	1			1		1	1				1													1	1								1						1																		1																																																					1	171
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	3	1	1	3						2								1																				1																																																																															1																							17
AC/GT	-	-	-	33	13	5	9	4	5	2	6	4	2	1			2	1	2	2		1	1		1	3										1																																																																																																																										98
AG/CT	-	-	-	102	50	32	26	14	9	6	4	4	4	4		3		4	1		1			1																																																																																																																																						265
AT/AT	-	-	-	187	56	32	22	18	7	8	7	3		3	1		2																																																																																																																																													346
CG/CG	-	-	-	3			1																																																																																																																																																							4
AAC/GTT	-	-	18	12	6	2	2		2					1											1																																																																																																																																					44
AAG/CTT	-	-	57	29	9	6	5	4		3	3	1		1	2				1		1				1										1																																																																																																																											124
AAT/ATT	-	-	74	33	15	8	2	3	2	4	1				1																																																																																																																																															143
ACC/GGT	-	-	20	7	4		1	1																																																																																																																																																						33
ACG/CGT	-	-	9	2		1		1	1																																																																																																																																																					14
ACT/AGT	-	-	13	6	1	3	1	2		2							1						1					1								1																																																																																																																										32
AGC/CTG	-	-	27	14	6	4		2																																																																																																																																																						53
AGG/CCT	-	-	18	4	6	4	3	1	1									1																																																																																																																																												38
ATC/ATG	-	-	23	11	2	2	3	1	1		1	1	1																																																																																																																																																	46
CCG/CGG	-	-	20	4		2																																																																																																																																																								26
AAAC/GTTT	-	3																																																																																																																																																												3
AAAG/CTTT	-	54	32	13	5		3	2			1			1																																																																																																																																																111
AAAT/ATTT	-	75	16	3	1	1	3																																																																																																																																																							99
AACC/GGTT	-	1		1																																																																																																																																																										2
AACT/AGTT	-	2			1																																																																																																																																																									3
AAGC/CTTG	-	2																																																																																																																																																												2
AAGG/CCTT	-	4	1																																																																																																																																																											5
AAGT/ACTT	-	1																																																																																																																																																												1
AATC/ATTG	-	17	5	1	2																																																																																																																																																									25
AATG/ATTC	-	6	2	1																																																																																																																																																										9
AATT/AATT	-	14			1	1																																																																																																																																																								16
ACAG/CTGT	-	1	1	1																																																																																																																																																										3
ACAT/ATGT	-	30	11	7	2	1	1	1																																																																																																																																																						53
ACCG/CGGT	-	1																																																																																																																																																												1
ACCT/AGGT	-	2	2				1																																																																																																																																																							5
ACGC/CGTG	-						1																																																																																																																																																							1
ACTC/AGTG	-	8			1																																																																																																																																																									9
ACTG/AGTC	-	2																																																																																																																																																												2
AGAT/ATCT	-	7	2	1	1																																																																																																																																																									11
AGCC/CTGG	-	1																																																																																																																																																												1
AGCG/CGCT	-	1																																																																																																																																																												1
AGCT/AGCT	-	1																																																																																																																																																												1
AGGG/CCCT	-	2																																																																																																																																																												2
ATCC/ATGG	-	5	1																																																																																																																																																											6
ATGC/ATGC	-	1																																																																																																																																																												1
AAAAC/GTTTT	13	3	1																																																																																																																																																											17
AAAAG/CTTTT	207	57	14	4	1					2																																																																																																																																																				285
AAAAT/ATTTT	154	32	7	2		1							1					1									1																																																																																																																																			199
AAACC/GGTTT	5																																																																																																																																																													5
AAACG/CGTTT	2	1																																																																																																																																																												3
AAACT/AGTTT	5																																																																																																																																																													5
AAAGC/CTTTG	3	2																																																																																																																																																												5
AAAGG/CCTTT	25																																																																																																																																																													25
AAAGT/ACTTT	2																																																																																																																																																													2
AAATC/ATTTG	7		2																																																																																																																																																											9
AAATG/ATTTC	11	1	1																																																																																																																																																											13
AAATT/AATTT	54	1	1																																																																																																																																																											56
AACAC/GTGTT	4																																																																																																																																																													4
AACAT/ATGTT	2																																																																																																																																																													2
AACCC/GGGTT	10																																																																																																																																																													10
AACCG/CGGTT	3																																																																																																																																																													3
AACCT/AGGTT	3	1																																																																																																																																																												4
AACGC/CGTTG	2																																																																																																																																																													2
AACTC/AGTTG	2																																																																																																																																																													2
AACTG/AGTTC	1																																																																																																																																																													1
AAGAC/CTTGT	4	1																																																																																																																																																												5
AAGAG/CTCTT	16	1	1																																																																																																																																																											18
AAGAT/ATCTT	1																																																																																																																																																													1
AAGCC/CTTGG	1																																																																																																																																																													1
AAGCT/AGCTT	1																																																																																																																																																													1
AAGGG/CCCTT	10	1																																																																																																																																																												11
AAGTC/ACTTG	4																																																																																																																																																													4
AAGTG/ACTTC	1																																																																																																																																																													1
AATAC/ATTGT	4																																																																																																																																																													4
AATAG/ATTCT	2	1																																																																																																																																																												3
AATAT/ATATT	32																																																																																																																																																													32
AATCC/ATTGG	7																																																																																																																																																													7
AATCT/AGATT	2																																																																																																																																																													2
AATGC/ATTGC	4	2																																																																																																																																																												6
AATGG/ATTCC	2	1																																																																																																																																																												3
AATGT/ACATT	2																																																																																																																																																													2
AATTC/AATTG	5	1																																																																																																																																																												6
ACACC/GGTGT	1																																																																																																																																																													1
ACACG/CGTGT	2																																																																																																																																																													2
ACACT/AGTGT	1	1																																																																																																																																																												2
ACAGC/CTGTG	1																																																																																																																																																													1
ACAGG/CCTGT	3																																																																																																																																																													3
ACAGT/ACTGT	10																																																																																																																																																													10
ACATC/ATGTG	4																																																																																																																																																													4
ACATG/ATGTC	4	1																																																																																																																																																												5
ACCAG/CTGGT	1	1																																																																																																																																																												2
ACCAT/ATGGT	7																																																																																																																																																													7
ACCCC/GGGGT	2																																																																																																																																																													2
ACCCG/CGGGT	1																																																																																																																																																													1
ACCCT/AGGGT	1	1																																																																																																																																																												2
ACCGG/CCGGT	1																																																																																																																																																													1
ACCGT/ACGGT	3																																																																																																																																																													3
ACCTC/AGGTG	1																																																																																																																																																													1
ACCTG/AGGTC	2																																																																																																																																																													2
ACGAG/CGTCT	3	1																																																																																																																																																												4
ACGAT/ATCGT	1																																																																																																																																																													1
ACGCC/CGTGG	1																																																																																																																																																													1
ACGGC/CCGTG	1																																																																																																																																																													1
ACGGG/CCCGT	2		1																																																																																																																																																											3
ACTAG/AGTCT	3	1																																																																																																																																																												4
ACTAT/AGTAT	2																																																																																																																																																													2
ACTCC/AGTGG	1																																																																																																																																																													1
ACTCG/AGTCG		1																																																																																																																																																												1
ACTCT/AGAGT	1																																																																																																																																																													1
ACTGG/AGTCC		1																																																																																																																																																												1
AGAGG/CCTCT	7																																																																																																																																																													7
AGATC/ATCTG		2																																																																																																																																																												2
AGATG/ATCTC	9	3	1																																																																																																																																																											13
AGCAT/ATGCT	2																																																																																																																																																													2
AGCCC/CTGGG	2																																																																																																																																																													2
AGCCG/CGGCT	2																																																																																																																																																													2
AGCGG/CCGCT	1																																																																																																																																																													1
AGCTC/AGCTG	6																																																																																																																																																													6
AGGAT/ATCCT	5																																																																																																																																																													5
AGGCG/CCTCG	2	1																																																																																																																																																												3
AGGGC/CCCTG	1																																																																																																																																																													1
AGGGG/CCCCT	8	1																																																																																																																																																												9
ATATC/ATATG	7																																																																																																																																																													7
ATCCC/ATGGG	5	1																																																																																																																																																												6
ATCGC/ATGCG	1																																																																																																																																																													1
AAAAAC/GTTTTT	4	1																																																																																																																																																												5
AAAAAG/CTTTTT	80	13	3	2	1																																																																																																																																																									99
AAAAAT/ATTTTT	76	9	6																																																																																																																																																											91
AAAACC/GGTTTT	2																																																																																																																																																													2
AAAAGC/CTTTTG	3																																																																																																																																																													3
AAAAGG/CCTTTT	8	1																																																																																																																																																												9
AAAAGT/ACTTTT	2																																																																																																																																																													2
AAAATC/ATTTTG	1		1																																																																																																																																																											2
AAAATG/ATTTTC	8																																																																																																																																																													8
AAAATT/AATTTT	8																																																																																																																																																													8
AAACAC/GTGTTT	1																																																																																																																																																													1
AAACAG/CTGTTT		1																																																																																																																																																												1
AAACCC/GGGTTT	6																																																																																																																																																													6
AAACGG/CCGTTT	1																																																																																																																																																													1
AAAGAC/CTTTGT	1																																																																																																																																																													1
AAAGAG/CTCTTT	7	1	1																																																																																																																																																											9
AAAGAT/ATCTTT	2																																																																																																																																																													2
AAAGGG/CCCTTT	3																																																																																																																																																													3
AAAGGT/ACCTTT	1																																																																																																																																																													1
AAAGTC/ACTTTG	1																																																																																																																																																													1
AAAGTG/ACTTTC	1																																																																																																																																																													1
AAATAG/ATTTCT	3																																																																																																																																																													3
AAATAT/ATATTT	3																																																																																																																																																													3
AAATCC/ATTTGG	1																																																																																																																																																													1
AAATCT/AGATTT	2																																																																																																																																																													2
AAATGG/ATTTCC	1	1																																																																																																																																																												2
AAATGT/ACATTT		1																																																																																																																																																												1
AAATTG/AATTTC	1																																																																																																																																																													1
AAATTT/AAATTT	2	1																																																																																																																																																												3
AACAAG/CTTGTT	4	1																																																																																																																																																												5
AACAAT/ATTGTT	1																																																																																																																																																													1
AACACC/GGTGTT	2	1																																																																																																																																																												3
AACAGC/CTGTTG	3	2	1																																																																																																																																																											6
AACAGG/CCTGTT	3																																																																																																																																																													3
AACATC/ATGTTG	3																																																																																																																																																													3
AACATG/ATGTTC	1																																																																																																																																																													1
AACCAC/GGTTGT	4																																																																																																																																																													4
AACCAT/ATGGTT	1																																																																																																																																																													1
AACCCC/GGGGTT	4	1																																																																																																																																																												5
AACCCG/CGGGTT	2																																																																																																																																																													2
AACCGC/CGGTTG	1																																																																																																																																																													1
AACCTC/AGGTTG	1																																																																																																																																																													1
AACCTG/AGGTTC	1																																																																																																																																																													1
AACGAC/CGTTGT	3																																																																																																																																																													3
AACGCC/CGTTGG			1																																																																																																																																																											1
AACGTC/ACGTTG	1																																																																																																																																																													1
AACTAC/AGTTGT	2																																																																																																																																																													2
AACTAT/AGTTAT	1																																																																																																																																																													1
AACTGC/AGTTGC	1																																																																																																																																																													1
AACTTC/AAGTTG	1																																																																																																																																																													1
AAGAAT/ATTCTT	1																																																																																																																																																													1
AAGACC/CTTGGT	1																																																																																																																																																													1
AAGACG/CGTCTT	4																																																																																																																																																													4
AAGAGG/CCTCTT	10	2																																																																																																																																																												12
AAGATG/ATCTTC	1	1																																																																																																																																																												2
AAGCAG/CTGCTT	3																																																																																																																																																													3
AAGCCG/CGGCTT	1		1																																																																																																																																																											2
AAGCGG/CCGCTT	1																																																																																																																																																													1
AAGGAC/CCTTGT	1																																																																																																																																																													1
AAGGAG/CCTTCT	1																																																																																																																																																													1
AAGGGC/CCCTTG	2																																																																																																																																																													2
AAGTAG/ACTTCT	1	1																																																																																																																																																												2
AAGTCC/ACTTGG	2																																																																																																																																																													2
AAGTGG/ACTTCC	1																																																																																																																																																													1
AATACC/ATTGGT	1																																																																																																																																																													1
AATAGT/ACTATT	2																																																																																																																																																													2
AATATT/AATATT	16																																																																																																																																																													16
AATCAC/ATTGTG	2																																																																																																																																																													2
AATCAT/ATGATT	4																																																																																																																																																													4
AATCCC/ATTGGG		2																																																																																																																																																												2
AATCGC/ATTGCG	1																																																																																																																																																													1
AATGAG/ATTCTC	3																																																																																																																																																													3
AATGCC/ATTGGC	2																																																																																																																																																													2
AATGGC/ATTGCC	2																																																																																																																																																													2
AATGGG/ATTCCC	1																																																																																																																																																													1
AATGGT/ACCATT	1																																																																																																																																																													1
AATGTC/ACATTG	1																																																																																																																																																													1
AATGTG/ACATTC	2																																																																																																																																																													2
AATTAC/AATTGT	1																																																																																																																																																													1
AATTAG/AATTCT	1																																																																																																																																																													1
AATTAT/AATTAT	8	1																																																																																																																																																												9
AATTCC/AATTGG	1																																																																																																																																																													1
ACACAG/CTGTGT	1																																																																																																																																																													1
ACACAT/ATGTGT	2																																																																																																																																																													2
ACACCC/GGGTGT		1																																																																																																																																																												1
ACACGC/CGTGTG	1																																																																																																																																																													1
ACAGAG/CTCTGT	1																																																																																																																																																													1
ACAGCG/CGCTGT	1																																																																																																																																																													1
ACAGGG/CCCTGT	2																																																																																																																																																													2
ACAGTC/ACTGTG	1																																																																																																																																																													1
ACATAG/ATGTCT	1																																																																																																																																																													1
ACATAT/ATATGT	3																																																																																																																																																													3
ACATCC/ATGTGG	1																																																																																																																																																													1
ACATGC/ATGTGC	1																																																																																																																																																													1
ACATGG/ATGTCC	2																																																																																																																																																													2
ACATGT/ACATGT	1	1																																																																																																																																																												2
ACCACG/CGTGGT	1																																																																																																																																																													1
ACCACT/AGTGGT	1	1						2																																																																																																																																																						4
ACCAGC/CTGGTG	2																																																																																																																																																													2
ACCATC/ATGGTG	4																																																																																																																																																													4
ACCATG/ATGGTC	1																																																																																																																																																													1
ACCCCC/GGGGGT	1																																																																																																																																																													1
ACCCTC/AGGGTG		1																																																																																																																																																												1
ACCCTG/AGGGTC	1																																																																																																																																																													1
ACCGAG/CGGTCT	1																																																																																																																																																													1
ACCGCC/CGGTGG	2																																																																																																																																																													2
ACCGGC/CCGGTG		1																																																																																																																																																												1
ACCGGG/CCCGGT		1																																																																																																																																																												1
ACCGTC/ACGGTG	1																																																																																																																																																													1
ACCTAT/AGGTAT	1																																																																																																																																																													1
ACCTCC/AGGTGG	1	1																																																																																																																																																												2
ACCTCG/AGGTCG	1																																																																																																																																																													1
ACCTGC/AGGTGC	1																																																																																																																																																													1
ACGACT/AGTCGT	1																																																																																																																																																													1
ACGAGC/CGTGCT	1																																																																																																																																																													1
ACGAGG/CCTCGT	5																																																																																																																																																													5
ACGATC/ATCGTG	2																																																																																																																																																													2
ACGATG/ATCGTC	10																																																																																																																																																													10
ACGCAG/CGTCTG	1																																																																																																																																																													1
ACGCGG/CCGCGT	1																																																																																																																																																													1
ACGCTC/AGCGTG	1																																																																																																																																																													1
ACGCTG/AGCGTC	2																																																																																																																																																													2
ACGGAG/CCGTCT	1																																																																																																																																																													1
ACGGCC/CCGTGG	3																																																																																																																																																													3
ACGTAG/ACGTCT		1																																																																																																																																																												1
ACTATG/AGTCAT	1																																																																																																																																																													1
ACTCAG/AGTCTG	1																																																																																																																																																													1
ACTCAT/AGTATG	1																																																																																																																																																													1
ACTCCC/AGTGGG	1																																																																																																																																																													1
ACTCCG/AGTCGG	1																																																																																																																																																													1
ACTCGC/AGTGCG	1																																																																																																																																																													1
ACTCTC/AGAGTG	1																																																																																																																																																													1
ACTGAT/AGTATC	1																																																																																																																																																													1
ACTGCC/AGTGGC	2	1																																																																																																																																																												3
ACTGCG/AGTCGC	2																																																																																																																																																													2
ACTGCT/AGCAGT	3																																																																																																																																																													3
ACTGGC/AGTGCC	1																																																																																																																																																													1
AGAGCC/CTCTGG	4																																																																																																																																																													4
AGAGCG/CGCTCT	2																																																																																																																																																													2
AGAGCT/AGCTCT	1		1																																																																																																																																																											2
AGAGGC/CCTCTG	1																																																																																																																																																													1
AGAGGG/CCCTCT	5	1	1																																																																																																																																																											7
AGATCG/ATCTCG	2																																																																																																																																																													2
AGATGC/ATCTGC	1																																																																																																																																																													1
AGCAGG/CCTGCT	2	1																																																																																																																																																												3
AGCATC/ATGCTG	3																																																																																																																																																													3
AGCCAT/ATGGCT	1																																																																																																																																																													1
AGCCCC/CTGGGG	1	1																																																																																																																																																												2
AGCCCG/CGGGCT	1	1																																																																																																																																																												2
AGCCGC/CGGCTG	6	2																																																																																																																																																												8
AGCCGG/CCGGCT	4																																																																																																																																																													4
AGCCTC/AGGCTG	1																																																																																																																																																													1
AGCCTG/AGGCTC	3																																																																																																																																																													3
AGCGAT/ATCGCT		1																																																																																																																																																												1
AGCGCG/CGCGCT	1																																																																																																																																																													1
AGCGGC/CCGCTG		2																																																																																																																																																												2
AGCGGG/CCCGCT	1																																																																																																																																																													1
AGCTCC/AGCTGG	4																																																																																																																																																													4
AGCTGC/AGCTGC	1																																																																																																																																																													1
AGGATC/ATCCTG	1																																																																																																																																																													1
AGGATG/ATCCTC	8	1	1																																																																																																																																																											10
AGGCGC/CCTGCG	1	1																																																																																																																																																												2
AGGCGG/CCGCCT	3																																																																																																																																																													3
AGGGAT/ATCCCT	1																																																																																																																																																													1
AGGGGG/CCCCCT	2																																																																																																																																																													2
ATATCC/ATATGG	1																																																																																																																																																													1
ATATCG/ATATCG	1																																																																																																																																																													1
ATATGC/ATATGC	1																																																																																																																																																													1
ATCCCC/ATGGGG	1																																																																																																																																																													1
ATCCCG/ATCGGG	2																																																																																																																																																													2
ATCGCC/ATGGCG	2																																																																																																																																																													2
ATCGGC/ATGCCG	2																																																																																																																																																													2
CCCGCG/CGCGGG	1																																																																																																																																																													1
