Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_013145845.1/fasta/hub_GCA_013145845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              142
Total size of examined sequences (bp):           38941926
Total number of identified SSRs:                 3294
Number of SSR containing sequences:              114
Number of sequences containing more than 1 SSR:  107
Number of SSRs present in compound formation:    270


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	242
2	730
3	539
4	369
5	836
6	578

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	25	18	13	12	6	4	3	3	5	7	2	1	1	3	1	2				2	2					2		1		1		1								1	1								1			1	1												1								1						1	1																																														1	125
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1						1																																																																																																																						3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1								1			1																																													1																											1																																										6
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	18	10	11	8	6	6	7	3	3	5	6			1		2	1	2		1	1	1	1		1				1	1					3	2							1								1									1				1				1		1							1																																																		108
AC	-	-	-	8	4	2	3	3	1	1	1			1								1																																																																																																																										25
AG	-	-	-	34	14	13	7	7		1		1	1		1			1																																																																																																																														80
AT	-	-	-	105	32	22	11	6	6	3	2	2	3																																																																																																																																			192
CA	-	-	-	8	1	4		3	3	1			2				1		1						1																																																																																																																							25
CG	-	-	-	1																																																																																																																																												1
CT	-	-	-	11	8	2	6		1	3		3	1				2	1			1	1			1		2																																																																																																																					43
GA	-	-	-	20	10	2	5	2	2			2						1				1									1																																																																																																																	46
GC	-	-	-	3																																																																																																																																												3
GT	-	-	-	7	8	3	3	1			2							1	1												1																																																																																																																	27
TA	-	-	-	98	37	9	13	15	9	5	2	2	1							1																																																																																																																												192
TC	-	-	-	24	17	6	3	3	7	1		2	1													1																																																																																																																						65
TG	-	-	-	14	5	3	1	2		1	1	2											1		1																																																																																																																							31
AAC	-	-	3		1																																																																																																																																											4
AAG	-	-	8	4	5	1	1						2										1																																																																																																																									22
AAT	-	-	16	10	1	1	2	3	1	1		1																																																																																																																																				36
ACA	-	-	4	5																																																																																																																																												9
ACC	-	-	6	1																																																																																																																																												7
ACT	-	-	4	1	1																																																																																																																																											6
AGA	-	-	7	5	1	2	1	3						1											1					1																																																																																																																		22
AGC	-	-	7	2	1				1																																																																																																																																							11
AGG	-	-	1	1	3		1																																																																																																																																									6
AGT	-	-	2	3	2	1			1		1				2																																																																																																																																	12
ATA	-	-	11	2		2	1		1													1																																																																																																																										18
ATC	-	-	6			1	1																																																																																																																																									8
ATG	-	-	4		1		1																																																																																																																																									6
ATT	-	-	5	5	2	1		1															1																																																																																																																									15
CAA	-	-	4	1			1																																																																																																																																									6
CAC	-	-	5		1																																																																																																																																											6
CAG	-	-	5	4	1	1	1																																																																																																																																									12
CAT	-	-	6			1			1																																																																																																																																							8
CCA	-	-	7	2																																																																																																																																												9
CCG	-	-	2																																																																																																																																													2
CCT	-	-	6		1					1																																																																																																																																						8
CGA	-	-	3																																																																																																																																													3
CGC	-	-	1	1																																																																																																																																												2
CGT	-	-	1																																																																																																																																													1
CTA	-	-	2		1			1		1			1																					1																																																																																																														7
CTC	-	-	4	2																																																																																																																																												6
CTG	-	-	4	1	1			2																																																																																																																																								8
CTT	-	-	16	3	5	2					1	1								1	1																																																																																																																											30
GAA	-	-	5	1	1	1		1	1							1																																																																																																																																11
GAC	-	-	5																																																																																																																																													5
GAG	-	-	2	2	2		1																																																																																																																																									7
GAT	-	-	10	3			1																																																																																																																																									14
GCA	-	-	4	1	2																																																																																																																																											7
GCC	-	-	4	3	1																																																																																																																																											8
GCG	-	-	2																																																																																																																																													2
GCT	-	-	3	2																																																																																																																																												5
GGA	-	-	2					1																																																																																																																																								3
GGC	-	-	7	2		1																																																																																																																																										10
GGT	-	-	1	1	1																																																																																																																																											3
GTA	-	-	1	1			2		1		1			1															1																																																																																																																			8
GTC	-	-	4																																																																																																																																													4
GTG	-	-		1			1																																																																																																																																									2
GTT	-	-	6	1	2		2	1		1																																																																																																																																						13
TAA	-	-	5	3	2	1																																																																																																																																										11
TAC	-	-	4	1		2								1				1																																																																																																																														9
TAG	-	-	1	1		1					1										1																																																																																																																											5
TAT	-	-	14	3	1		2	2				1																																																																																																																																				23
TCA	-	-	3	1	1	1										1																																																																																																																																7
TCC	-	-	3	1	3				1								1																																																																																																																															9
TCG	-	-	2					1																																																																																																																																								3
TCT	-	-	9	2	1	1																																																																																																																																										13
TGA	-	-	3	3		1						1										1																																																																																																																										9
TGC	-	-	5	2	1	2																																																																																																																																										10
TGG	-	-	2	2		1																																																																																																																																										5
TGT	-	-	2	2	1		1			1																																																																																																																																						7
TTA	-	-	12	1		1			1																																																																																																																																							15
TTC	-	-	3	4	3				1					1																																																																																																																																		12
TTG	-	-	5	3				1																																																																																																																																								9
AAAC	-		1																																																																																																																																													1
AAAG	-	13	6	4	1			1																																																																																																																																								25
AAAT	-	20	4																																																																																																																																													24
AACA	-	1																																																																																																																																														1
AAGA	-	6	1																																																																																																																																													7
AAGC	-	2																																																																																																																																														2
AAGG	-	1		1																																																																																																																																												2
AATA	-	2	1	1																																																																																																																																												4
AATC	-	4	2																																																																																																																																													6
AATG	-	1	2			1																																																																																																																																										4
AATT	-	4																																																																																																																																														4
ACAT	-	4	1																																																																																																																																													5
ACGG	-	1																																																																																																																																														1
AGAA	-	3	2	1																																																																																																																																												6
AGAC	-	1																																																																																																																																														1
AGTC	-	1																																																																																																																																														1
ATAA	-	3	1	1																																																																																																																																												5
ATAC	-	3		1																																																																																																																																												4
ATCA	-	4																																																																																																																																														4
ATGA	-		1																																																																																																																																													1
ATGT	-	4	1		1																																																																																																																																											6
ATTA	-	1																																																																																																																																														1
ATTC	-	3			1																																																																																																																																											4
ATTG	-	2																																																																																																																																														2
ATTT	-	9	1																																																																																																																																													10
CAAA	-	2																																																																																																																																														2
CAAG	-	1																																																																																																																																														1
CAAT	-	2		2			1																																																																																																																																									5
CACT	-	1																																																																																																																																														1
CATA	-	2	1			1		1																																																																																																																																								5
CATC	-	1																																																																																																																																														1
CATT	-	2		1																																																																																																																																												3
CCAA	-	2																																																																																																																																														2
CCAT	-	2	1																																																																																																																																													3
CCCT	-		1																																																																																																																																													1
CGAC	-	1																																																																																																																																														1
CGGA	-		1																																																																																																																																													1
CTAC	-	1			1																																																																																																																																											2
CTAT	-	1	1																																																																																																																																													2
CTCA	-	1	1																																																																																																																																													2
CTCC	-	1																																																																																																																																														1
CTGT	-	1																																																																																																																																														1
CTTT	-	7	1	1																																																																																																																																												9
GAAA	-	3	2	3																																																																																																																																												8
GAAG	-	1																																																																																																																																														1
GAAT	-	1	1																																																																																																																																													2
GAGC	-	1																																																																																																																																														1
GAGT	-	1																																																																																																																																														1
GATA	-	1																																																																																																																																														1
GATT	-	2																																																																																																																																														2
GCCT	-	1																																																																																																																																														1
GCTG	-	1																																																																																																																																														1
GGAA	-	2																																																																																																																																														2
GGAT	-	1																																																																																																																																														1
GGGA	-	1																																																																																																																																														1
GGTA	-	1																																																																																																																																														1
GTAT	-	3	2				1																																																																																																																																									6
GTCT	-	1																																																																																																																																														1
GTGA	-	2			1																																																																																																																																											3
GTTA	-	1																																																																																																																																														1
GTTG	-	1																																																																																																																																														1
GTTT	-		1																																																																																																																																													1
TAAA	-	3																																																																																																																																														3
TAAT	-	1	1																																																																																																																																													2
TACA	-	8	1	2	2																																																																																																																																											13
TACC	-	1																																																																																																																																														1
TAGA	-	1																																																																																																																																														1
TAGT	-	1																																																																																																																																														1
TATC	-	3		1																																																																																																																																												4
TATG	-	4	1																																																																																																																																													5
TATT	-	7	2																																																																																																																																													9
TCAA	-	2	1	2	1																																																																																																																																											6
TCAC	-	4																																																																																																																																														4
TCCA	-		1																																																																																																																																													1
TCGG	-	1																																																																																																																																														1
TCTA	-	5	2																																																																																																																																													7
TCTG	-	1																																																																																																																																														1
TCTT	-	5	2	2			1						1																																																																																																																																			11
TGAA	-	1	1																																																																																																																																													2
TGAC	-	1																																																																																																																																														1
TGAG	-	1																																																																																																																																														1
TGAT	-	1		1																																																																																																																																												2
TGCC	-	1																																																																																																																																														1
TGGT	-				1																																																																																																																																											1
TGTA	-	10	1	1	2	1																																																																																																																																										15
TGTC	-	1																																																																																																																																														1
TTAT	-	5	4																																																																																																																																													9
TTCA	-	3																																																																																																																																														3
TTCT	-	2		1																																																																																																																																												3
TTGA	-	3	2	2																																																																																																																																												7
TTGG	-	1																																																																																																																																														1
TTGT	-	1	2																																																																																																																																													3
TTTA	-	6	3	2		1																																																																																																																																										12
TTTC	-	14	9	1	1		1																																																																																																																																									26
TTTG	-		1																																																																																																																																													1
AAAAC	3																																																																																																																																															3
AAAAG	33	9	6	1																																																																																																																																												49
AAAAT	35	8	2																																																																																																																																													45
AAACA	2																																																																																																																																															2
AAACG	1																																																																																																																																															1
AAACT	1																																																																																																																																															1
AAAGA	14	4	2								1																																																																																																																																					21
AAAGG	3																																																																																																																																															3
AAATA	15	2																																																																																																																																														17
AAATG	4																																																																																																																																															4
AAATT	4																																																																																																																																															4
AACAA	1																																																																																																																																															1
AACAT	1																																																																																																																																															1
AACCA	1																																																																																																																																															1
AACTA	3																																																																																																																																															3
AACTC	1																																																																																																																																															1
AAGAA	12	2																																																																																																																																														14
AAGGA	1																																																																																																																																															1
AAGGC	1																																																																																																																																															1
AAGGG	1																																																																																																																																															1
AATAA	9	2																																																																																																																																														11
AATAG	1																																																																																																																																															1
AATAT	6																																																																																																																																															6
AATCC	1																																																																																																																																															1
AATGA	1																																																																																																																																															1
AATGC		1																																																																																																																																														1
AATTA	1																																																																																																																																															1
AATTC	4																																																																																																																																															4
AATTG	1																																																																																																																																															1
AATTT	4																																																																																																																																															4
ACAAC	1																																																																																																																																															1
ACACG			1																																																																																																																																													1
ACAGC	1																																																																																																																																															1
ACCAC		1																																																																																																																																														1
ACCAG	1																																																																																																																																															1
ACCCT	1																																																																																																																																															1
ACTGG	1																																																																																																																																															1
ACTGT	1																																																																																																																																															1
AGAAA	17	3																																																																																																																																														20
AGAAG	5																																																																																																																																															5
AGACT			1																																																																																																																																													1
AGAGA	4																																																																																																																																															4
AGAGG	1																																																																																																																																															1
AGATA	1																																																																																																																																															1
AGATG	2																																																																																																																																															2
AGCAA	2																																																																																																																																															2
AGCTG	2																																																																																																																																															2
AGGAA		1																																																																																																																																														1
AGGAG	1																																																																																																																																															1
AGGCA	1																																																																																																																																															1
AGGGA	1																																																																																																																																															1
AGGGG	1																																																																																																																																															1
AGGGT	1																																																																																																																																															1
AGGTA	1																																																																																																																																															1
AGGTT	2																																																																																																																																															2
AGTAC	2																																																																																																																																															2
AGTAT	2																																																																																																																																															2
AGTGC	1																																																																																																																																															1
AGTGT	1																																																																																																																																															1
AGTTT	1																																																																																																																																															1
ATAAA	12	3																																																																																																																																														15
ATAAT	4																																																																																																																																															4
ATACC	1																																																																																																																																															1
ATACT	2																																																																																																																																															2
ATAGA		1																																																																																																																																														1
ATAGG	1																																																																																																																																															1
ATATA	3																																																																																																																																															3
ATATT	4																																																																																																																																															4
ATCAC	1																																																																																																																																															1
ATCAT	1																																																																																																																																															1
ATCCA	1																																																																																																																																															1
ATCCC	2																																																																																																																																															2
ATCTA	1	1																																																																																																																																														2
ATCTC	2																																																																																																																																															2
ATCTT	1																																																																																																																																															1
ATGAT	1																																																																																																																																															1
ATGCT	1																																																																																																																																															1
ATGGG	1																																																																																																																																															1
ATTAA	2																																																																																																																																															2
ATTAG	1																																																																																																																																															1
ATTAT	2																																																																																																																																															2
ATTCA	1																																																																																																																																															1
ATTGG	1																																																																																																																																															1
ATTTA	5																																																																																																																																															5
ATTTC	2																																																																																																																																															2
ATTTG	1																																																																																																																																															1
ATTTT	12	1	1																																																																																																																																													14
CAAAA	1																																																																																																																																															1
CAAAT	3																																																																																																																																															3
CAACC	1																																																																																																																																															1
CAAGA			1																																																																																																																																													1
CAAGT	1																																																																																																																																															1
CAATA	1																																																																																																																																															1
CAATG	1																																																																																																																																															1
CAGAC	1																																																																																																																																															1
CAGCC	1																																																																																																																																															1
CAGGT	1																																																																																																																																															1
CAGTA	1																																																																																																																																															1
CAGTC	1																																																																																																																																															1
CAGTG	1																																																																																																																																															1
CAGTT	1																																																																																																																																															1
CATAT	2																																																																																																																																															2
CATCT		1																																																																																																																																														1
CATGG	1																																																																																																																																															1
CATGT	1																																																																																																																																															1
CATTT	2																																																																																																																																															2
CCAAA	1																																																																																																																																															1
CCAAC	2																																																																																																																																															2
CCACA	1																																																																																																																																															1
CCATT	2																																																																																																																																															2
CCCAA	2																																																																																																																																															2
CCCAT	1																																																																																																																																															1
CCCCT	2																																																																																																																																															2
CCCTC	1																																																																																																																																															1
CCCTT	1	1																																																																																																																																														2
CCGTA	1																																																																																																																																															1
CCGTG	1																																																																																																																																															1
CCTAA		1																																																																																																																																														1
CCTCA	1																																																																																																																																															1
CCTCT	2																																																																																																																																															2
CCTTT	2																																																																																																																																															2
CGAAC	1																																																																																																																																															1
CGACA	1																																																																																																																																															1
CGACT		1																																																																																																																																														1
CGATG	1																																																																																																																																															1
CGCAT	1																																																																																																																																															1
CGCGG	1																																																																																																																																															1
CGCTT	1																																																																																																																																															1
CGGTA	1																																																																																																																																															1
CGTCT	1																																																																																																																																															1
CTAAA		1																																																																																																																																														1
CTAGT	1																																																																																																																																															1
CTATA	2																																																																																																																																															2
CTCCC	2																																																																																																																																															2
CTCCG	1																																																																																																																																															1
CTCTT	2																																																																																																																																															2
CTGAA		1																																																																																																																																														1
CTGTA	1																																																																																																																																															1
CTGTC	1																																																																																																																																															1
CTTGT	1																																																																																																																																															1
CTTTC	1	1																																																																																																																																														2
CTTTG	2																																																																																																																																															2
CTTTT	16	1	1																																																																																																																																													18
GAAAA	9	3																																																																																																																																														12
GAAAG	2																																																																																																																																															2
GAACA	1																																																																																																																																															1
GAAGG	1																																																																																																																																															1
GACAG	1																																																																																																																																															1
GACCT	1																																																																																																																																															1
GACGG		1																																																																																																																																														1
GAGAA	1																																																																																																																																															1
GAGAG	1																																																																																																																																															1
GAGAT	1																																																																																																																																															1
GAGGG	1																																																																																																																																															1
GAGTC	1																																																																																																																																															1
GATAA	1																																																																																																																																															1
GATCT	1																																																																																																																																															1
GATGA	1																																																																																																																																															1
GATTA	1																																																																																																																																															1
GATTG	1																																																																																																																																															1
GCAGT	1																																																																																																																																															1
GCATG	1																																																																																																																																															1
GCCCC	1																																																																																																																																															1
GCCGA	1																																																																																																																																															1
GCGGG	1																																																																																																																																															1
GCGTG	1																																																																																																																																															1
GCTTT	2																																																																																																																																															2
GGAAA	1																																																																																																																																															1
GGAAG	2																																																																																																																																															2
GGAAT	1																																																																																																																																															1
GGAGG	2																																																																																																																																															2
GGAGT	1																																																																																																																																															1
GGATA	1																																																																																																																																															1
GGATG	1																																																																																																																																															1
GGCGA	1																																																																																																																																															1
GGGAA	1																																																																																																																																															1
GGGAG	1																																																																																																																																															1
GGGAT	1																																																																																																																																															1
GGGCT	1																																																																																																																																															1
GGGTG	1																																																																																																																																															1
GGGTT	1																																																																																																																																															1
GGTAT	2																																																																																																																																															2
GGTCT	1																																																																																																																																															1
GGTTA	1																																																																																																																																															1
GGTTT	1																																																																																																																																															1
GTACA	1	1																																																																																																																																														2
GTACC	1																																																																																																																																															1
GTACT	1																																																																																																																																															1
GTAGT	1																																																																																																																																															1
GTATG	1																																																																																																																																															1
GTATT	1																																																																																																																																															1
GTCCT		1																																																																																																																																														1
GTCGC	1																																																																																																																																															1
GTCTA	1																																																																																																																																															1
GTCTG	1																																																																																																																																															1
GTTCG	1																																																																																																																																															1
GTTTA	1																																																																																																																																															1
TAAAA	9																																																																																																																																															9
TAAAT	2																																																																																																																																															2
TAACC	12																																																																																																																																															12
TAATA	2																																																																																																																																															2
TAATC	2																																																																																																																																															2
TAATT	4																																																																																																																																															4
TACAG	2																																																																																																																																															2
TACAT	1																																																																																																																																															1
TACCA		1																																																																																																																																														1
TACCC	1																																																																																																																																															1
TACGG	1																																																																																																																																															1
TACGT	1																																																																																																																																															1
TAGAA	1																																																																																																																																															1
TAGAT	2																																																																																																																																															2
TAGCC	1																																																																																																																																															1
TAGGA	1																																																																																																																																															1
TAGGT	1																																																																																																																																															1
TAGTA	1																																																																																																																																															1
TAGTC	2																																																																																																																																															2
TATAA	3																																																																																																																																															3
TATAC	2																																																																																																																																															2
TATAG	1																																																																																																																																															1
TATAT	5																																																																																																																																															5
TATCA	1	1																																																																																																																																														2
TATCG	1																																																																																																																																															1
TATCT	1																																																																																																																																															1
TATGC	1																																																																																																																																															1
TATGG	1																																																																																																																																															1
TATTA	3																																																																																																																																															3
TATTC	1																																																																																																																																															1
TATTT	7	1	1																																																																																																																																													9
TCAAA	1																																																																																																																																															1
TCAAT	1																																																																																																																																															1
TCACC	4																																																																																																																																															4
TCAGC	2																																																																																																																																															2
TCATA	1																																																																																																																																															1
TCATC	1																																																																																																																																															1
TCCAA		1																																																																																																																																														1
TCCCC	1																																																																																																																																															1
TCCTC	1																																																																																																																																															1
TCCTG	2																																																																																																																																															2
TCGGC	1																																																																																																																																															1
TCGTT		1																																																																																																																																														1
TCTAC	1																																																																																																																																															1
TCTAT	1																																																																																																																																															1
TCTCT	3																																																																																																																																															3
TCTTC	3	1																																																																																																																																														4
TCTTT	7		1																																																																																																																																													8
TGAAA	1																																																																																																																																															1
TGAAT	1																																																																																																																																															1
TGACA	1	1																																																																																																																																														2
TGATT	2																																																																																																																																															2
TGCAT	1	1																																																																																																																																														2
TGCTA	1																																																																																																																																															1
TGGCT	1																																																																																																																																															1
TGGGT	1																																																																																																																																															1
TGGTT	1																																																																																																																																															1
TGTAC	1	2																																																																																																																																														3
TGTCG	1																																																																																																																																															1
TGTCT	2																																																																																																																																															2
TGTGG	1																																																																																																																																															1
TGTTA	1																																																																																																																																															1
TGTTG		1																																																																																																																																														1
TGTTT	4																																																																																																																																															4
TTAAA	2																																																																																																																																															2
TTAAT	3																																																																																																																																															3
TTATA	1																																																																																																																																															1
TTATC	1																																																																																																																																															1
TTATG	1																																																																																																																																															1
TTATT	12	2		1																																																																																																																																												15
TTCAT	1																																																																																																																																															1
TTCCA	1																																																																																																																																															1
TTCCC	2																																																																																																																																															2
TTCCT	1	1																																																																																																																																														2
TTCTA	1																																																																																																																																															1
TTCTC	1																																																																																																																																															1
TTCTT	15	3	2																																																																																																																																													20
TTGAA	1																																																																																																																																															1
TTGCA	1																																																																																																																																															1
TTGCT		1																																																																																																																																														1
TTGGG	1	1																																																																																																																																														2
TTGGT	2																																																																																																																																															2
TTGTC	1																																																																																																																																															1
TTTAA	4	1																																																																																																																																														5
TTTAT	10	3	1																																																																																																																																													14
TTTCA	3																																																																																																																																															3
TTTCC	2		2																																																																																																																																													4
TTTCG			1																																																																																																																																													1
TTTCT	16	5	2																																																																																																																																													23
TTTGA	1																																																																																																																																															1
TTTGG		1																																																																																																																																														1
TTTTA	19	8	1																																																																																																																																													28
TTTTC	41	14	2						1											1																																																																																																																												59
TTTTG	1			1																																																																																																																																												2
AAAAAC	1																																																																																																																																															1
AAAAAG	15	1	4																																																																																																																																													20
AAAAAT	11	4	3		1																																																																																																																																											19
AAAACA	3																																																																																																																																															3
AAAAGA	6	2																																																																																																																																														8
AAAAGC	1																																																																																																																																															1
AAAATA	10	1	1																																																																																																																																													12
AAAATC	1																																																																																																																																															1
AAAATG	3				1																																																																																																																																											4
AAAATT	2																																																																																																																																															2
AAACAG		1																																																																																																																																														1
AAACTG	1																																																																																																																																															1
AAAGAA	4																																																																																																																																															4
AAAGAG	1																																																																																																																																															1
AAAGCC	1																																																																																																																																															1
AAATAA	7	1																																																																																																																																														8
AAATCC	1																																																																																																																																															1
AAATTA	2																																																																																																																																															2
AACAAA	1																																																																																																																																															1
AACATG	1																																																																																																																																															1
AACCAG	1																																																																																																																																															1
AACCCC	1																																																																																																																																															1
AACGAA				1																																																																																																																																												1
AACGCC		1																																																																																																																																														1
AAGAAA	5																																																																																																																																															5
AAGAAC	1																																																																																																																																															1
AAGAGA	1																																																																																																																																															1
AAGCAA	1	1																																																																																																																																														2
AAGGAA	1																																																																																																																																															1
AAGGAG	1																																																																																																																																															1
AATAAA	3																																																																																																																																															3
AATATT	1	1																																																																																																																																														2
AATGAG	1																																																																																																																																															1
AATGTA		1																																																																																																																																														1
ACAAGA		1																																																																																																																																														1
ACACAA					1																																																																																																																																											1
ACCACG			1						1																																																																																																																																							2
ACCCAT		1																																																																																																																																														1
ACCGTG	2																																																																																																																																															2
ACTGGC	2																																																																																																																																															2
AGAAAA	7																																																																																																																																															7
AGAAAG	1																																																																																																																																															1
AGAATG	1																																																																																																																																															1
AGACAA	1																																																																																																																																															1
AGACGG	1																																																																																																																																															1
AGAGAC	1																																																																																																																																															1
AGAGCC		1																																																																																																																																														1
AGAGGG	1																																																																																																																																															1
AGAGTC	1																																																																																																																																															1
AGCGAG	1																																																																																																																																															1
AGCTGC	1																																																																																																																																															1
AGCTGG		1																																																																																																																																														1
AGGAGA		1																																																																																																																																														1
AGGCCC	1																																																																																																																																															1
AGGCCG	1																																																																																																																																															1
AGGGAG	1																																																																																																																																															1
AGGGCA	1																																																																																																																																															1
AGGGTC	1																																																																																																																																															1
AGGTGG			1																																																																																																																																													1
AGTACC	1																																																																																																																																															1
AGTCGG		1																																																																																																																																														1
ATAAAA	3	1																																																																																																																																														4
ATAACT	1																																																																																																																																															1
ATAATC	2																																																																																																																																															2
ATAATT	1																																																																																																																																															1
ATATAG	1	1																																																																																																																																														2
ATATCA		1																																																																																																																																														1
ATATTA	1																																																																																																																																															1
ATCAAA	1																																																																																																																																															1
ATCATT	1																																																																																																																																															1
ATCGTG	1																																																																																																																																															1
ATCTAT	1																																																																																																																																															1
ATCTCG	1																																																																																																																																															1
ATGACC	2																																																																																																																																															2
ATGCAT	1																																																																																																																																															1
ATGCCA	2																																																																																																																																															2
ATGCTG	1																																																																																																																																															1
ATGTAC	1																																																																																																																																															1
ATGTTG	1																																																																																																																																															1
ATTAAA	1																																																																																																																																															1
ATTAAT	1																																																																																																																																															1
ATTATA	1																																																																																																																																															1
ATTCTC		1																																																																																																																																														1
ATTGGG	1																																																																																																																																															1
ATTTAA		1																																																																																																																																														1
ATTTTA	4																																																																																																																																															4
ATTTTT	2	1																																																																																																																																														3
CAAAGG	1																																																																																																																																															1
CAACAG	1	1	1																																																																																																																																													3
CAACAT	1																																																																																																																																															1
CAACGA	1																																																																																																																																															1
CAAGAA	1																																																																																																																																															1
CAAGCA	1																																																																																																																																															1
CAATGC	1																																																																																																																																															1
CACAAA	2																																																																																																																																															2
CACATT	1																																																																																																																																															1
CACCAA	1																																																																																																																																															1
CACGAT					1																																																																																																																																											1
CACGGC	1																																																																																																																																															1
CACTCT	1																																																																																																																																															1
CACTTT	1																																																																																																																																															1
CAGAAG			1																																																																																																																																													1
CAGATA		1																																																																																																																																														1
CAGCAA	2																																																																																																																																															2
CAGCCG	1																																																																																																																																															1
CAGCTC	1																																																																																																																																															1
CAGCTT	1																																																																																																																																															1
CAGGAA	2																																																																																																																																															2
CAGTGG	2																																																																																																																																															2
CATCCC	1																																																																																																																																															1
CATCCT	1	1																																																																																																																																														2
CATCGT	1																																																																																																																																															1
CATGCT	1																																																																																																																																															1
CATGTG		1																																																																																																																																														1
CCAAAG	2																																																																																																																																															2
CCAACA	1																																																																																																																																															1
CCACAA	1																																																																																																																																															1
CCACGG	1																																																																																																																																															1
CCAGAC	1																																																																																																																																															1
CCAGAG	1																																																																																																																																															1
CCAGCG	1																																																																																																																																															1
CCAGGT	1																																																																																																																																															1
CCATTA	1																																																																																																																																															1
CCCCAC	1																																																																																																																																															1
CCCCTC	1																																																																																																																																															1
CCCGCC	1																																																																																																																																															1
CCCTCT	1																																																																																																																																															1
CCGAAG	1																																																																																																																																															1
CCGATG	1																																																																																																																																															1
CCGCCT	1																																																																																																																																															1
CCGCTG	1																																																																																																																																															1
CCTATT	1																																																																																																																																															1
CCTCAA	1																																																																																																																																															1
CCTCAC	1																																																																																																																																															1
CCTCCA	1																																																																																																																																															1
CCTCCG	1																																																																																																																																															1
CCTCTT		1																																																																																																																																														1
CCTGCC	1																																																																																																																																															1
CCTGCG	1																																																																																																																																															1
CCTGTG	1																																																																																																																																															1
CCTTTG	1																																																																																																																																															1
CCTTTT	2																																																																																																																																															2
CGAAGC	1																																																																																																																																															1
CGAGAC	1																																																																																																																																															1
CGATAG		1																																																																																																																																														1
CGATCC	1																																																																																																																																															1
CGCAGC	1	1																																																																																																																																														2
CGCCGA	2																																																																																																																																															2
CGCTGC	1																																																																																																																																															1
CGGCGC	1																																																																																																																																															1
CGGGTT	1																																																																																																																																															1
CGGTGC		1																																																																																																																																														1
CGTGAT	1																																																																																																																																															1
CTACCA	2																																																																																																																																															2
CTATTC	1																																																																																																																																															1
CTCAGA		1																																																																																																																																														1
CTCATC	1																																																																																																																																															1
CTCCAA	1																																																																																																																																															1
CTCCGA	1																																																																																																																																															1
CTCTTC		1																																																																																																																																														1
CTCTTT	1																																																																																																																																															1
CTGAAC	2																																																																																																																																															2
CTGACT	1																																																																																																																																															1
CTGATT	1																																																																																																																																															1
CTGCCG		1																																																																																																																																														1
CTGCTC	1																																																																																																																																															1
CTGGCT	3																																																																																																																																															3
CTGTTG	1																																																																																																																																															1
CTTCTA	1																																																																																																																																															1
CTTCTC	1																																																																																																																																															1
CTTTTT	4	1																																																																																																																																														5
GAAAAA	3	3																																																																																																																																														6
GAAAAT	1																																																																																																																																															1
GAAGAC	1																																																																																																																																															1
GAAGAG	1																																																																																																																																															1
GAATTA	1																																																																																																																																															1
GACAAG	1																																																																																																																																															1
GACAGC	1																																																																																																																																															1
GACCAG		1																																																																																																																																														1
GACCCT	1																																																																																																																																															1
GACGAT	2																																																																																																																																															2
GACGCA	1																																																																																																																																															1
GAGATG	1																																																																																																																																															1
GAGCCC		1																																																																																																																																														1
GAGGAA	2																																																																																																																																															2
GAGGAC	1																																																																																																																																															1
GAGGAT	1																																																																																																																																															1
GAGGGC	1																																																																																																																																															1
GAGTTG	1																																																																																																																																															1
GATAGG	1																																																																																																																																															1
GATCGA	1																																																																																																																																															1
GATCGC	1																																																																																																																																															1
GATGAA	2	1																																																																																																																																														3
GATGAC	2																																																																																																																																															2
GATGAG			1																																																																																																																																													1
GATGGT	1																																																																																																																																															1
GCAAAA	2																																																																																																																																															2
GCACCT	1																																																																																																																																															1
GCCACC	1																																																																																																																																															1
GCCACG	1																																																																																																																																															1
GCCGCT		1																																																																																																																																														1
GCGATG	1																																																																																																																																															1
GCGCTC	1																																																																																																																																															1
GCGGCT	1																																																																																																																																															1
GCTAGA	1																																																																																																																																															1
GCTATG	1																																																																																																																																															1
GCTCAG		1																																																																																																																																														1
GCTCAT		1																																																																																																																																														1
GCTGCG	1																																																																																																																																															1
GCTGGA	1																																																																																																																																															1
GCTGGC	1																																																																																																																																															1
GCTTTT	1																																																																																																																																															1
GGAAAA	1																																																																																																																																															1
GGAAGA	1																																																																																																																																															1
GGAATT	1																																																																																																																																															1
GGACGC	1																																																																																																																																															1
GGAGAA	2																																																																																																																																															2
GGAGAG	1																																																																																																																																															1
GGAGCC		1																																																																																																																																														1
GGAGGC	1																																																																																																																																															1
GGAGGG	1																																																																																																																																															1
GGATGA	1																																																																																																																																															1
GGATTC	2																																																																																																																																															2
GGCGAT	1																																																																																																																																															1
GGCGGT	1																																																																																																																																															1
GGCTGC	1																																																																																																																																															1
GGCTGG		1																																																																																																																																														1
GGGAGG	1																																																																																																																																															1
GGGGTA	1																																																																																																																																															1
GGGGTT	1																																																																																																																																															1
GGGTTG	1																																																																																																																																															1
GGTATT	1																																																																																																																																															1
GGTGAG	1																																																																																																																																															1
GGTGTC	1																																																																																																																																															1
GGTGTG	1																																																																																																																																															1
GTAGTC	1																																																																																																																																															1
GTATGT	1																																																																																																																																															1
GTCATG	1																																																																																																																																															1
GTCGCA			1																																																																																																																																													1
GTCTTA	1																																																																																																																																															1
GTGAGA		1																																																																																																																																														1
GTGCTC	1																																																																																																																																															1
GTGCTT	1																																																																																																																																															1
GTGGCA	1																																																																																																																																															1
GTGGCG	1																																																																																																																																															1
GTGGTT		1																																																																																																																																														1
GTGTAG		1																																																																																																																																														1
GTGTCC	1																																																																																																																																															1
GTGTGC	1																																																																																																																																															1
GTGTTG	1																																																																																																																																															1
GTTACT	1																																																																																																																																															1
GTTCAC		1																																																																																																																																														1
GTTGTC	1																																																																																																																																															1
TAAAAA	2																																																																																																																																															2
TAAAAT	1																																																																																																																																															1
TAAATC	1																																																																																																																																															1
TAACAC	1																																																																																																																																															1
TAAGAA	1																																																																																																																																															1
TAATAT	1																																																																																																																																															1
TAATTA	1																																																																																																																																															1
TACTAT	1																																																																																																																																															1
TAGATA		1																																																																																																																																														1
TAGTGC	1																																																																																																																																															1
TATACT	1																																																																																																																																															1
TATCTA	1																																																																																																																																															1
TATCTT		1																																																																																																																																														1
TATTAA	1																																																																																																																																															1
TATTTT	5	1																																																																																																																																														6
TCAACA	1																																																																																																																																															1
TCACAT	1																																																																																																																																															1
TCAGAC	1																																																																																																																																															1
TCAGGC			1																																																																																																																																													1
TCATCC	1																																																																																																																																															1
TCATCG	1																																																																																																																																															1
TCCAGC	1																																																																																																																																															1
TCCCAA		1																																																																																																																																														1
TCCCCT	1																																																																																																																																															1
TCCCTC	1																																																																																																																																															1
TCCTCA		2																																																																																																																																														2
TCCTCG	1																																																																																																																																															1
TCCTCT	2																																																																																																																																															2
TCCTTC	1																																																																																																																																															1
TCCTTT	1																																																																																																																																															1
TCGCAA	1																																																																																																																																															1
TCGGCA	1																																																																																																																																															1
TCGGGA	1																																																																																																																																															1
TCGGGT	1																																																																																																																																															1
TCGTCA	1																																																																																																																																															1
TCGTCC	1																																																																																																																																															1
TCGTGT	1																																																																																																																																															1
TCTCCT		1																																																																																																																																														1
TCTGAA	1																																																																																																																																															1
TCTGCA	1																																																																																																																																															1
TCTGCT	1																																																																																																																																															1
TCTTCA	1	1																																																																																																																																														2
TCTTCC	2	1																																																																																																																																														3
TCTTCG	1																																																																																																																																															1
TCTTGT	1																																																																																																																																															1
TCTTTT	3	1																																																																																																																																														4
TGACGA		1																																																																																																																																														1
TGACTA	1																																																																																																																																															1
TGAGAG	1																																																																																																																																															1
TGAGCG	1																																																																																																																																															1
TGAGGA	1																																																																																																																																															1
TGAGTA	1																																																																																																																																															1
TGATGT				1																																																																																																																																												1
TGATTC		1																																																																																																																																														1
TGCAAC	1																																																																																																																																															1
TGCATA	1																																																																																																																																															1
TGCCCC	1																																																																																																																																															1
TGCGGC	1																																																																																																																																															1
TGCGGT	1																																																																																																																																															1
TGGAGC	1																																																																																																																																															1
TGGCGT	1																																																																																																																																															1
TGGCTC	1																																																																																																																																															1
TGGCTG	1																																																																																																																																															1
TGGGTT			1																																																																																																																																													1
TGGTAG	1																																																																																																																																															1
TGGTCG	1																																																																																																																																															1
TGGTCT	1																																																																																																																																															1
TGGTGA	1																																																																																																																																															1
TGGTGT	2																																																																																																																																															2
TGGTTC	1																																																																																																																																															1
TGTCCT	1																																																																																																																																															1
TGTGAC	1																																																																																																																																															1
TGTGTA	1	1																																																																																																																																														2
TGTGTT	1																																																																																																																																															1
TGTTGC		1																																																																																																																																														1
TGTTGG	1																																																																																																																																															1
TGTTTT	1																																																																																																																																															1
TTAAAA		1																																																																																																																																														1
TTAATA	4																																																																																																																																															4
TTAATT	1																																																																																																																																															1
TTATTG		1																																																																																																																																														1
TTATTT	6																																																																																																																																															6
TTCGTT	1																																																																																																																																															1
TTCTCT		1																																																																																																																																														1
TTCTTG		1																																																																																																																																														1
TTCTTT	3																																																																																																																																															3
TTGACG	1																																																																																																																																															1
TTGATC	1																																																																																																																																															1
TTGATT	1																																																																																																																																															1
TTGGAA	1																																																																																																																																															1
TTGGTG	1																																																																																																																																															1
TTGTAA	1																																																																																																																																															1
TTTAAT	1																																																																																																																																															1
TTTACT	1																																																																																																																																															1
TTTAGA	2																																																																																																																																															2
TTTATA	1																																																																																																																																															1
TTTATT	3	4			1																																																																																																																																											8
TTTCAT	2	1																																																																																																																																														3
TTTCCA	1																																																																																																																																															1
TTTCCC	1																																																																																																																																															1
TTTCCT	1																																																																																																																																															1
TTTCTA	1																																																																																																																																															1
TTTCTC	3																																																																																																																																															3
TTTCTT	5	1	1																																																																																																																																													7
TTTGAA	1																																																																																																																																															1
TTTGAT	1																																																																																																																																															1
TTTGCA	1																																																																																																																																															1
TTTGGG	1																																																																																																																																															1
TTTTAC	1																																																																																																																																															1
TTTTAT	5	1																																																																																																																																														6
TTTTCC	1																																																																																																																																															1
TTTTCT	4	2							1																																																																																																																																							7
TTTTGC	1																																																																																																																																															1
TTTTTA	9																																																																																																																																															9
TTTTTC	12	3																																																																																																																																														15

Frequency of classified repeat types (considering sequence complementary)
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Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	43	28	24	20	12	10	10	6	8	12	8	1	1	4	1	4	1	2		3	3	1	1		1	2		1	1	2		1			3	2				1	1		1						1		1	1	1							1				1	1			1		1			1				1		1	1																																														1	233
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1						1	1			1																																													1																											1																																										9
AC/GT	-	-	-	37	18	12	7	9	4	3	4	2	2	1			1	1	2			1	1		2						1																																																																																																																	108
AG/CT	-	-	-	89	49	23	21	12	10	5		8	3		1		2	3			1	2			1	1	2				1																																																																																																																	234
AT/AT	-	-	-	203	69	31	24	21	15	8	4	4	4							1																																																																																																																												384
CG/CG	-	-	-	4																																																																																																																																												4
AAC/GTT	-	-	24	12	4		4	2		2																																																																																																																																						48
AAG/CTT	-	-	48	19	16	7	2	4	2		1	1	2	2		1				1	1		1		1					1																																																																																																																		110
AAT/ATT	-	-	63	24	6	6	5	6	3	1		2										1	1																																																																																																																									118
ACC/GGT	-	-	21	7	2	1	1																																																																																																																																									32
ACG/CGT	-	-	15					1																																																																																																																																								16
ACT/AGT	-	-	14	7	4	4	2	1	2	1	3		1	2	2			1			1								1					1																																																																																																														47
AGC/CTG	-	-	28	12	6	3	1	2	1																																																																																																																																							53
AGG/CCT	-	-	18	6	9		2	1	1	1							1																																																																																																																															39
ATC/ATG	-	-	32	7	2	4	3		1			1				1						1																																																																																																																										52
CCG/CGG	-	-	16	6	1	1																																																																																																																																										24
AAAC/GTTT	-	4	5																																																																																																																																													9
AAAG/CTTT	-	53	23	13	2		2	1					1																																																																																																																																			95
AAAT/ATTT	-	55	16	4		1																																																																																																																																										76
AACC/GGTT	-	4			1																																																																																																																																											5
AACT/AGTT	-	2																																																																																																																																														2
AAGC/CTTG	-	3																																																																																																																																														3
AAGG/CCTT	-	4		1																																																																																																																																												5
AATC/ATTG	-	20	5	7	1		1																																																																																																																																									34
AATG/ATTC	-	11	5	1	1	1																																																																																																																																										19
AATT/AATT	-	6	1																																																																																																																																													7
ACAG/CTGT	-	5																																																																																																																																														5
ACAT/ATGT	-	38	8	4	5	2	1	1																																																																																																																																								59
ACCG/CGGT	-	2																																																																																																																																														2
ACCT/AGGT	-	3			1																																																																																																																																											4
ACGG/CCGT	-	1	1																																																																																																																																													2
ACTC/AGTG	-	10	1		1																																																																																																																																											12
ACTG/AGTC	-	2																																																																																																																																														2
AGAT/ATCT	-	11	3	1																																																																																																																																												15
AGCC/CTGG	-	1																																																																																																																																														1
AGCG/CGCT	-	1																																																																																																																																														1
AGGC/CCTG	-	2																																																																																																																																														2
AGGG/CCCT	-	2	1																																																																																																																																													3
ATCC/ATGG	-	4	2																																																																																																																																													6
AAAAC/GTTTT	12			1																																																																																																																																												13
AAAAG/CTTTT	180	44	16	1					1		1									1																																																																																																																												244
AAAAT/ATTTT	140	30	6	1																																																																																																																																												177
AAACC/GGTTT	6	1																																																																																																																																														7
AAACG/CGTTT	1	1	1																																																																																																																																													3
AAACT/AGTTT	6	1																																																																																																																																														7
AAAGC/CTTTG	6	1																																																																																																																																														7
AAAGG/CCTTT	13	3	2																																																																																																																																													18
AAATC/ATTTG	8																																																																																																																																															8
AAATG/ATTTC	14																																																																																																																																															14
AAATT/AATTT	31	1																																																																																																																																														32
AACAC/GTGTT	1	1																																																																																																																																														2
AACAG/CTGTT	1																																																																																																																																															1
AACAT/ATGTT	3																																																																																																																																															3
AACCC/GGGTT	8	1																																																																																																																																														9
AACCG/CGGTT	2																																																																																																																																															2
AACCT/AGGTT	16	1																																																																																																																																														17
AACGT/ACGTT	1																																																																																																																																															1
AACTC/AGTTG	1																																																																																																																																															1
AACTG/AGTTC	1	1																																																																																																																																														2
AAGAC/CTTGT	4		1																																																																																																																																													5
AAGAG/CTCTT	19	1																																																																																																																																														20
AAGAT/ATCTT	5																																																																																																																																															5
AAGCC/CTTGG	1																																																																																																																																															1
AAGCG/CGCTT	1																																																																																																																																															1
AAGGC/CCTTG	2																																																																																																																																															2
AAGGG/CCCTT	9	1																																																																																																																																														10
AAGGT/ACCTT	1																																																																																																																																															1
AAGTC/ACTTG	1																																																																																																																																															1
AATAC/ATTGT	2																																																																																																																																															2
AATAG/ATTCT	5	1																																																																																																																																														6
AATAT/ATATT	33																																																																																																																																															33
AATCC/ATTGG	4	1																																																																																																																																														5
AATCT/AGATT	7	1																																																																																																																																														8
AATGC/ATTGC	3	2																																																																																																																																														5
AATGG/ATTCC	4																																																																																																																																															4
AATGT/ACATT	1																																																																																																																																															1
AATTC/AATTG	9																																																																																																																																															9
ACACC/GGTGT	2	1																																																																																																																																														3
ACACG/CGTGT	2		1																																																																																																																																													3
ACACT/AGTGT	2																																																																																																																																															2
ACAGC/CTGTG	1																																																																																																																																															1
ACAGG/CCTGT	4	1																																																																																																																																														5
ACAGT/ACTGT	10	3																																																																																																																																														13
ACATC/ATGTG	1																																																																																																																																															1
ACATG/ATGTC	2	1																																																																																																																																														3
ACCAG/CTGGT	4																																																																																																																																															4
ACCAT/ATGGT	5	1																																																																																																																																														6
ACCCC/GGGGT	1																																																																																																																																															1
ACCCT/AGGGT	3																																																																																																																																															3
ACCGT/ACGGT	4																																																																																																																																															4
ACCTC/AGGTG	5																																																																																																																																															5
ACCTG/AGGTC	2																																																																																																																																															2
ACGAG/CGTCT	1																																																																																																																																															1
ACGAT/ATCGT	1																																																																																																																																															1
ACGCC/CGTGG	1																																																																																																																																															1
ACGCG/CGCGT	1																																																																																																																																															1
ACGGC/CCGTG	1																																																																																																																																															1
ACGGG/CCCGT		1																																																																																																																																														1
ACTAG/AGTCT	4		1																																																																																																																																													5
ACTAT/AGTAT	10																																																																																																																																															10
ACTCC/AGTGG	1																																																																																																																																															1
ACTCG/AGTCG	1	1																																																																																																																																														2
ACTCT/AGAGT	1																																																																																																																																															1
ACTGC/AGTGC	3																																																																																																																																															3
ACTGG/AGTCC	2																																																																																																																																															2
AGAGG/CCTCT	6																																																																																																																																															6
AGATC/ATCTG	1																																																																																																																																															1
AGATG/ATCTC	7	1																																																																																																																																														8
AGCAT/ATGCT	3																																																																																																																																															3
AGCCC/CTGGG	2																																																																																																																																															2
AGCCG/CGGCT	2																																																																																																																																															2
AGCCT/AGGCT	1																																																																																																																																															1
AGCGG/CCGCT	1																																																																																																																																															1
AGCTC/AGCTG	4																																																																																																																																															4
AGGAT/ATCCT	3																																																																																																																																															3
AGGCG/CCTCG	1																																																																																																																																															1
AGGGG/CCCCT	11																																																																																																																																															11
ATATC/ATATG	6	1																																																																																																																																														7
ATCCC/ATGGG	6																																																																																																																																															6
ATCGC/ATGCG	2																																																																																																																																															2
ATGCC/ATGGC	2																																																																																																																																															2
CCCCG/CGGGG	2																																																																																																																																															2
CCGCG/CGCGG	1																																																																																																																																															1
AAAAAC/GTTTTT	6																																																																																																																																															6
AAAAAG/CTTTTT	71	14	5						1																																																																																																																																							91
AAAAAT/ATTTTT	66	14	4		2																																																																																																																																											86
AAAACG/CGTTTT	1			1																																																																																																																																												2
AAAAGC/CTTTTG	6	1																																																																																																																																														7
AAAAGG/CCTTTT	7																																																																																																																																															7
AAAAGT/ACTTTT	2																																																																																																																																															2
AAAATC/ATTTTG	4																																																																																																																																															4
AAAATG/ATTTTC	6	1			1																																																																																																																																											8
AAAATT/AATTTT	12	1																																																																																																																																														13
AAACAC/GTGTTT	3				1																																																																																																																																											4
AAACAG/CTGTTT		1																																																																																																																																														1
AAACCC/GGGTTT	1		1																																																																																																																																													2
AAACTG/AGTTTC	1																																																																																																																																															1
AAAGAC/CTTTGT	1																																																																																																																																															1
AAAGAG/CTCTTT	7	1																																																																																																																																														8
AAAGAT/ATCTTT		1																																																																																																																																														1
AAAGCC/CTTTGG	3																																																																																																																																															3
AAAGGC/CCTTTG	2																																																																																																																																															2
AAAGGG/CCCTTT	1																																																																																																																																															1
AAAGTG/ACTTTC	1																																																																																																																																															1
AAATAG/ATTTCT	1																																																																																																																																															1
AAATAT/ATATTT	1																																																																																																																																															1
AAATCC/ATTTGG	1																																																																																																																																															1
AAATCT/AGATTT	3																																																																																																																																															3
AAATGC/ATTTGC	1																																																																																																																																															1
AAATGG/ATTTCC	1																																																																																																																																															1
AAATGT/ACATTT		1																																																																																																																																														1
AAATTC/AATTTG	1																																																																																																																																															1
AAATTT/AAATTT		1																																																																																																																																														1
AACAAG/CTTGTT	3	2																																																																																																																																														5
AACAAT/ATTGTT		1																																																																																																																																														1
AACACC/GGTGTT	7																																																																																																																																															7
AACACG/CGTGTT	1																																																																																																																																															1
AACACT/AGTGTT	1																																																																																																																																															1
AACAGC/CTGTTG	4	2	1																																																																																																																																													7
AACAGG/CCTGTT	2																																																																																																																																															2
AACAGT/ACTGTT	1																																																																																																																																															1
AACATC/ATGTTG	3			1																																																																																																																																												4
AACATG/ATGTTC	1																																																																																																																																															1
AACCAC/GGTTGT	1	1																																																																																																																																														2
AACCAG/CTGGTT	2																																																																																																																																															2
AACCCC/GGGGTT	3																																																																																																																																															3
AACCCG/CGGGTT	2																																																																																																																																															2
AACCGC/CGGTTG	1																																																																																																																																															1
AACCTC/AGGTTG	1																																																																																																																																															1
AACCTG/AGGTTC	2																																																																																																																																															2
AACGAC/CGTTGT	2																																																																																																																																															2
AACGCC/CGTTGG	1	1																																																																																																																																														2
AACGTC/ACGTTG	1																																																																																																																																															1
AACGTG/ACGTTC		1																																																																																																																																														1
AACTAT/AGTTAT	1																																																																																																																																															1
AACTCC/AGTTGG	2																																																																																																																																															2
AACTGC/AGTTGC	1																																																																																																																																															1
AAGAAT/ATTCTT	1																																																																																																																																															1
AAGACC/CTTGGT	1																																																																																																																																															1
AAGACG/CGTCTT	2																																																																																																																																															2
AAGACT/AGTCTT	1																																																																																																																																															1
AAGAGG/CCTCTT	8	3																																																																																																																																														11
AAGATC/ATCTTG	1																																																																																																																																															1
AAGATG/ATCTTC	3	2																																																																																																																																														5
AAGCAC/CTTGTG	2																																																																																																																																															2
AAGCAG/CTGCTT	1		1																																																																																																																																													2
AAGCCG/CGGCTT	2																																																																																																																																															2
AAGCTG/AGCTTC	1																																																																																																																																															1
AAGGAC/CCTTGT	2																																																																																																																																															2
AAGGAG/CCTTCT	5	2																																																																																																																																														7
AAGGGC/CCCTTG	1																																																																																																																																															1
AAGGGG/CCCCTT	1																																																																																																																																															1
AAGTAG/ACTTCT	1																																																																																																																																															1
AAGTAT/ACTTAT	1																																																																																																																																															1
AATACC/ATTGGT	1																																																																																																																																															1
AATAGG/ATTCCT	2																																																																																																																																															2
AATAGT/ACTATT	1																																																																																																																																															1
AATATC/ATATTG		1																																																																																																																																														1
AATATT/AATATT	9	1																																																																																																																																														10
AATCAG/ATTCTG	1	1																																																																																																																																														2
AATCAT/ATGATT	2																																																																																																																																															2
AATCCC/ATTGGG	1	1																																																																																																																																														2
AATCCG/ATTCGG	2																																																																																																																																															2
AATCGC/ATTGCG	1																																																																																																																																															1
AATCTG/AGATTC	1																																																																																																																																															1
AATGAG/ATTCTC	2	1																																																																																																																																														3
AATGAT/ATCATT	1																																																																																																																																															1
AATGCC/ATTGGC	3																																																																																																																																															3
AATGGT/ACCATT	1																																																																																																																																															1
AATGTG/ACATTC	2																																																																																																																																															2
AATTAC/AATTGT	1																																																																																																																																															1
AATTAG/AATTCT	1																																																																																																																																															1
AATTAT/AATTAT	3																																																																																																																																															3
AATTCC/AATTGG	2																																																																																																																																															2
ACACAT/ATGTGT	2	1																																																																																																																																														3
ACACCC/GGGTGT	1																																																																																																																																															1
ACACCG/CGGTGT	1																																																																																																																																															1
ACACCT/AGGTGT		1																																																																																																																																														1
ACACGC/CGTGTG	1																																																																																																																																															1
ACACGG/CCGTGT	1																																																																																																																																															1
ACAGAG/CTCTGT	1																																																																																																																																															1
ACAGAT/ATCTGT		1																																																																																																																																														1
ACAGCC/CTGTGG	1																																																																																																																																															1
ACAGCG/CGCTGT	1																																																																																																																																															1
ACAGGC/CCTGTG	1																																																																																																																																															1
ACAGTC/ACTGTG	1																																																																																																																																															1
ACATGC/ATGTGC		1																																																																																																																																														1
ACATGT/ACATGT	1																																																																																																																																															1
ACCACG/CGTGGT	1		1						1																																																																																																																																							3
ACCACT/AGTGGT	3																																																																																																																																															3
ACCAGG/CCTGGT		1																																																																																																																																														1
ACCAGT/ACTGGT	1																																																																																																																																															1
ACCATC/ATGGTG	2																																																																																																																																															2
ACCATG/ATGGTC	3																																																																																																																																															3
ACCCAG/CTGGGT	1																																																																																																																																															1
ACCCAT/ATGGGT		1																																																																																																																																														1
ACCCCC/GGGGGT	1																																																																																																																																															1
ACCCCT/AGGGGT	1																																																																																																																																															1
ACCCTC/AGGGTG	2																																																																																																																																															2
ACCCTG/AGGGTC	2																																																																																																																																															2
ACCGAG/CGGTCT	1																																																																																																																																															1
ACCGCC/CGGTGG	3																																																																																																																																															3
ACCGGC/CCGGTG		1																																																																																																																																														1
ACCGTG/ACGGTC	2																																																																																																																																															2
ACCTCC/AGGTGG	1		1																																																																																																																																													2
ACCTGC/AGGTGC	1																																																																																																																																															1
ACCTGG/AGGTCC	1																																																																																																																																															1
ACGACT/AGTCGT	1																																																																																																																																															1
ACGAGC/CGTGCT	1																																																																																																																																															1
ACGAGG/CCTCGT	3																																																																																																																																															3
ACGATC/ATCGTG	2				1																																																																																																																																											3
ACGATG/ATCGTC	7	1																																																																																																																																														8
ACGCAG/CGTCTG	1																																																																																																																																															1
ACGCCG/CGGCGT	2																																																																																																																																															2
ACGCGG/CCGCGT	1																																																																																																																																															1
ACGCTC/AGCGTG	1																																																																																																																																															1
ACGGAG/CCGTCT	1																																																																																																																																															1
ACGGCC/CCGTGG	3																																																																																																																																															3
ACTAGC/AGTGCT	1																																																																																																																																															1
ACTATG/AGTCAT	1																																																																																																																																															1
ACTCAG/AGTCTG	1	1																																																																																																																																														2
ACTCAT/AGTATG	1																																																																																																																																															1
ACTCCG/AGTCGG	1	1																																																																																																																																														2
ACTCTC/AGAGTG	2	1																																																																																																																																														3
ACTCTG/AGAGTC	2																																																																																																																																															2
ACTGCC/AGTGGC	3																																																																																																																																															3
ACTGCG/AGTCGC			1																																																																																																																																													1
ACTGGC/AGTGCC	2																																																																																																																																															2
AGAGCC/CTCTGG	5	1																																																																																																																																														6
AGAGCG/CGCTCT	1																																																																																																																																															1
AGAGCT/AGCTCT	1																																																																																																																																															1
AGAGGG/CCCTCT	5																																																																																																																																															5
AGATAT/ATATCT	3	2																																																																																																																																														5
AGATCG/ATCTCG	2																																																																																																																																															2
AGATGC/ATCTGC	1																																																																																																																																															1
AGATGG/ATCTCC	1																																																																																																																																															1
AGCAGG/CCTGCT	1																																																																																																																																															1
AGCATC/ATGCTG	1																																																																																																																																															1
AGCATG/ATGCTC	1	1																																																																																																																																														2
AGCCAT/ATGGCT	1																																																																																																																																															1
AGCCCC/CTGGGG		1																																																																																																																																														1
AGCCCG/CGGGCT		1																																																																																																																																														1
AGCCGC/CGGCTG	6	1																																																																																																																																														7
AGCCGG/CCGGCT		1																																																																																																																																														1
AGCCTG/AGGCTC		1	1																																																																																																																																													2
AGCGAT/ATCGCT		1																																																																																																																																														1
AGCGCC/CGCTGG	2																																																																																																																																															2
AGCGCG/CGCGCT	1																																																																																																																																															1
AGCGGC/CCGCTG	2	2																																																																																																																																														4
AGCTCC/AGCTGG	4	1																																																																																																																																														5
AGCTGC/AGCTGC	1																																																																																																																																															1
AGGATG/ATCCTC	6	3	1																																																																																																																																													10
AGGCCC/CCTGGG	1																																																																																																																																															1
AGGCCG/CCTCGG	1																																																																																																																																															1
AGGCGC/CCTGCG	1																																																																																																																																															1
AGGCGG/CCGCCT	3																																																																																																																																															3
AGGGAT/ATCCCT	1																																																																																																																																															1
AGGGCG/CCCTCG	1																																																																																																																																															1
AGGGGC/CCCCTG	2																																																																																																																																															2
AGGGGG/CCCCCT	3																																																																																																																																															3
ATATGC/ATATGC	2																																																																																																																																															2
ATCCCC/ATGGGG	1																																																																																																																																															1
ATCCCG/ATCGGG	2																																																																																																																																															2
ATCGCC/ATGGCG	2																																																																																																																																															2
ATCGCG/ATCGCG	1																																																																																																																																															1
ATCGGC/ATGCCG	2																																																																																																																																															2
CCCCCG/CGGGGG	1																																																																																																																																															1
CCGGCG/CCGGCG	1																																																																																																																																															1
