Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-3/megassr/results/hub_GCA_013145875.1/fasta/hub_GCA_013145875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              232
Total size of examined sequences (bp):           39145403
Total number of identified SSRs:                 3290
Number of SSR containing sequences:              136
Number of sequences containing more than 1 SSR:  115
Number of SSRs present in compound formation:    280


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	236
2	696
3	549
4	366
5	844
6	599

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	16	12	14	9	12	6	5	4	5	3	4	1	2	1	2	2					1	1					2	1	1				1								1	1																		1																	1																																									109
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1		1	2																																																																																																																7
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1		2																																																																																																															3
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	16	20	12	10	4	8	4	6	5	4	3		1	2		2	2	1	1				2			1	1	1				1		1	1						1	1				1		1	1			1															1																																																		1	117
AC	-	-	-	9	2	3	3	1	3	2			2	1													1																																																																																																												27
AG	-	-	-	25	12	11	12	6	2	1	5	2				1		1	1																																																																																																																				79
AT	-	-	-	84	34	12	16	3	9	2	4	4	1																																																																																																																										169
CA	-	-	-	7	6	1	1	2	4	1			1	1			1				1																																																																																																																		26
CG	-	-	-	2																																																																																																																																			2
CT	-	-	-	19	12	2	5		1	2	1	1		1	1	1	1	1									1																																																																																																												49
GA	-	-	-	18	11	1	4	4	2			1			1	1																																																																																																																							43
GC	-	-	-	2																																																																																																																																			2
GT	-	-	-	4	3	4	2	1	1	1	1	2	2		1				1						1	1				1																																																																																																									26
TA	-	-	-	97	26	24	8	14	9	1	1	2	1																																																																																																																										183
TC	-	-	-	26	15	8	6	2	2	1		5	1	1																																																																																																																									67
TG	-	-	-	9	2	2	1	2	3	2											1		1																																																																																																																23
AAC	-	-	3	2			1																																																																																																																																6
AAG	-	-	11	1	2	2				1	1				1																																																																																																																								19
AAT	-	-	13	3	1	3	2		1																						1																																																																																																								24
ACA	-	-	7	2	1		1																																																																																																																																11
ACC	-	-	5	2																																																																																																																																			7
ACG	-	-	2																																																																																																																																				2
ACT	-	-	7	1	1		1				1		1			2												1																																																																																																											15
AGA	-	-	7	2	1	4	1	3						1													1																																																																																																												20
AGC	-	-	6	2	2																																																																																																																																		10
AGG	-	-		2						1																																																																																																																													3
AGT	-	-	5		1							1																																																																																																																											7
ATA	-	-	7	1	1				1																																																																																																																														10
ATC	-	-	3	1		1	1																																																																																																																																6
ATG	-	-	3			1				1																																																																																																																													5
ATT	-	-	6	7	4	3		1	1	1																						1																																																																																																							24
CAA	-	-	4	4	1		2																																																																																																																																11
CAC	-	-	2	2	2																																																																																																																																		6
CAG	-	-	4	3			1	1																																																																																																																															9
CAT	-	-	6	2	2		2	1																																																																																																																															13
CCA	-	-	7	2																																																																																																																																			9
CCG	-	-	3	2																																																																																																																																			5
CCT	-	-	5		1	1	2																																																																																																																																9
CGA	-	-	2	1		1																																																																																																																																	4
CGC	-	-	2	1																																																																																																																																			3
CTA	-	-	1		1																										1																																																																																																								3
CTC	-	-	5	1	1			1																																																																																																																															8
CTG	-	-	5	3	1	1	1	1																																																																																																																															12
CTT	-	-	11	5		2	1		1																																																																																																																														20
GAA	-	-	9	3	3	2		1									1																																																																																																																						19
GAC	-	-	2																																																																																																																																				2
GAG	-	-	2	1			1																																																																																																																																4
GAT	-	-	8	2			1																																																																																																																																11
GCA	-	-	2	2	1																																																																																																																																		5
GCC	-	-	4	2	1	1																																																																																																																																	8
GCG	-	-	1																																																																																																																																				1
GCT	-	-	1	1	1																																																																																																																																		3
GGA	-	-	2																																																																																																																																				2
GGC	-	-	5	3																																																																																																																																			8
GGT	-	-	5	1	1																																																																																																																																		7
GTA	-	-	3		1		1						1				1													1			1																																																																																																						9
GTC	-	-	5																																																																																																																																				5
GTG	-	-	1	1							1																																																																																																																												3
GTT	-	-	6																		1																																																																																																																		7
TAA	-	-	2	3	3	1	1																																																																																																																																10
TAC	-	-	4		1						1							1											1																																																																																																										8
TAG	-	-	1	1	2	1																																																																																																																																	5
TAT	-	-	13	3	2	1	1		2																																																																																																																														22
TCA	-	-	4	3	2																																																																																																																																		9
TCC	-	-	3	2	1		1	1	1	1			1																																																																																																																										11
TCG	-	-	4	1	1																																																																																																																																		6
TCT	-	-	10	3	3																								1																																																																																																										17
TGA	-	-	5		1	2			1		1																																																																																																																												10
TGC	-	-	7	3	1	3	1			1																																																																																																																													16
TGG	-	-	1	1	1																																																																																																																																		3
TGT	-	-	3	3	1	2									1																																																																																																																								10
TTA	-	-	13	8	2	2			1																																																																																																																														26
TTC	-	-	4	3	2	2	1		1									1									2																																																																																																												16
TTG	-	-	2		2							1																																																																																																																											5
AAAC	-	1			1																																																																																																																																		2
AAAG	-	16	4	4	1		1																																																																																																																																26
AAAT	-	19	3	2		1																																																																																																																																	25
AACA	-	1																																																																																																																																					1
AAGA	-	5	1	1																																																																																																																																			7
AAGC	-	2																																																																																																																																					2
AATA	-	5		1																																																																																																																																			6
AATC	-	1																																																																																																																																					1
AATG	-	1	1																																																																																																																																				2
AATT	-	4	1																																																																																																																																				5
ACAA	-		1																																																																																																																																				1
ACAG	-	1																																																																																																																																					1
ACAT	-	5	1							1																																																																																																																													7
ACCA	-	1																																																																																																																																					1
ACCG	-	1																																																																																																																																					1
ACGG	-	1																																																																																																																																					1
ACTA	-	1																																																																																																																																					1
AGAA	-	2	1	1																																																																																																																																			4
AGAC	-	1																																																																																																																																					1
AGAT	-	2																																																																																																																																					2
AGTC	-	1																																																																																																																																					1
ATAA	-	4	1	1																																																																																																																																			6
ATAC	-	3		1																																																																																																																																			4
ATAG	-	2	1	2																																																																																																																																			5
ATCA	-	5																																																																																																																																					5
ATCC	-	1																																																																																																																																					1
ATGA	-		1																																																																																																																																				1
ATGT	-	5	1	1																																																																																																																																			7
ATTC	-	2	2																																																																																																																																				4
ATTG	-	1																																																																																																																																					1
ATTT	-	5	2																																																																																																																																				7
CAAA	-	1																																																																																																																																					1
CAAG	-	1																																																																																																																																					1
CAAT	-	2		1			1																																																																																																																																4
CACT	-		1																																																																																																																																				1
CAGG	-	1																																																																																																																																					1
CAGT	-	1																																																																																																																																					1
CATA	-	3		1				1																																																																																																																															5
CATC	-	1																																																																																																																																					1
CATT	-	2			1																																																																																																																																		3
CCAT	-		1																																																																																																																																				1
CCCT	-	1																																																																																																																																					1
CGGA	-		1																																																																																																																																				1
CTAC	-	1			1																																																																																																																																		2
CTAT	-	1																																																																																																																																					1
CTCA	-	1	1																																																																																																																																				2
CTCC	-			1																																																																																																																																			1
CTCG	-	1	1																																																																																																																																				2
CTGT	-		1																																																																																																																																				1
CTTC	-	1	1																																																																																																																																				2
CTTT	-	6	3	3				1																																																																																																																															13
GAAA	-	4	1	1	1																																																																																																																																		7
GAAG	-	1																																																																																																																																					1
GAAT	-	2																																																																																																																																					2
GAGT	-	1																																																																																																																																					1
GATT	-	2	2																																																																																																																																				4
GGAA	-	1																																																																																																																																					1
GGAG	-	2																																																																																																																																					2
GGCA	-	1																																																																																																																																					1
GGGA	-		1	1																																																																																																																																			2
GGTA	-	1																																																																																																																																					1
GTAG	-	1																																																																																																																																					1
GTAT	-	1	1	1	1			1																																																																																																																															5
GTCT	-	1	1																																																																																																																																				2
GTGA	-	1																																																																																																																																					1
TAAA	-	2																																																																																																																																					2
TAAT	-	1	1																																																																																																																																				2
TACA	-	10	1	1	1																																																																																																																																		13
TAGA	-	3	1																																																																																																																																				4
TATC	-	1																																																																																																																																					1
TATG	-	4	1																																																																																																																																				5
TATT	-	2																																																																																																																																					2
TCAA	-	3		1																																																																																																																																			4
TCAC	-	3			1																																																																																																																																		4
TCAT	-		3																																																																																																																																				3
TCCA	-	1																																																																																																																																					1
TCTA	-	3	1																																																																																																																																				4
TCTT	-	2	3	1		1																																																																																																																																	7
TGAA	-	1																																																																																																																																					1
TGAC	-	1																																																																																																																																					1
TGAG	-	2																																																																																																																																					2
TGAT	-	4			1																																																																																																																																		5
TGCA	-	1																																																																																																																																					1
TGGA	-		1																																																																																																																																				1
TGGT	-				1																																																																																																																																		1
TGTA	-	6	1	1	3	1																																																																																																																																	12
TGTC	-		1																																																																																																																																				1
TGTT	-	1																																																																																																																																					1
TTAT	-	4	1																																																																																																																																				5
TTCA	-	2																																																																																																																																					2
TTCC	-	1																																																																																																																																					1
TTCT	-	2	1			1																																																																																																																																	4
TTGA	-	3	2	3																																																																																																																																			8
TTGG	-	1																																																																																																																																					1
TTTA	-	13	4	1	1																																																																																																																																		19
TTTC	-	21	4	4		1	1				1																																																																																																																												32
TTTG	-		1																																																																																																																																				1
AAAAC	1																																																																																																																																						1
AAAAG	33	14	6	2																																																																																																																																			55
AAAAT	19	6	5																																																																																																																																				30
AAACA	2																																																																																																																																						2
AAACC	1																																																																																																																																						1
AAACG	1																																																																																																																																						1
AAAGA	16	5	1																																																																																																																																				22
AAAGC	2																																																																																																																																						2
AAAGG	3	1																																																																																																																																					4
AAATA	14	2																																																																																																																																					16
AAATG	3																																																																																																																																						3
AAATT	5																																																																																																																																						5
AACAA	1																																																																																																																																						1
AACAC	1																																																																																																																																						1
AACCA	1																																																																																																																																						1
AACTA	1																																																																																																																																						1
AAGAA	14	5																																																																																																																																					19
AAGAC	1																																																																																																																																						1
AAGCG	1																																																																																																																																						1
AAGGC	1																																																																																																																																						1
AAGGG	1	1																																																																																																																																					2
AATAA	11	2		1																																																																																																																																			14
AATAG	1																																																																																																																																						1
AATAT	4																																																																																																																																						4
AATCA	1																																																																																																																																						1
AATGA	1																																																																																																																																						1
AATTA	3	1																																																																																																																																					4
AATTC	3																																																																																																																																						3
AATTT	4																																																																																																																																						4
ACAAG	1																																																																																																																																						1
ACAGG		1																																																																																																																																					1
ACCAG	1																																																																																																																																						1
ACCCT	1																																																																																																																																						1
ACGAA			1																																																																																																																																				1
ACGAG	1																																																																																																																																						1
ACTAG	2																																																																																																																																						2
ACTGG	1																																																																																																																																						1
ACTTG	1																																																																																																																																						1
AGAAA	13	4																																																																																																																																					17
AGAAG	3	1																																																																																																																																					4
AGACA	1																																																																																																																																						1
AGAGA	3																																																																																																																																						3
AGATA	1																																																																																																																																						1
AGATG	1	1																																																																																																																																					2
AGCAA	1																																																																																																																																						1
AGCCC	1																																																																																																																																						1
AGCTA	1																																																																																																																																						1
AGCTG	1																																																																																																																																						1
AGGAG	1																																																																																																																																						1
AGGGT	1																																																																																																																																						1
AGGTA	1																																																																																																																																						1
AGGTG	1																																																																																																																																						1
AGGTT	2																																																																																																																																						2
AGTAC	3																																																																																																																																						3
AGTAT	2																																																																																																																																						2
AGTTT				1																																																																																																																																			1
ATAAA	16																																																																																																																																						16
ATAAT	2																																																																																																																																						2
ATACC	1																																																																																																																																						1
ATACT	4																																																																																																																																						4
ATAGA	2	1																																																																																																																																					3
ATAGG	1																																																																																																																																						1
ATATA	5																																																																																																																																						5
ATATT	8																																																																																																																																						8
ATCCA	1																																																																																																																																						1
ATCCC	1																																																																																																																																						1
ATCTA	2																																																																																																																																						2
ATCTC	1																																																																																																																																						1
ATCTT	1																																																																																																																																						1
ATGAA	1																																																																																																																																						1
ATGAT	1																																																																																																																																						1
ATGCA	1	1																																																																																																																																					2
ATGCT	1																																																																																																																																						1
ATGGG	2																																																																																																																																						2
ATGTC	1																																																																																																																																						1
ATGTT	1																																																																																																																																						1
ATTAA	3																																																																																																																																						3
ATTAC	1																																																																																																																																						1
ATTAT	2																																																																																																																																						2
ATTCA	2																																																																																																																																						2
ATTCT	1																																																																																																																																						1
ATTGA	2																																																																																																																																						2
ATTGG	1																																																																																																																																						1
ATTTA	2																																																																																																																																						2
ATTTC	2																																																																																																																																						2
ATTTG	3																																																																																																																																						3
ATTTT	18	2	2																																																																																																																																				22
CAAAT	1																																																																																																																																						1
CAATG	1																																																																																																																																						1
CAATT	1																																																																																																																																						1
CACTC	1																																																																																																																																						1
CACTG	1																																																																																																																																						1
CAGCC	1																																																																																																																																						1
CAGGT	2																																																																																																																																						2
CAGTA	1																																																																																																																																						1
CATAA	1																																																																																																																																						1
CATAC	1																																																																																																																																						1
CATAT	3																																																																																																																																						3
CATCG	1																																																																																																																																						1
CATCT	1																																																																																																																																						1
CATGT	1																																																																																																																																						1
CATTC	1																																																																																																																																						1
CATTT	3																																																																																																																																						3
CCAAA	1																																																																																																																																						1
CCAAC	2																																																																																																																																						2
CCACA	1																																																																																																																																						1
CCACG	2																																																																																																																																						2
CCATA	2																																																																																																																																						2
CCATG	1																																																																																																																																						1
CCATT	1																																																																																																																																						1
CCCAA	1																																																																																																																																						1
CCCAT	1																																																																																																																																						1
CCCCT	2																																																																																																																																						2
CCCGC	1																																																																																																																																						1
CCCTT	1																																																																																																																																						1
CCGCG	1																																																																																																																																						1
CCGTA	1																																																																																																																																						1
CCGTG	1																																																																																																																																						1
CCTCT	2																																																																																																																																						2
CCTTC	1																																																																																																																																						1
CGACA	1																																																																																																																																						1
CGACT	1																																																																																																																																						1
CGATA	1																																																																																																																																						1
CGCAT	1																																																																																																																																						1
CGCGA	1																																																																																																																																						1
CGGTA	1																																																																																																																																						1
CGTCC		1																																																																																																																																					1
CGTGT			1																																																																																																																																				1
CTAAA	1																																																																																																																																						1
CTACA	1																																																																																																																																						1
CTAGT		1																																																																																																																																					1
CTATA	1																																																																																																																																						1
CTCAG	1																																																																																																																																						1
CTCAT	1																																																																																																																																						1
CTCCC	1																																																																																																																																						1
CTCGA	1																																																																																																																																						1
CTCTT	3																																																																																																																																						3
CTGAA		1																																																																																																																																					1
CTGTA	1																																																																																																																																						1
CTGTC	1																																																																																																																																						1
CTTCC	2																																																																																																																																						2
CTTCT	1																																																																																																																																						1
CTTGT		1																																																																																																																																					1
CTTTG	2																																																																																																																																						2
CTTTT	22	5																																																																																																																																					27
GAAAA	12	1	1																																																																																																																																				14
GAAAC		1																																																																																																																																					1
GAAAG	5	1																																																																																																																																					6
GAAAT	1																																																																																																																																						1
GAAGG	1																																																																																																																																						1
GAATA	2																																																																																																																																						2
GACAG	1																																																																																																																																						1
GACTG	1																																																																																																																																						1
GAGAA	1																																																																																																																																						1
GAGAG	1																																																																																																																																						1
GAGAT	2																																																																																																																																						2
GAGGG	2																																																																																																																																						2
GATAA	1																																																																																																																																						1
GATAT	1																																																																																																																																						1
GATCT	1																																																																																																																																						1
GATGT	2																																																																																																																																						2
GATTG	1																																																																																																																																						1
GCAGT	1																																																																																																																																						1
GCCCC	1																																																																																																																																						1
GCTGA	1																																																																																																																																						1
GGAAA	1																																																																																																																																						1
GGAAT	1																																																																																																																																						1
GGAGC	1																																																																																																																																						1
GGAGG	1																																																																																																																																						1
GGATA	1																																																																																																																																						1
GGATG	1																																																																																																																																						1
GGATT	1																																																																																																																																						1
GGCTC	1																																																																																																																																						1
GGGAG	2																																																																																																																																						2
GGGAT	1																																																																																																																																						1
GGGGA	1																																																																																																																																						1
GGGTG	1																																																																																																																																						1
GGTCT	2																																																																																																																																						2
GGTGA	2																																																																																																																																						2
GGTTA	2		1																																																																																																																																				3
GGTTG	1																																																																																																																																						1
GGTTT	1																																																																																																																																						1
GTACA		2																																																																																																																																					2
GTACC	1																																																																																																																																						1
GTAGT	1																																																																																																																																						1
GTATA	1																																																																																																																																						1
GTATG	1																																																																																																																																						1
GTATT	1																																																																																																																																						1
GTCAT		1																																																																																																																																					1
GTCGA		1																																																																																																																																					1
GTCTA	1																																																																																																																																						1
GTCTG	1																																																																																																																																						1
GTGGG	1																																																																																																																																						1
GTGGT	1																																																																																																																																						1
GTTCG	1																																																																																																																																						1
GTTGG	2																																																																																																																																						2
TAAAA	6	5	1																																																																																																																																				12
TAAAT	7	1																																																																																																																																					8
TAACC	8																																																																																																																																						8
TAATA	3																																																																																																																																						3
TAATC	2																																																																																																																																						2
TAATT	3																																																																																																																																						3
TACAG	2																																																																																																																																						2
TACAT	1																																																																																																																																						1
TACCA		1																																																																																																																																					1
TACCC	1																																																																																																																																						1
TACGG	1																																																																																																																																						1
TACGT	1																																																																																																																																						1
TAGAT		1																																																																																																																																					1
TAGGT	1																																																																																																																																						1
TAGTA	1																																																																																																																																						1
TAGTC	1																																																																																																																																						1
TATAA	1																																																																																																																																						1
TATAC	2																																																																																																																																						2
TATAT	2																																																																																																																																						2
TATCA	1	1																																																																																																																																					2
TATGC	1																																																																																																																																						1
TATTA	2																																																																																																																																						2
TATTG	1																																																																																																																																						1
TATTT	11	2	1																																																																																																																																				14
TCAAA	1																																																																																																																																						1
TCCTA	1																																																																																																																																						1
TCCTC	1																																																																																																																																						1
TCCTG	1																																																																																																																																						1
TCGGC	1																																																																																																																																						1
TCGGT	1																																																																																																																																						1
TCTAC	1																																																																																																																																						1
TCTAT	1																																																																																																																																						1
TCTCT	3																																																																																																																																						3
TCTTC	3																																																																																																																																						3
TCTTT	6	3		1		1																																																																																																																																	11
TGAAA	2																																																																																																																																						2
TGAGA	1																																																																																																																																						1
TGAGC	1																																																																																																																																						1
TGAGG	1																																																																																																																																						1
TGATT	1																																																																																																																																						1
TGCCT	1																																																																																																																																						1
TGCTA	1																																																																																																																																						1
TGCTG	1																																																																																																																																						1
TGGAA	1																																																																																																																																						1
TGGCT	1																																																																																																																																						1
TGGGT	1																																																																																																																																						1
TGTAC	3	1																																																																																																																																					4
TGTCG	1																																																																																																																																						1
TGTCT	1																																																																																																																																						1
TGTGG		1																																																																																																																																					1
TGTTC	1																																																																																																																																						1
TGTTG		1																																																																																																																																					1
TGTTT	2	1																																																																																																																																					3
TTAAA	2																																																																																																																																						2
TTATA	1																																																																																																																																						1
TTATC	1																																																																																																																																						1
TTATT	18	2																																																																																																																																					20
TTCAA	1																																																																																																																																						1
TTCCA	1																																																																																																																																						1
TTCCC	2																																																																																																																																						2
TTCCT	3	2																																																																																																																																					5
TTCTC	1																																																																																																																																						1
TTCTT	15	3																																																																																																																																					18
TTGCA	1	1																																																																																																																																					2
TTGCT	1	1																																																																																																																																					2
TTGGA		1																																																																																																																																					1
TTGGT	1																																																																																																																																						1
TTGTT	3																																																																																																																																						3
TTTAA	2																																																																																																																																						2
TTTAC	1																																																																																																																																						1
TTTAG	2	1																																																																																																																																					3
TTTAT	12	5		1																																																																																																																																			18
TTTCC	2			1																																																																																																																																			3
TTTCT	18	4	1																																																																																																																																				23
TTTGA		1																																																																																																																																					1
TTTGG	2																																																																																																																																						2
TTTGT	1																																																																																																																																						1
TTTTA	19	3																																																																																																																																					22
TTTTC	40	10	1	1																																																																																																																																			52
TTTTG	3		1																																																																																																																																				4
AAAAAC	1																																																																																																																																						1
AAAAAG	15	3	1	1																																																																																																																																			20
AAAAAT	11	4	1			1																																																																																																																																	17
AAAACA	1																																																																																																																																						1
AAAAGA	10																																																																																																																																						10
AAAAGG	1	1																																																																																																																																					2
AAAATA	8	2	1	1																																																																																																																																			12
AAAATT				1																																																																																																																																			1
AAACAG		1																																																																																																																																					1
AAACTG	1																																																																																																																																						1
AAAGAA	5																																																																																																																																						5
AAAGAG	1																																																																																																																																						1
AAATAA	6		1																																																																																																																																				7
AAATTA	4																																																																																																																																						4
AACACC	1																																																																																																																																						1
AACCCC	2																																																																																																																																						2
AACGAA			1																																																																																																																																				1
AACGCC	1																																																																																																																																						1
AAGAAA	3																																																																																																																																						3
AAGCAA		1																																																																																																																																					1
AAGCTG	1																																																																																																																																						1
AAGGAA	1																																																																																																																																						1
AAGTAA	1																																																																																																																																						1
AAGTAG	1																																																																																																																																						1
AATAAA	2																																																																																																																																						2
AATAGG	1																																																																																																																																						1
AATATT	2	1																																																																																																																																					3
AATGAG	1																																																																																																																																						1
AATGTA		1																																																																																																																																					1
AATTAT	1																																																																																																																																						1
AATTTT	1																																																																																																																																						1
ACAAAA	1																																																																																																																																						1
ACAAGA	1	1																																																																																																																																					2
ACACAA					1																																																																																																																																		1
ACACGA	1																																																																																																																																						1
ACACGG	1																																																																																																																																						1
ACCATA	1																																																																																																																																						1
ACCGTG	1																																																																																																																																						1
ACGACC	2																																																																																																																																						2
ACGATG	1																																																																																																																																						1
ACGTCA	1																																																																																																																																						1
AGAAAA	1																																																																																																																																						1
AGAAAG	1																																																																																																																																						1
AGAAGG	1																																																																																																																																						1
AGAATG	1																																																																																																																																						1
AGACGG	1																																																																																																																																						1
AGAGTC	1																																																																																																																																						1
AGATCG	1																																																																																																																																						1
AGCACT	1																																																																																																																																						1
AGCCGC	1																																																																																																																																						1
AGCTCT	1																																																																																																																																						1
AGCTGC	1																																																																																																																																						1
AGGAAC	1																																																																																																																																						1
AGGAAT	1																																																																																																																																						1
AGGAGA		1																																																																																																																																					1
AGGAGC	1																																																																																																																																						1
AGGCGG	1																																																																																																																																						1
AGGGAA	1																																																																																																																																						1
AGGGAG	1																																																																																																																																						1
AGGGCA	1																																																																																																																																						1
AGTAGC		1																																																																																																																																					1
AGTATA	1																																																																																																																																						1
ATAAAA	3																																																																																																																																						3
ATAACT	1																																																																																																																																						1
ATAATC	1																																																																																																																																						1
ATAATG	1																																																																																																																																						1
ATAGAA	1																																																																																																																																						1
ATAGTA	1																																																																																																																																						1
ATATAG	1		1																																																																																																																																				2
ATATCT	1																																																																																																																																						1
ATATTA	1																																																																																																																																						1
ATCAAA	1																																																																																																																																						1
ATCATT	1																																																																																																																																						1
ATCGCC	1																																																																																																																																						1
ATGAAA	1																																																																																																																																						1
ATGCCA	1																																																																																																																																						1
ATGCTG	1																																																																																																																																						1
ATGGTA	1																																																																																																																																						1
ATGGTC	1																																																																																																																																						1
ATGTTG	1																																																																																																																																						1
ATTAAT	1																																																																																																																																						1
ATTCTC	1	1																																																																																																																																					2
ATTTAA	1	2																																																																																																																																					3
ATTTAG	1																																																																																																																																						1
ATTTTA	3																																																																																																																																						3
ATTTTT	3	1																																																																																																																																					4
CAAAAG	1																																																																																																																																						1
CAAAGG	1																																																																																																																																						1
CAAATT	1																																																																																																																																						1
CAACAG	2																																																																																																																																						2
CAACCA		1																																																																																																																																					1
CAAGAA	1																																																																																																																																						1
CACACC	1																																																																																																																																						1
CACAGC	1																																																																																																																																						1
CACATT	1																																																																																																																																						1
CACGGC	1																																																																																																																																						1
CACTAC	1																																																																																																																																						1
CACTTT	1																																																																																																																																						1
CAGAAA				1																																																																																																																																			1
CAGAAG				1																																																																																																																																			1
CAGATA		1																																																																																																																																					1
CAGCAA	1																																																																																																																																						1
CAGCCG	1																																																																																																																																						1
CAGCTC	2																																																																																																																																						2
CAGGCT		1																																																																																																																																					1
CAGGGG	1																																																																																																																																						1
CAGGTG	1																																																																																																																																						1
CAGTAA	1																																																																																																																																						1
CATACT	1																																																																																																																																						1
CATAGT	1																																																																																																																																						1
CATCCC	1																																																																																																																																						1
CATCCT	1																																																																																																																																						1
CATCTC	1																																																																																																																																						1
CATCTT	1																																																																																																																																						1
CATGAG		1																																																																																																																																					1
CATGCT	1																																																																																																																																						1
CATTTT	1																																																																																																																																						1
CCAATT		1																																																																																																																																					1
CCACCT			1																																																																																																																																				1
CCACGG	1																																																																																																																																						1
CCACTG	1																																																																																																																																						1
CCACTT	2																																																																																																																																						2
CCAGAG	1																																																																																																																																						1
CCAGCG	1																																																																																																																																						1
CCAGTC	2																																																																																																																																						2
CCAGTG	2																																																																																																																																						2
CCCCCT	2																																																																																																																																						2
CCGAAG	1																																																																																																																																						1
CCGATG	1																																																																																																																																						1
CCGCCA	1																																																																																																																																						1
CCGCCT	1																																																																																																																																						1
CCGCTG	1																																																																																																																																						1
CCGGCT	1																																																																																																																																						1
CCTCAA	1																																																																																																																																						1
CCTCCA	1																																																																																																																																						1
CCTCTT		1																																																																																																																																					1
CCTGCG	1																																																																																																																																						1
CCTGTG	1																																																																																																																																						1
CCTTTT	1																																																																																																																																						1
CGACAC	1																																																																																																																																						1
CGACTC	1																																																																																																																																						1
CGAGAC	1																																																																																																																																						1
CGATAG		1																																																																																																																																					1
CGATCA	1																																																																																																																																						1
CGATCC	1																																																																																																																																						1
CGCACA	1																																																																																																																																						1
CGCAGC	1	1																																																																																																																																					2
CGCCGA	2																																																																																																																																						2
CGGCTC	1																																																																																																																																						1
CGGCTG	1																																																																																																																																						1
CGGGTT	1																																																																																																																																						1
CGTGAT		1																																																																																																																																					1
CTCACC	1																																																																																																																																						1
CTCAGA		1																																																																																																																																					1
CTCTCC	1																																																																																																																																						1
CTCTGG	1																																																																																																																																						1
CTCTTT	1																																																																																																																																						1
CTGAAC	2																																																																																																																																						2
CTGATT	1																																																																																																																																						1
CTGCTC	1																																																																																																																																						1
CTGGAG	1																																																																																																																																						1
CTGGGT	1																																																																																																																																						1
CTGGTT	1																																																																																																																																						1
CTGTTG			1																																																																																																																																				1
CTTCTC	1																																																																																																																																						1
CTTTGG	1																																																																																																																																						1
CTTTTT	5	1																																																																																																																																					6
GAAAAA	3																																																																																																																																						3
GAAAAT	1																																																																																																																																						1
GAAAGA	1																																																																																																																																						1
GAAGAC	1																																																																																																																																						1
GAAGAG		1																																																																																																																																					1
GAATCC	1																																																																																																																																						1
GAATTA	1																																																																																																																																						1
GACAAG	1																																																																																																																																						1
GACCAC		1																																																																																																																																					1
GACGAT	2																																																																																																																																						2
GACTAG	1																																																																																																																																						1
GACTGC	1																																																																																																																																						1
GAGAAA	1	1																																																																																																																																					2
GAGAGT	1																																																																																																																																						1
GAGCCA	3																																																																																																																																						3
GAGCGC	1																																																																																																																																						1
GAGGAA	3																																																																																																																																						3
GAGGAT	4	2																																																																																																																																					6
GAGGGA	1																																																																																																																																						1
GAGGGC	1																																																																																																																																						1
GAGGGT	1																																																																																																																																						1
GAGTTG	1																																																																																																																																						1
GATAGG	1																																																																																																																																						1
GATCCC	1																																																																																																																																						1
GATCGA	1																																																																																																																																						1
GATCGC	1																																																																																																																																						1
GATGAA		1																																																																																																																																					1
GATGAC	1																																																																																																																																						1
GATGGT	1																																																																																																																																						1
GATGTT	1																																																																																																																																						1
GATTAT	1																																																																																																																																						1
GCAAAA	1																																																																																																																																						1
GCAACA			1																																																																																																																																				1
GCACAT		1																																																																																																																																					1
GCAGGG	1																																																																																																																																						1
GCCACG	1																																																																																																																																						1
GCCATC	1																																																																																																																																						1
GCCGCT		1																																																																																																																																					1
GCCTCG	1																																																																																																																																						1
GCCTGG	1																																																																																																																																						1
GCGATT	1																																																																																																																																						1
GCGGCA		1																																																																																																																																					1
GCGGGG	1																																																																																																																																						1
GCTGGA	1																																																																																																																																						1
GCTGGC	1																																																																																																																																						1
GCTTCG	1																																																																																																																																						1
GCTTTG	1																																																																																																																																						1
GCTTTT	1																																																																																																																																						1
GGAAAA	1																																																																																																																																						1
GGACCT	1																																																																																																																																						1
GGACGC	1																																																																																																																																						1
GGAGAA	1																																																																																																																																						1
GGAGAG			1																																																																																																																																				1
GGAGCA	1																																																																																																																																						1
GGAGCT	1																																																																																																																																						1
GGAGGC	1																																																																																																																																						1
GGAGGG	1																																																																																																																																						1
GGATGA	1																																																																																																																																						1
GGATTC	1																																																																																																																																						1
GGCACC		1																																																																																																																																					1
GGCAGC	1																																																																																																																																						1
GGCGCC	1																																																																																																																																						1
GGCGGA	1																																																																																																																																						1
GGCGGT	1																																																																																																																																						1
GGCTCA						1																																																																																																																																	1
GGCTCC	1																																																																																																																																						1
GGCTCT	1																																																																																																																																						1
GGCTGC	1																																																																																																																																						1
GGCTGG		1																																																																																																																																					1
GGCTTT	1																																																																																																																																						1
GGGAAG	1																																																																																																																																						1
GGGGTA	1																																																																																																																																						1
GGGTTG		1																																																																																																																																					1
GGTACT	1																																																																																																																																						1
GGTCAC	1																																																																																																																																						1
GGTGGC	1																																																																																																																																						1
GTAAAA	1																																																																																																																																						1
GTAGTC	1																																																																																																																																						1
GTATGG		1																																																																																																																																					1
GTATGT	1																																																																																																																																						1
GTCAGA	1																																																																																																																																						1
GTCTTA	1																																																																																																																																						1
GTGCTC	1																																																																																																																																						1
GTGCTT	1																																																																																																																																						1
GTGGCA	1																																																																																																																																						1
GTGGGG	1																																																																																																																																						1
GTGTAG		1																																																																																																																																					1
GTGTTG	1																																																																																																																																						1
GTTATT	1																																																																																																																																						1
GTTCAC		1																																																																																																																																					1
GTTGCA	1																																																																																																																																						1
GTTGGT	1																																																																																																																																						1
GTTGTC	1																																																																																																																																						1
TAAAAA	3																																																																																																																																						3
TAAATC	2																																																																																																																																						2
TAACAC	1																																																																																																																																						1
TAATAT	2																																																																																																																																						2
TAATTA	1																																																																																																																																						1
TAGAAA	1																																																																																																																																						1
TAGATA		1																																																																																																																																					1
TATAAA	1																																																																																																																																						1
TATAAT	1																																																																																																																																						1
TATCTT		1																																																																																																																																					1
TATGCA	1																																																																																																																																						1
TATTAA	3																																																																																																																																						3
TATTTT	4	1																																																																																																																																					5
TCAACA	1																																																																																																																																						1
TCACAT	1																																																																																																																																						1
TCACGA	1																																																																																																																																						1
TCAGGC				1																																																																																																																																			1
TCAGGG	1																																																																																																																																						1
TCAGGT	1																																																																																																																																						1
TCATCG	1																																																																																																																																						1
TCATTT	1																																																																																																																																						1
TCCAGC	1				1																																																																																																																																		2
TCCCCT	1																																																																																																																																						1
TCCCTC	1																																																																																																																																						1
TCCTCG	1																																																																																																																																						1
TCCTCT	2																																																																																																																																						2
TCCTTC	2																																																																																																																																						2
TCCTTT	1																																																																																																																																						1
TCGGCA	1																																																																																																																																						1
TCGGCG		1																																																																																																																																					1
TCGGGT			1																																																																																																																																				1
TCGTCA	1																																																																																																																																						1
TCGTCC	2																																																																																																																																						2
TCGTTG	1																																																																																																																																						1
TCTCAC	1																																																																																																																																						1
TCTCCT			1																																																																																																																																				1
TCTCGC	2																																																																																																																																						2
TCTGCT	1																																																																																																																																						1
TCTGGC	1			1																																																																																																																																			2
TCTGTC	1																																																																																																																																						1
TCTTCA		1																																																																																																																																					1
TCTTCC	2		1																																																																																																																																				3
TCTTCG	1																																																																																																																																						1
TCTTGT	1																																																																																																																																						1
TCTTTG	1																																																																																																																																						1
TCTTTT	3	1																																																																																																																																					4
TGAATG	1																																																																																																																																						1
TGACAG	1																																																																																																																																						1
TGACAT	1																																																																																																																																						1
TGACCA	1																																																																																																																																						1
TGACCC	1																																																																																																																																						1
TGACGA	1	1																																																																																																																																					2
TGAGAG	1																																																																																																																																						1
TGAGCG	1																																																																																																																																						1
TGAGGA	1																																																																																																																																						1
TGATTC		1																																																																																																																																					1
TGCAGA	1																																																																																																																																						1
TGCATA	1																																																																																																																																						1
TGCCAC	1																																																																																																																																						1
TGCGGC	1																																																																																																																																						1
TGCGTC	1																																																																																																																																						1
TGCTGT	1																																																																																																																																						1
TGCTTG	1																																																																																																																																						1
TGGCAT	1																																																																																																																																						1
TGGCGT	1																																																																																																																																						1
TGGGGA	1																																																																																																																																						1
TGGGTC	1																																																																																																																																						1
TGGGTT	1																																																																																																																																						1
TGGTAG	1																																																																																																																																						1
TGGTCT	1																																																																																																																																						1
TGGTGA	1																																																																																																																																						1
TGGTGT	1																																																																																																																																						1
TGGTTC	1																																																																																																																																						1
TGTACA	1																																																																																																																																						1
TGTGAC	1																																																																																																																																						1
TGTGTA		1																																																																																																																																					1
TGTGTT	1																																																																																																																																						1
TGTTGG	1																																																																																																																																						1
TGTTTG	1																																																																																																																																						1
TTAATT	1																																																																																																																																						1
TTAGAT		1																																																																																																																																					1
TTATTC	1																																																																																																																																						1
TTATTT	4																																																																																																																																						4
TTCAGA	1																																																																																																																																						1
TTCATC	1																																																																																																																																						1
TTCATG	1																																																																																																																																						1
TTCCTC	1																																																																																																																																						1
TTCCTG	1																																																																																																																																						1
TTCTTG		1																																																																																																																																					1
TTCTTT	3	1																																																																																																																																					4
TTGATA		1																																																																																																																																					1
TTGATT	2																																																																																																																																						2
TTGCTT	1																																																																																																																																						1
TTGGAA	1																																																																																																																																						1
TTGGAG	1																																																																																																																																						1
TTGGTG	1																																																																																																																																						1
TTGTAA	1																																																																																																																																						1
TTGTGT	1																																																																																																																																						1
TTTAAA	2																																																																																																																																						2
TTTAAT	2																																																																																																																																						2
TTTAGA	1																																																																																																																																						1
TTTATT	5	5																																																																																																																																					10
TTTCAT	1	1																																																																																																																																					2
TTTCCA	1																																																																																																																																						1
TTTCCG		1																																																																																																																																					1
TTTCTC	3																																																																																																																																						3
TTTCTT	5	1	2																																																																																																																																				8
TTTGCC	1																																																																																																																																						1
TTTGGG	1																																																																																																																																						1
TTTTAA	2																																																																																																																																						2
TTTTAT	7	2																																																																																																																																					9
TTTTCA	2					1																																																																																																																																	3
TTTTCT	8																																																																																																																																						8
TTTTGC	1																																																																																																																																						1
TTTTGT	4																																																																																																																																						4
TTTTTA	11	2	1																																																																																																																																				14
TTTTTC	19	4	1																																																																																																																																				24

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	32	32	26	19	16	14	9	10	10	7	7	1	3	3	2	4	2	1	1		1	1	2			1	3	2	1			1	1	1	1						2	2				1		1	1			1								1							1										1																																								1	226
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1		2	2	2																																																																																																															10
AC/GT	-	-	-	29	13	10	7	6	11	6	1	2	5	2	1		1		1		2		1		1	1	1			1																																																																																																									102
AG/CT	-	-	-	88	50	22	27	12	7	4	6	9	1	2	2	3	1	2	1								1																																																																																																												238
AT/AT	-	-	-	181	60	36	24	17	18	3	5	6	2																																																																																																																										352
CG/CG	-	-	-	4																																																																																																																																			4
AAC/GTT	-	-	25	11	5	2	4					1			1						1																																																																																																																		50
AAG/CTT	-	-	52	17	11	12	3	4	2	1	1			1	1		1	1									3		1																																																																																																										111
AAT/ATT	-	-	54	25	13	10	4	1	6	1																					1	1																																																																																																							116
ACC/GGT	-	-	21	9	4						1																																																																																																																												35
ACG/CGT	-	-	15	2	1	1																																																																																																																																	19
ACT/AGT	-	-	21	2	7	1	2				2	1	2			2	1	1										1	1	1	1		1																																																																																																						47
AGC/CTG	-	-	25	14	6	4	3	2		1																																																																																																																													55
AGG/CCT	-	-	17	6	3	1	4	2	1	2			1																																																																																																																										37
ATC/ATG	-	-	29	8	5	4	4	1	1	1	1																																																																																																																												54
CCG/CGG	-	-	15	8	1	1																																																																																																																																	25
AAAC/GTTT	-	4	2		1																																																																																																																																		7
AAAG/CTTT	-	58	18	15	2	3	2	1			1																																																																																																																												100
AAAT/ATTT	-	54	11	5	1	1																																																																																																																																	72
AACC/GGTT	-	2			1																																																																																																																																		3
AACT/AGTT	-	1																																																																																																																																					1
AAGC/CTTG	-	3																																																																																																																																					3
AAGG/CCTT	-	4	1																																																																																																																																				5
AATC/ATTG	-	21	4	5	1		1																																																																																																																																32
AATG/ATTC	-	10	7		1																																																																																																																																		18
AATT/AATT	-	5	2																																																																																																																																				7
ACAG/CTGT	-	3	3																																																																																																																																				6
ACAT/ATGT	-	37	6	6	5	1		2		1																																																																																																																													58
ACCG/CGGT	-	1																																																																																																																																					1
ACCT/AGGT	-	3			1																																																																																																																																		4
ACGG/CCGT	-	1	1																																																																																																																																				2
ACTC/AGTG	-	8	2		1																																																																																																																																		11
ACTG/AGTC	-	3																																																																																																																																					3
AGAT/ATCT	-	12	3	2																																																																																																																																			17
AGCG/CGCT	-	1	1																																																																																																																																				2
AGGC/CCTG	-	2																																																																																																																																					2
AGGG/CCCT	-	3	1	2																																																																																																																																			6
ATCC/ATGG	-	3	2																																																																																																																																				5
ATGC/ATGC	-	1																																																																																																																																					1
AAAAC/GTTTT	13	1	1																																																																																																																																				15
AAAAG/CTTTT	189	54	10	4		1																																																																																																																																	258
AAAAT/ATTTT	144	29	9	2																																																																																																																																			184
AAACC/GGTTT	7																																																																																																																																						7
AAACG/CGTTT	1	1	1																																																																																																																																				3
AAACT/AGTTT	4	1		1																																																																																																																																			6
AAAGC/CTTTG	6	1																																																																																																																																					7
AAAGG/CCTTT	14	4		1																																																																																																																																			19
AAAGT/ACTTT	1																																																																																																																																						1
AAATC/ATTTG	7	1																																																																																																																																					8
AAATG/ATTTC	13																																																																																																																																						13
AAATT/AATTT	31	2																																																																																																																																					33
AACAC/GTGTT	1	1																																																																																																																																					2
AACAG/CTGTT	1																																																																																																																																						1
AACAT/ATGTT	2																																																																																																																																						2
AACCC/GGGTT	7																																																																																																																																						7
AACCG/CGGTT	2																																																																																																																																						2
AACCT/AGGTT	13		1																																																																																																																																				14
AACGT/ACGTT	1																																																																																																																																						1
AACTG/AGTTC		1																																																																																																																																					1
AAGAC/CTTGT	4	1																																																																																																																																					5
AAGAG/CTCTT	18	1																																																																																																																																					19
AAGAT/ATCTT	4																																																																																																																																						4
AAGCC/CTTGG	1																																																																																																																																						1
AAGCG/CGCTT	1																																																																																																																																						1
AAGCT/AGCTT	1																																																																																																																																						1
AAGGC/CCTTG	2																																																																																																																																						2
AAGGG/CCCTT	8	1																																																																																																																																					9
AAGGT/ACCTT	1																																																																																																																																						1
AAGTC/ACTTG	1																																																																																																																																						1
AATAC/ATTGT	2																																																																																																																																						2
AATAG/ATTCT	7	1																																																																																																																																					8
AATAT/ATATT	30																																																																																																																																						30
AATCC/ATTGG	4	1																																																																																																																																					5
AATCT/AGATT	4	1																																																																																																																																					5
AATGC/ATTGC	3	2																																																																																																																																					5
AATGG/ATTCC	5																																																																																																																																						5
AATGT/ACATT	2																																																																																																																																						2
AATTC/AATTG	9																																																																																																																																						9
ACACC/GGTGT	2	1																																																																																																																																					3
ACACG/CGTGT	2		1																																																																																																																																				3
ACACT/AGTGT	2																																																																																																																																						2
ACAGC/CTGTG	1																																																																																																																																						1
ACAGG/CCTGT	3	1																																																																																																																																					4
ACAGT/ACTGT	10	3																																																																																																																																					13
ACATC/ATGTG	2																																																																																																																																						2
ACATG/ATGTC	2	1																																																																																																																																					3
ACCAG/CTGGT	4																																																																																																																																						4
ACCAT/ATGGT	5	1																																																																																																																																					6
ACCCC/GGGGT	2																																																																																																																																						2
ACCCT/AGGGT	3																																																																																																																																						3
ACCGT/ACGGT	4																																																																																																																																						4
ACCTC/AGGTG	4																																																																																																																																						4
ACCTG/AGGTC	2																																																																																																																																						2
ACGAG/CGTCT	1																																																																																																																																						1
ACGAT/ATCGT	1																																																																																																																																						1
ACGCC/CGTGG	2																																																																																																																																						2
ACGCG/CGCGT	1																																																																																																																																						1
ACGGC/CCGTG	1																																																																																																																																						1
ACGGG/CCCGT		1																																																																																																																																					1
ACTAG/AGTCT	4	1																																																																																																																																					5
ACTAT/AGTAT	11																																																																																																																																						11
ACTCC/AGTGG	1																																																																																																																																						1
ACTCG/AGTCG	2	1																																																																																																																																					3
ACTCT/AGAGT	1																																																																																																																																						1
ACTGC/AGTGC	2																																																																																																																																						2
ACTGG/AGTCC	2																																																																																																																																						2
AGAGG/CCTCT	5																																																																																																																																						5
AGATC/ATCTG	1																																																																																																																																						1
AGATG/ATCTC	7	1																																																																																																																																					8
AGCAT/ATGCT	3																																																																																																																																						3
AGCCC/CTGGG	2																																																																																																																																						2
AGCCG/CGGCT	2																																																																																																																																						2
AGCGG/CCGCT	1																																																																																																																																						1
AGCTC/AGCTG	4																																																																																																																																						4
AGGAT/ATCCT	3																																																																																																																																						3
AGGGG/CCCCT	9																																																																																																																																						9
ATATC/ATATG	6	1																																																																																																																																					7
ATCCC/ATGGG	6																																																																																																																																						6
ATCGC/ATGCG	2																																																																																																																																						2
ATGCC/ATGGC	1																																																																																																																																						1
CCCCG/CGGGG	2																																																																																																																																						2
CCGCG/CGCGG	1																																																																																																																																						1
AAAAAC/GTTTTT	7																																																																																																																																						7
AAAAAG/CTTTTT	80	11	4	1																																																																																																																																			96
AAAAAT/ATTTTT	67	17	4	1		1																																																																																																																																	90
AAAACG/CGTTTT			1																																																																																																																																				1
AAAAGC/CTTTTG	5	1																																																																																																																																					6
AAAAGG/CCTTTT	5	1																																																																																																																																					6
AAAAGT/ACTTTT	2																																																																																																																																						2
AAAATC/ATTTTG	3																																																																																																																																						3
AAAATG/ATTTTC	7	1				1																																																																																																																																	9
AAAATT/AATTTT	13			1																																																																																																																																			14
AAACAC/GTGTTT	3				1																																																																																																																																		4
AAACAG/CTGTTT		1		1																																																																																																																																			2
AAACCC/GGGTTT	2																																																																																																																																						2
AAACGG/CCGTTT		1																																																																																																																																					1
AAACTG/AGTTTC	1																																																																																																																																						1
AAAGAC/CTTTGT	1																																																																																																																																						1
AAAGAG/CTCTTT	8	1																																																																																																																																					9
AAAGAT/ATCTTT		1																																																																																																																																					1
AAAGCC/CTTTGG	3																																																																																																																																						3
AAAGGC/CCTTTG	2																																																																																																																																						2
AAAGGG/CCCTTT	1																																																																																																																																						1
AAAGTG/ACTTTC	1																																																																																																																																						1
AAATAG/ATTTCT	2																																																																																																																																						2
AAATAT/ATATTT	1																																																																																																																																						1
AAATCT/AGATTT	4	1																																																																																																																																					5
AAATGG/ATTTCC	1																																																																																																																																						1
AAATGT/ACATTT		1																																																																																																																																					1
AAATTC/AATTTG	1																																																																																																																																						1
AAATTT/AAATTT	3	2																																																																																																																																					5
AACAAG/CTTGTT	3	2																																																																																																																																					5
AACAAT/ATTGTT	1																																																																																																																																						1
AACACC/GGTGTT	6																																																																																																																																						6
AACACG/CGTGTT	1																																																																																																																																						1
AACACT/AGTGTT	1																																																																																																																																						1
AACAGC/CTGTTG	4		2																																																																																																																																				6
AACAGG/CCTGTT	2																																																																																																																																						2
AACAGT/ACTGTT	1																																																																																																																																						1
AACATC/ATGTTG	3																																																																																																																																						3
AACATG/ATGTTC	1																																																																																																																																						1
AACCAC/GGTTGT		1																																																																																																																																					1
AACCAG/CTGGTT	2																																																																																																																																						2
AACCAT/ATGGTT	1																																																																																																																																						1
AACCCC/GGGGTT	2	1																																																																																																																																					3
AACCCG/CGGGTT	1		1																																																																																																																																				2
AACCTC/AGGTTG	1																																																																																																																																						1
AACCTG/AGGTTC	3																																																																																																																																						3
AACGAC/CGTTGT	2																																																																																																																																						2
AACGCC/CGTTGG	2																																																																																																																																						2
AACGTC/ACGTTG	1																																																																																																																																						1
AACGTG/ACGTTC		1																																																																																																																																					1
AACTAT/AGTTAT	1																																																																																																																																						1
AACTCC/AGTTGG	2																																																																																																																																						2
AACTGC/AGTTGC	1																																																																																																																																						1
AAGAAT/ATTCTT	1																																																																																																																																						1
AAGACC/CTTGGT	1																																																																																																																																						1
AAGACG/CGTCTT	2																																																																																																																																						2
AAGACT/AGTCTT	1																																																																																																																																						1
AAGAGG/CCTCTT	8	2	1																																																																																																																																				11
AAGATG/ATCTTC	2	2																																																																																																																																					4
AAGCAC/CTTGTG	2																																																																																																																																						2
AAGCAG/CTGCTT	1			1																																																																																																																																			2
AAGCCG/CGGCTT	2																																																																																																																																						2
AAGCTG/AGCTTC	1																																																																																																																																						1
AAGGAC/CCTTGT	1																																																																																																																																						1
AAGGAG/CCTTCT	5	1	1																																																																																																																																				7
AAGGGC/CCCTTG	1																																																																																																																																						1
AAGGGG/CCCCTT	2																																																																																																																																						2
AAGTAG/ACTTCT	1																																																																																																																																						1
AAGTAT/ACTTAT	1																																																																																																																																						1
AAGTGG/ACTTCC	2																																																																																																																																						2
AATAGG/ATTCCT	2																																																																																																																																						2
AATAGT/ACTATT	1																																																																																																																																						1
AATATC/ATATTG		1																																																																																																																																					1
AATATT/AATATT	9	1																																																																																																																																					10
AATCAG/ATTCTG	1	1																																																																																																																																					2
AATCAT/ATGATT	2																																																																																																																																						2
AATCCG/ATTCGG	2																																																																																																																																						2
AATCGC/ATTGCG	1																																																																																																																																						1
AATCTG/AGATTC	1																																																																																																																																						1
AATGAG/ATTCTC	3	1																																																																																																																																					4
AATGAT/ATCATT	2																																																																																																																																						2
AATGCC/ATTGGC	2																																																																																																																																						2
AATGGT/ACCATT	1																																																																																																																																						1
AATGTC/ACATTG	1																																																																																																																																						1
AATGTG/ACATTC	3																																																																																																																																						3
AATTAC/AATTGT	1																																																																																																																																						1
AATTAG/AATTCT	1																																																																																																																																						1
AATTAT/AATTAT	3																																																																																																																																						3
AATTCC/AATTGG	1	1																																																																																																																																					2
ACACAT/ATGTGT	1	1																																																																																																																																					2
ACACCC/GGGTGT	1																																																																																																																																						1
ACACCG/CGGTGT	1																																																																																																																																						1
ACACCT/AGGTGT		1																																																																																																																																					1
ACACGC/CGTGTG	1																																																																																																																																						1
ACACGG/CCGTGT	1																																																																																																																																						1
ACAGAG/CTCTGT	1																																																																																																																																						1
ACAGAT/ATCTGT		1																																																																																																																																					1
ACAGCC/CTGTGG	1																																																																																																																																						1
ACAGGC/CCTGTG	1																																																																																																																																						1
ACAGTC/ACTGTG	1																																																																																																																																						1
ACAGTG/ACTGTC	1																																																																																																																																						1
ACATGC/ATGTGC		1																																																																																																																																					1
ACATGT/ACATGT	1																																																																																																																																						1
ACCACG/CGTGGT	2	1																																																																																																																																					3
ACCACT/AGTGGT	2																																																																																																																																						2
ACCAGT/ACTGGT	1																																																																																																																																						1
ACCATC/ATGGTG	2																																																																																																																																						2
ACCATG/ATGGTC	2																																																																																																																																						2
ACCCAG/CTGGGT	2																																																																																																																																						2
ACCCAT/ATGGGT		1																																																																																																																																					1
ACCCCC/GGGGGT	1																																																																																																																																						1
ACCCCT/AGGGGT	1																																																																																																																																						1
ACCCTC/AGGGTG	2																																																																																																																																						2
ACCCTG/AGGGTC	2																																																																																																																																						2
ACCGAG/CGGTCT	1																																																																																																																																						1
ACCGCC/CGGTGG	3																																																																																																																																						3
ACCGGC/CCGGTG		1																																																																																																																																					1
ACCGTG/ACGGTC	2																																																																																																																																						2
ACCTCC/AGGTGG	1		1																																																																																																																																				2
ACCTGC/AGGTGC	1																																																																																																																																						1
ACCTGG/AGGTCC	1																																																																																																																																						1
ACGACT/AGTCGT	1																																																																																																																																						1
ACGAGC/CGTGCT	1																																																																																																																																						1
ACGAGG/CCTCGT	3																																																																																																																																						3
ACGATC/ATCGTG	2	1																																																																																																																																					3
ACGATG/ATCGTC	7	1																																																																																																																																					8
ACGCAG/CGTCTG	1																																																																																																																																						1
ACGCCG/CGGCGT	2	1																																																																																																																																					3
ACGCGG/CCGCGT	1																																																																																																																																						1
ACGCTC/AGCGTG	1																																																																																																																																						1
ACGGAG/CCGTCT	1																																																																																																																																						1
ACGGCC/CCGTGG	3																																																																																																																																						3
ACTAGC/AGTGCT	1																																																																																																																																						1
ACTAGG/AGTCCT	1																																																																																																																																						1
ACTATG/AGTCAT	1																																																																																																																																						1
ACTCAG/AGTCTG		1																																																																																																																																					1
ACTCAT/AGTATG	1																																																																																																																																						1
ACTCCG/AGTCGG	1																																																																																																																																						1
ACTCTC/AGAGTG	3																																																																																																																																						3
ACTCTG/AGAGTC	2																																																																																																																																						2
ACTGCC/AGTGGC	3																																																																																																																																						3
ACTGCG/AGTCGC	1																																																																																																																																						1
ACTGCT/AGCAGT		1																																																																																																																																					1
ACTGGC/AGTGCC	2																																																																																																																																						2
ACTGGG/AGTCCC	2																																																																																																																																						2
AGAGCC/CTCTGG	7			1																																																																																																																																			8
AGAGCG/CGCTCT	2																																																																																																																																						2
AGAGCT/AGCTCT	1																																																																																																																																						1
AGAGGG/CCCTCT	4		1																																																																																																																																				5
AGATAT/ATATCT	2	1	1																																																																																																																																				4
AGATCG/ATCTCG	2																																																																																																																																						2
AGATGC/ATCTGC	1																																																																																																																																						1
AGATGG/ATCTCC	1																																																																																																																																						1
AGCAGG/CCTGCT	3																																																																																																																																						3
AGCATC/ATGCTG	1																																																																																																																																						1
AGCATG/ATGCTC	1	1																																																																																																																																					2
AGCCCC/CTGGGG		1																																																																																																																																					1
AGCCGC/CGGCTG	6	1																																																																																																																																					7
AGCCGG/CCGGCT	3																																																																																																																																						3
AGCCTG/AGGCTC		1		1		1																																																																																																																																	3
AGCGAT/ATCGCT		1																																																																																																																																					1
AGCGCC/CGCTGG	2																																																																																																																																						2
AGCGCG/CGCGCT	1																																																																																																																																						1
AGCGGC/CCGCTG	2	2																																																																																																																																					4
AGCTCC/AGCTGG	6				1																																																																																																																																		7
AGCTGC/AGCTGC	1																																																																																																																																						1
AGGATG/ATCCTC	7	2																																																																																																																																					9
AGGCCC/CCTGGG	1																																																																																																																																						1
AGGCCG/CCTCGG	1																																																																																																																																						1
AGGCGC/CCTGCG	1																																																																																																																																						1
AGGCGG/CCGCCT	4																																																																																																																																						4
AGGGAT/ATCCCT	1																																																																																																																																						1
AGGGCG/CCCTCG	1																																																																																																																																						1
AGGGGC/CCCCTG	2																																																																																																																																						2
AGGGGG/CCCCCT	3																																																																																																																																						3
ATATGC/ATATGC	2																																																																																																																																						2
ATCCCC/ATGGGG	2																																																																																																																																						2
ATCCCG/ATCGGG	2																																																																																																																																						2
ATCGCC/ATGGCG	2																																																																																																																																						2
ATCGCG/ATCGCG	1																																																																																																																																						1
ATCGGC/ATGCCG	2																																																																																																																																						2
CCCCCG/CGGGGG	1																																																																																																																																						1
CCGGCG/CCGGCG	1																																																																																																																																						1
