Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_012897115.1/fasta/hub_GCA_012897115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           37048638
Total number of identified SSRs:                 3381
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    346


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	567
2	636
3	499
4	340
5	782
6	557

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	19	21	11	15	21	16	18	10	11	7	4	4	5	1	1	4	1	2	4	3	2	2	3	2	1	2		1	2	1		1		3	2	1		1	1							1	2	1	1	2		2	4	4	6	4	5	7		242
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	4	6	3	2	3	3	2	1	3	2			1	3	1	1	1			1		1				1			1		1			1	1	1	1								1										1	2			54
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	6	3		3	1	2		2						1	1	1	1		1	1			1		1	2	1		1								1					1	2					1		1			1				1	44
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	21	16	19	17	17	13	7	15	11	5	3	6	2	7	1	4	1	2	1	3	4	2	2		2			1		2	2	2	2			1	1		2	1	1	1		1		1	2	1				3	2	2	6	7	2	3		227
AC	-	-	-	6	3	2	1		1	1	2	1		1		1	1				2																																																								22
AG	-	-	-	20	15	10	7	4	7	1		1	2	4		1			1																																																										73
AT	-	-	-	61	26	9	7	6	2	5	2	2	1	1																																																															122
CA	-	-	-	14	3	3	2	2	2				1			1				2																																																									30
CT	-	-	-	28	7	7	8	2		2	1	1	1																																																																57
GA	-	-	-	12	9	5	4		2	2		1	1	2			1									1																																																			40
GC	-	-	-	2		1																																																																							3
GT	-	-	-	14	3	1	1	2	2	1	1					1	1			1				1												2																																									31
TA	-	-	-	71	26	10	8	5	2	5	4	1																																																																	132
TC	-	-	-	36	19	14	7	7	5	2	2			1	2			2		2		1																																																							100
TG	-	-	-	9	4	3	1	1	1	1	1			1	1	1										1								1																																											26
AAC	-	-	3	1	1					1		1																																																																	7
AAG	-	-	14	6	2	2		1		1				1			1						1																																																						29
AAT	-	-	9	3	4	2	1	1	1	1		1											1																																																						24
ACA	-	-	1	1	2	1	1	1																																																																					7
ACC	-	-	4	2			1																																																																						7
ACG	-	-	1																																																																										1
ACT	-	-	1			1					1										1		1												1																																										6
AGA	-	-	8	5																																																																									13
AGC	-	-		1		2																																																																							3
AGG	-	-		3	1				1																																																																				5
AGT	-	-	3		1						1																																																																		5
ATA	-	-	5	4							1					1							1																																																						12
ATC	-	-	1	2	1																																																																								4
ATG	-	-	3	2	1																																																																								6
ATT	-	-	7	4	1																											1																																													13
CAA	-	-	5	3				1																																																																					9
CAC	-	-	2					2	1																																																																				5
CAG	-	-	4	2	1	1	1																																																																						9
CAT	-	-	6		1					1																																																																			8
CCA	-	-	5	1																																																																									6
CCG	-	-	1	1																																																																									2
CCT	-	-	2						1																																																																				3
CGA	-	-	5																																																																										5
CGC	-	-	3		1																																																																								4
CGG	-	-	1			1																																																																							2
CGT	-	-	1																																																																										1
CTA	-	-	6					1		1																																																																			8
CTC	-	-	4	1	1	1	1	1																																																																					9
CTG	-	-	5	3	1																																																																								9
CTT	-	-	15	5	2	1	1	1			1	1					1						1																																																						29
GAA	-	-	4	1	1	2		1		1													1																																																						11
GAC	-	-	3		2																																																																								5
GAG	-	-	3	2	1												1																																																												7
GAT	-	-	6		1	1	1			1																																																																			10
GCA	-	-	5	3																																																																									8
GCC	-	-	8	3																																																																									11
GCG	-	-	2																																																																										2
GCT	-	-	3	1																																																																									4
GGA	-	-	3			1																																																																							4
GGC	-	-	7	3																																																																									10
GGT	-	-	4	1																																																																									5
GTA	-	-	1	2	1																																																																								4
GTC	-	-				1																																																																							1
GTG	-	-	1	1	1	1																																																																							4
GTT	-	-	6	1																																																																									7
TAA	-	-	2	2		1		1																																																																					6
TAC	-	-			1			2							1								2																																																						6
TAG	-	-	2		3									1																																																															6
TAT	-	-	12	3			1						1																																																																17
TCA	-	-	5	1	1																																																																								7
TCC	-	-	3	1		1		1											1																																																										7
TCG	-	-	1																																																																										1
TCT	-	-	6	1	2		1	2	1																																																																				13
TGA	-	-	6	2		1																																																																							9
TGC	-	-	4	2	4	3	1																																																																						14
TGG	-	-	3	2																																																																									5
TGT	-	-	4	2	3	3																																																																							12
TTA	-	-	8	6	4	1		1																																																																					20
TTC	-	-	9	3	2		1	2	2	3				1		1							3																																																						27
TTG	-	-	1	4																																																																									5
AAAC	-	1																																																																											1
AAAG	-	15	9	2	2			1																																																																					29
AAAT	-	15	2	1		1																																																																							19
AAGA	-	4	1																																																																										5
AATA	-	3		1																																																																									4
AATC	-	3	1	1																																																																									5
AATG	-	1		1																																																																									2
AATT	-	6	1	1																																																																									8
ACAT	-	4	1																																																																										5
ACCA	-	1																																																																											1
ACCG	-	1																																																																											1
AGAA	-	3	2	1	1																																																																								7
AGAT	-		1																																																																										1
AGCA	-	1																																																																											1
AGCT	-	1																																																																											1
AGGA	-	1																																																																											1
AGTG	-	1																																																																											1
ATAA	-	1				1																																																																							2
ATAC	-	2	1																																																																										3
ATCA	-	4	1																																																																										5
ATGA	-	2																																																																											2
ATGT	-	3	2		2																																																																								7
ATTA	-	1																																																																											1
ATTC	-		1																																																																										1
ATTT	-	5	1																																																																										6
CAAA	-	1																																																																											1
CAAG	-	1																																																																											1
CAAT	-		2																																																																										2
CACT	-	1																																																																											1
CATA	-	1		1																																																																									2
CATC	-	2																																																																											2
CCAT	-	1																																																																											1
CCCT	-	2																																																																											2
CCGT	-		1																																																																										1
CCTA	-	2																																																																											2
CTAC	-	1																																																																											1
CTAT	-	2	2																																																																										4
CTCA	-	2																																																																											2
CTCC	-	1																																																																											1
CTGC	-	1																																																																											1
CTTC	-	1																																																																											1
CTTT	-	4	2	2																																																																									8
GAAA	-	6	2	2		1						1																																																																	12
GAAG	-	1																																																																											1
GAAT	-	1																																																																											1
GACT	-	1																																																																											1
GAGC	-	1																																																																											1
GAGT	-			1																																																																									1
GATA	-	1																																																																											1
GATT	-	1			1																																																																								2
GGAA	-		1																																																																										1
GGAT	-	1																																																																											1
GGGA	-	1																																																																											1
GGTA	-			1																																																																									1
GTAA	-	1																																																																											1
GTAG	-	1																																																																											1
GTAT	-	4	1			1																																																																							6
TAAA	-	5		1																																																																									6
TAAC	-	1																																																																											1
TAAT	-				1																																																																								1
TACA	-	8	2	2	1																																																																								13
TAGG	-									1																																																																			1
TAGT	-	2																																																																											2
TATC	-	1				1																																																																							2
TATG	-	5		2		1				1																																																																			9
TATT	-	4					1																																																																						5
TCAA	-			2																																																																									2
TCAC	-	3																																																																											3
TCAT	-	1		1																																																																									2
TCCA	-	1	1																																																																										2
TCCG	-		1																																																																										1
TCCT	-	1																																																																											1
TCTA	-	2	1																																																																										3
TCTG	-	1		1																																																																									2
TCTT	-	7	3	1	1				1																																																																				13
TGAA	-	1																																																																											1
TGAC	-	2																																																																											2
TGAG	-	1																																																																											1
TGAT	-	4	1																																																																										5
TGCA	-	1																																																																											1
TGTA	-	5	2	1	1																																																																								9
TTAA	-	1																																																																											1
TTAT	-	5	1																																																																										6
TTCA	-	1																																																																											1
TTCT	-	4	1																																																																										5
TTGA	-	4	1		1																																																																								6
TTTA	-	7	4	1		1																																																																							13
TTTC	-	18	7	5	2	1		1	1						1																																																														36
AAAAC	5																																																																												5
AAAAG	49	18	5	1				1																																																																					74
AAAAT	28	11	1	1	1	1																																																																							43
AAACA	1	1																																																																											2
AAACC	1																																																																												1
AAAGA	9	1																																																																											10
AAAGG	3																																																																												3
AAAGT	1																																																																												1
AAATA	9	2																																																																											11
AAATC	2		1																																																																										3
AAATT	4																																																																												4
AACAA	1																																																																												1
AACAC	1																																																																												1
AACTA	1																																																																												1
AAGAA	13	3																																																																											16
AAGAC	2																																																																												2
AAGAG			1																																																																										1
AAGGA	2																																																																												2
AAGGG	1																																																																												1
AAGTA	1																																																																												1
AAGTC	1																																																																												1
AATAA	6																																																																												6
AATAC	1																																																																												1
AATAT	2	1																																																																											3
AATCC	2																																																																												2
AATGA	1																																																																												1
AATGC		1																																																																											1
AATGG		1																																																																											1
AATTC	2																																																																												2
ACAAA	1																																																																												1
ACAAC	1																																																																												1
ACACG			1																																																																										1
ACAGC	1																																																																												1
ACATC	1																																																																												1
ACCAG		1																																																																											1
ACCCA	1																																																																												1
ACCCT		1																																																																											1
ACCTA	1																																																																												1
ACGCA	1																																																																												1
ACTAG	1																																																																												1
ACTAT	1																																																																												1
ACTGG		1																																																																											1
ACTGT	1																																																																												1
ACTTG	1																																																																												1
AGAAA	13	2																																																																											15
AGAAG	3																																																																												3
AGACA	2																																																																												2
AGACT	1	1																																																																											2
AGAGA	3																																																																												3
AGATG	1																																																																												1
AGATT	1																																																																												1
AGCAA		1																																																																											1
AGCCA	1																																																																												1
AGCCC	1																																																																												1
AGCCG	1																																																																												1
AGCTA	1																																																																												1
AGCTG	1																																																																												1
AGGAA	2																																																																												2
AGGCG	1																																																																												1
AGGGA	2																																																																												2
AGGGC	1																																																																												1
AGGGG	1																																																																												1
AGTAC	2																																																																												2
AGTAG	1																																																																												1
AGTAT	1																																																																												1
AGTGT		1																																																																											1
ATAAA	7	1																																																																											8
ATACC	1																																																																												1
ATAGA		1																																																																											1
ATAGG	2																																																																												2
ATATA	2																																																																												2
ATATG	1																																																																												1
ATATT	2																																																																												2
ATCAC	1																																																																												1
ATCAT	1																																																																												1
ATCCA	1																																																																												1
ATCCC	2																																																																												2
ATCCT	1																																																																												1
ATGAT	3																																																																												3
ATGGG	1	1																																																																											2
ATGTG	1																																																																												1
ATTAA	2																																																																												2
ATTAT	1																																																																												1
ATTCA	1																																																																												1
ATTGC	1																																																																												1
ATTTA	1																																																																												1
ATTTC	2																																																																												2
ATTTG	2																																																																												2
ATTTT	3	1	1																																																																										5
CAAAA	1																																																																												1
CAAAT	1																																																																												1
CAACC	1																																																																												1
CAAGT	1																																																																												1
CAATT	1																																																																												1
CACCC	1																																																																												1
CACTT	1																																																																												1
CAGTA	1																																																																												1
CATAG	1																																																																												1
CATCT	1	1																																																																											2
CATGT	2																																																																												2
CATTT	1																																																																												1
CCAAA	1																																																																												1
CCACA	1																																																																												1
CCCGA	1																																																																												1
CCCGT		1																																																																											1
CCCTC	2																																																																												2
CCCTT	2																																																																												2
CCGTG	1																																																																												1
CCTAA		1																																																																											1
CCTCA	1																																																																												1
CCTCC	1																																																																												1
CCTCT	2																																																																												2
CCTTC	1																																																																												1
CCTTT	2																																																																												2
CGACA	1																																																																												1
CGACT		1																																																																											1
CGTCT	1																																																																												1
CGTTG	1																																																																												1
CTAGT	1																																																																												1
CTCAG	1																																																																												1
CTCAT	2																																																																												2
CTCTC			1																																																																										1
CTCTT	1																																																																												1
CTGAA	1																																																																												1
CTGAT		1																																																																											1
CTGTA	1																																																																												1
CTGTC	1																																																																												1
CTTCC		1																																																																											1
CTTCT	1																																																																												1
CTTTC	1																																																																												1
CTTTG	3																																																																												3
CTTTT	15	2																																																																											17
GAAAA	15	4																																																																											19
GAAAG	2																																																																												2
GAAAT	1		1																																																																										2
GAACC	2																																																																												2
GAAGA	1																																																																												1
GAATG	1																																																																												1
GAATT	1																																																																												1
GACAA	1																																																																												1
GACGG	1																																																																												1
GACTA	1																																																																												1
GAGAA	2																																																																												2
GAGAC		1																																																																											1
GAGAT	1	1																																																																											2
GAGCA	1																																																																												1
GAGGA	1																																																																												1
GAGGC	1																																																																												1
GAGGG	2	1																																																																											3
GATGC	1																																																																												1
GATTG	1																																																																												1
GCGTG	1																																																																												1
GCTCA	1																																																																												1
GCTGA	2																																																																												2
GCTTT	1																																																																												1
GGAAA	3																																																																												3
GGAAG	2																																																																												2
GGAAT	1																																																																												1
GGACC	1																																																																												1
GGAGA	2																																																																												2
GGAGC	1																																																																												1
GGATA	1																																																																												1
GGCTC	1																																																																												1
GGCTG	1																																																																												1
GGGAA	1																																																																												1
GGGAC	1																																																																												1
GGGAT	1																																																																												1
GGGGA	1																																																																												1
GGGTG	1																																																																												1
GGGTT	1																																																																												1
GGTAG	1																																																																												1
GGTAT	2																																																																												2
GGTGT	1																																																																												1
GGTTT	1																																																																												1
GTACA	1																																																																												1
GTATG	2																																																																												2
GTATT	1																																																																												1
GTCCT	1																																																																												1
GTCTC	1																																																																												1
GTCTG	1																																																																												1
GTTGA	1																																																																												1
GTTGG	3																																																																												3
GTTGT	2																																																																												2
GTTTA	1																																																																												1
GTTTT	1																																																																												1
TAAAA	7																																																																												7
TAAAT	2																																																																												2
TAACC	1																																																																												1
TAATT	2																																																																												2
TACAA	1																																																																												1
TACAC	1																																																																												1
TACAT	1		1																																																																										2
TACCA	1																																																																												1
TACCG		1																																																																											1
TACGG	3																																																																												3
TAGAT	1																																																																												1
TAGCA	1																																																																												1
TAGTA	1																																																																												1
TAGTT	2																																																																												2
TATAA	2																																																																												2
TATAC	1																																																																												1
TATAT	2																																																																												2
TATCA	2																																																																												2
TATCC		1																																																																											1
TATCG	1																																																																												1
TATGG	1																																																																												1
TATTG	1																																																																												1
TATTT	9		2																																																																										11
TCAGC	1																																																																												1
TCATC	2	1																																																																											3
TCATT	1	1																																																																											2
TCCAA	1																																																																												1
TCCCC	1																																																																												1
TCCTA	1																																																																												1
TCCTC	2																																																																												2
TCCTG	1																																																																												1
TCGCC		1																																																																											1
TCGGT	1																																																																												1
TCGTT		1																																																																											1
TCTAT	1																																																																												1
TCTCT	1	1																																																																											2
TCTTA	1																																																																												1
TCTTC	2																																																																												2
TCTTT	11	3	2					1																																																																					17
TGAAA	1																																																																												1
TGACA	1	1																																																																											2
TGAGA	1																																																																												1
TGATC		1																																																																											1
TGATT	2		1																																																																										3
TGCAT	1	1																																																																											2
TGGAG	1																																																																												1
TGGGA	1																																																																												1
TGGGT	1																																																																												1
TGTAC	4																																																																												4
TGTGA	1																																																																												1
TGTTA	1																																																																												1
TGTTC		1																																																																											1
TGTTG	1																																																																												1
TGTTT	1																																																																												1
TTAAA	2																																																																												2
TTAAT	7																																																																												7
TTAGT	1																																																																												1
TTATA	1																																																																												1
TTATT	8	3																																																																											11
TTCAT	2																																																																												2
TTCCC	2																																																																												2
TTCCT	2																																																																												2
TTCTC	1																																																																												1
TTCTT	12	6	1																																																																										19
TTGAA		1																																																																											1
TTGAC	1																																																																												1
TTGAG	1																																																																												1
TTGCA	2																																																																												2
TTGGG	1																																																																												1
TTGGT	1																																																																												1
TTTAG	1																																																																												1
TTTAT	9	3																																																																											12
TTTCA	1																																																																												1
TTTCC	9																																																																												9
TTTCG	1																																																																												1
TTTCT	18	5	1			1																																																																							25
TTTGA	1																																																																												1
TTTGG	1																																																																												1
TTTGT	1																																																																												1
TTTTA	19	2	4																																																																										25
TTTTC	50	15	7	4																																																																									76
TTTTG	3	2																																																																											5
AAAAAC	2																																																																												2
AAAAAG	17	4	3	1						1																																																																			26
AAAAAT	16	3																																																																											19
AAAACA		1																																																																											1
AAAAGA	5	4																																																																											9
AAAAGC	1																																																																												1
AAAAGG		1																																																																											1
AAAATA	10																																																																												10
AAAATG	1	1																																																																											2
AAAATT	1																																																																												1
AAACAG		1																																																																											1
AAACTA	1																																																																												1
AAAGAA	7																																																																												7
AAAGAC	1																																																																												1
AAAGAG	1																																																																												1
AAAGCA	1																																																																												1
AAAGGA	1																																																																												1
AAAGGG		1																																																																											1
AAAGTG	1																																																																												1
AAATAA	5																																																																												5
AAATCT	1																																																																												1
AAATGA	1																																																																												1
AAATTG	1																																																																												1
AACACC	1																																																																												1
AACCCA	1																																																																												1
AACCTC	1																																																																												1
AACGCC			1																																																																										1
AAGAAA	5																																																																												5
AAGAAC	2																																																																												2
AAGGGA	1																																																																												1
AATAAA	2																																																																												2
AATAAC	1																																																																												1
AATGAA	1																																																																												1
AATGAG	1																																																																												1
AATGTA		1																																																																											1
AATTAA	2																																																																												2
AATTAT	1																																																																												1
AATTTT	1																																																																												1
ACAACC	1																																																																												1
ACAACG	1																																																																												1
ACAAGA		1																																																																											1
ACAATC	1																																																																												1
ACCACT	1																																																																												1
ACCAGC	1																																																																												1
ACCATC	1																																																																												1
ACCCAA	1																																																																												1
AGAAAA	2	3																																																																											5
AGAAAG											1																																																																		1
AGACAA	1																																																																												1
AGACAC	1																																																																												1
AGACGG	1																																																																												1
AGACGT	1																																																																												1
AGAGAA	2																																																																												2
AGAGCG	1																																																																												1
AGCCGC	1																																																																												1
AGCTCT	1	1																																																																											2
AGGAAA	1																																																																												1
AGGCGG	1																																																																												1
AGTAGA	1																																																																												1
AGTAGC	1																																																																												1
AGTCCA	1																																																																												1
ATAAAA	2																																																																												2
ATAAAG	1																																																																												1
ATAAAT	1																																																																												1
ATAATC	1																																																																												1
ATAGTC	1																																																																												1
ATATAC	2																																																																												2
ATATTA	1																																																																												1
ATCATA	1																																																																												1
ATCCAT		1																																																																											1
ATCCCA	1		1																																																																										2
ATCCCC	1																																																																												1
ATCCTC	2																																																																												2
ATCGCC	1																																																																												1
ATCGTG	1																																																																												1
ATGACC	1																																																																												1
ATGCCA	1																																																																												1
ATGGAA	1																																																																												1
ATGTAC	1																																																																												1
ATGTCT	1																																																																												1
ATTAAT	1																																																																												1
ATTATA	1																																																																												1
ATTCTC	1																																																																												1
ATTTAA	1																																																																												1
ATTTTT	3	1																																																																											4
CAAGAA	1																																																																												1
CAATCC	1																																																																												1
CACACC		1																																																																											1
CACCAA	1																																																																												1
CACCAG		1																																																																											1
CACGGC	1																																																																												1
CACTGC	1																																																																												1
CAGAAG	1																																																																												1
CAGCAA	2																																																																												2
CAGCAT	1																																																																												1
CAGCCC		1																																																																											1
CAGCCG	1																																																																												1
CAGCTC	1																																																																												1
CAGGAA	1																																																																												1
CAGGCC	1																																																																												1
CATACA	1																																																																												1
CATACT	1																																																																												1
CATCAC		1																																																																											1
CATCAG	1																																																																												1
CATCCT	1																																																																												1
CATCGT	1																																																																												1
CATGGA	1																																																																												1
CATGTG	1																																																																												1
CATTTT	1																																																																												1
CCACAA	1																																																																												1
CCACCT		1																																																																											1
CCACTG	1																																																																												1
CCACTT	1																																																																												1
CCAGCT	1																																																																												1
CCATAA	1																																																																												1
CCATTA	1																																																																												1
CCATTC	1																																																																												1
CCCACT	1																																																																												1
CCCCAA	1																																																																												1
CCCCCT	1																																																																												1
CCGAAC	2																																																																												2
CCGAGA			1																																																																										1
CCGATG	1																																																																												1
CCGCGC	1																																																																												1
CCGGCT	1																																																																												1
CCGTGG	2																																																																												2
CCTCTC	1	1																																																																											2
CCTCTG	1	1																																																																											2
CCTCTT	2																																																																												2
CCTGCA	1																																																																												1
CCTGCG		1																																																																											1
CCTTGC	1																																																																												1
CCTTTT	1																																																																												1
CGAAGC	1																																																																												1
CGACCT	1																																																																												1
CGATCA	1																																																																												1
CGATCC	1																																																																												1
CGATGA	1																																																																												1
CGCAGC	1	1																																																																											2
CGCCTC	1																																																																												1
CGTCCT	1																																																																												1
CTAATT	1																																																																												1
CTACCA	1																																																																												1
CTATCG		1																																																																											1
CTCACT	1																																																																												1
CTCAGA	1																																																																												1
CTCATC	3																																																																												3
CTCCCG	1																																																																												1
CTCTTT		1																																																																											1
CTGATA	1																																																																												1
CTGCTA	1																																																																												1
CTGCTC	1																																																																												1
CTGGCT	2																																																																												2
CTGTTG	1																																																																												1
CTTCGT	1																																																																												1
CTTCTC	1	1																																																																											2
CTTTTA	1																																																																												1
CTTTTC	1																																																																												1
CTTTTT	2																																																																												2
GAAAAA	5	1		1																																																																									7
GAAAAG	2																																																																												2
GAAAAT	2																																																																												2
GAAAGG	1																																																																												1
GAAATG	1																																																																												1
GAACCT	1																																																																												1
GAAGAC	1																																																																												1
GAAGAG	3																																																																												3
GAAGGA		1																																																																											1
GAATTG	1																																																																												1
GACAAC	2																																																																												2
GACAGC	1																																																																												1
GACAGG	1																																																																												1
GACGAA	1																																																																												1
GACGAG	1																																																																												1
GACGCA	1																																																																												1
GAGAAA	1																																																																												1
GAGAGC	1																																																																												1
GAGCAG	1																																																																												1
GAGGAA	3																																																																												3
GAGGAT	1	2																																																																											3
GAGGGA		1																																																																											1
GAGTCG	1																																																																												1
GATAGG	1																																																																												1
GATATC	1																																																																												1
GATGAA	1																																																																												1
GATGAC	2																																																																												2
GATGTT	1																																																																												1
GATTAT	1																																																																												1
GCAACA	1																																																																												1
GCAATG	1																																																																												1
GCAGCC	1																																																																												1
GCAGGA		1																																																																											1
GCATCA	1																																																																												1
GCATCG	1																																																																												1
GCCATC	1																																																																												1
GCCGCT		1																																																																											1
GCCTGA	2																																																																												2
GCGCCT	1																																																																												1
GCGCTC	1																																																																												1
GCGGCA		1																																																																											1
GCGTCA	1																																																																												1
GCTCAG	1																																																																												1
GCTCCC	1																																																																												1
GCTGAC	1																																																																												1
GCTGCA	1																																																																												1
GGAAGC	1																																																																												1
GGACAG	1																																																																												1
GGACGC	1																																																																												1
GGAGAC	1																																																																												1
GGAGAG	1																																																																												1
GGAGCT	1																																																																												1
GGAGGG	1																																																																												1
GGCACC		1																																																																											1
GGCGGA	1																																																																												1
GGCGGT	1																																																																												1
GGCTCC	1																																																																												1
GGCTCG	1	1																																																																											2
GGCTCT	1																																																																												1
GGCTGC	1																																																																												1
GGGACC		1																																																																											1
GGGTTG	2																																																																												2
GGTCTT	1																																																																												1
GGTGAG	1																																																																												1
GGTGGC	2																																																																												2
GTACAT		1																																																																											1
GTAGTC	1																																																																												1
GTAGTG				1																																																																									1
GTATAG	1																																																																												1
GTCAAA	1																																																																												1
GTCATC						1																																																																							1
GTCCAT	1																																																																												1
GTCCTT	1																																																																												1
GTCGCA	1																																																																												1
GTGCTC	1																																																																												1
GTGGTC	1																																																																												1
GTGGTT	1																																																																												1
GTGTAT	1																																																																												1
GTGTGC	1																																																																												1
GTTCAT	1																																																																												1
GTTGAA	1																																																																												1
GTTGAC	1																																																																												1
GTTTTT	1																																																																												1
TAAAAA	2	2																																																																											4
TAAAAT	1																																																																												1
TAATTG	1																																																																												1
TACTAT	1																																																																												1
TAGGTA	1																																																																												1
TAGTGG											1																																																																		1
TATAAT	1																																																																												1
TATAGT	1																																																																												1
TATTTT	3	1																																																																											4
TCACAT	1																																																																												1
TCAGCC	1																																																																												1
TCAGGA	1																																																																												1
TCAGGC	1																																																																												1
TCAGGT	1																																																																												1
TCATCC		1																																																																											1
TCATCG	2																																																																												2
TCATTC	1																																																																												1
TCCAGC	1																																																																												1
TCCATG	1																																																																												1
TCCCTC	2																																																																												2
TCCTCA		1																																																																											1
TCCTCG	1																																																																												1
TCGCAA	1																																																																												1
TCGCAG	1																																																																												1
TCGGCT		1																																																																											1
TCGGGA	1																																																																												1
TCGTCA	1		1																																																																										2
TCGTCC		1																																																																											1
TCTACT		1																																																																											1
TCTCGA	1																																																																												1
TCTGCA	1																																																																												1
TCTGGC	1																																																																												1
TCTTCA		1																																																																											1
TCTTCC	2																																																																												2
TCTTCG	1																																																																												1
TCTTTA	1																																																																												1
TCTTTC	2																																																																												2
TCTTTT	4	1																																																																											5
TGAAAC	1																																																																												1
TGAAGA	1																																																																												1
TGAATG	1																																																																												1
TGACCC	1																																																																												1
TGACGA	1																																																																												1
TGAGCG	1																																																																												1
TGATGC	1																																																																												1
TGATGT	2																																																																												2
TGCAAC	1																																																																												1
TGCATA	1																																																																												1
TGCCAC		1																																																																											1
TGCCCT	1																																																																												1
TGCGCT	1																																																																												1
TGCGGC	1																																																																												1
TGCGGT	1																																																																												1
TGCTGT	1			1																																																																									2
TGCTTC	1																																																																												1
TGCTTT	1																																																																												1
TGGAGC	1																																																																												1
TGGCTA	1																																																																												1
TGGGGT	1																																																																												1
TGGGTT	2																																																																												2
TGGTGA	2																																																																												2
TGGTGT	1																																																																												1
TGTAGT	1																																																																												1
TGTCCT	1																																																																												1
TGTGAC	1																																																																												1
TGTTGA	1																																																																												1
TGTTGC	1																																																																												1
TGTTTT	1																																																																												1
TTAATA	1																																																																												1
TTAATT	1																																																																												1
TTACTA	1																																																																												1
TTAGAT	1																																																																												1
TTATGA	1																																																																												1
TTATTT	3																																																																												3
TTCAAC	1																																																																												1
TTCCTC		1																																																																											1
TTCGCC	1																																																																												1
TTCTTA	1																																																																												1
TTCTTG	1																																																																												1
TTCTTT	1	2																																																																											3
TTGATG							1																																																																						1
TTGCCA		1																																																																											1
TTGGGG	1																																																																												1
TTGGGT	1																																																																												1
TTGTAG	1																																																																												1
TTGTGT	1																																																																												1
TTTACC	1																																																																												1
TTTATT	4	1	1																																																																										6
TTTCAT	1																																																																												1
TTTCCC		1																																																																											1
TTTCCG	1																																																																												1
TTTCTA	1																																																																												1
TTTCTC	2																																																																												2
TTTCTT	11	1																																																																											12
TTTTAC	1																																																																												1
TTTTAT	3	2	1																																																																										6
TTTTCA	1																																																																												1
TTTTCC	1																																																																												1
TTTTCT	8	1	1																																																																										10
TTTTGA		1																																																																											1
TTTTGC	1	1																																																																											2
TTTTGG	1		1																																																																										2
TTTTTA	8	2	1																																																																										11
TTTTTC	17	2	2	1																																																																									22

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	40	37	30	32	38	29	25	25	22	12	7	10	7	8	2	8	2	4	5	6	6	4	5	2	3	2		2	2	3	2	3	2	3	2	2	1	1	3	1	1	1		1		2	4	2	1	2		5	6	6	12	11	7	10		469
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	8	12	6	2	6	4	4	1	5	2			1	3	2	2	2	1		2	1	1		1		2	2	1	1	1	1			1	1	1	1	1					1	2	1				1		1			1	1	2		1	98
AC/GT	-	-	-	43	13	9	5	5	6	3	4	1	1	2	1	4	2			3	2			1		1								1		2																																									109
AG/CT	-	-	-	96	50	36	26	13	14	7	3	3	4	7	2	1	1	2	1	2		1				1																																																			270
AT/AT	-	-	-	132	52	19	15	11	4	10	6	3	1	1																																																															254
CG/CG	-	-	-	2		1																																																																							3
AAC/GTT	-	-	20	12	6	4	1	2		1		1																																																																	47
AAG/CTT	-	-	56	21	9	5	3	7	3	5	1	1		2		1	2						6																																																						122
AAT/ATT	-	-	43	22	9	4	2	3	1	1	1	1	1			1							2									1																																													92
ACC/GGT	-	-	19	7	1	1	1	2	1																																																																				32
ACG/CGT	-	-	11		2	1																																																																							14
ACT/AGT	-	-	13	2	6	1		3		1	2			1	1						1		3												1																																										35
AGC/CTG	-	-	21	12	6	6	2																																																																						47
AGG/CCT	-	-	15	7	3	3	1	2	2								1		1																																																										35
ATC/ATG	-	-	27	7	5	2	1			2																																																																			44
CCG/CGG	-	-	22	7	1	1																																																																							31
AAAC/GTTT	-	2																																																																											2
AAAG/CTTT	-	61	27	13	6	2		2	2			1			1																																																														115
AAAT/ATTT	-	45	8	4		3	1																																																																						61
AACC/GGTT	-	1																																																																											1
AACT/AGTT	-	3																																																																											3
AAGC/CTTG	-	2																																																																											2
AAGG/CCTT	-	4	1																																																																										5
AAGT/ACTT	-	1																																																																											1
AATC/ATTG	-	16	6	3	2																																																																								27
AATG/ATTC	-	7	1	2																																																																									10
AATT/AATT	-	8	1	1	1																																																																								11
ACAG/CTGT	-	1		1																																																																									2
ACAT/ATGT	-	32	9	6	4	2				1																																																																			54
ACCG/CGGT	-	1																																																																											1
ACCT/AGGT	-	4		1						1																																																																			6
ACGG/CCGT	-		2																																																																										2
ACTC/AGTG	-	8		1																																																																									9
ACTG/AGTC	-	3																																																																											3
AGAT/ATCT	-	6	4			1																																																																							11
AGCG/CGCT	-	1																																																																											1
AGCT/AGCT	-	1																																																																											1
AGGC/CCTG	-	1																																																																											1
AGGG/CCCT	-	4																																																																											4
ATCC/ATGG	-	5	1																																																																										6
ATGC/ATGC	-	1																																																																											1
AAAAC/GTTTT	15	3																																																																											18
AAAAG/CTTTT	205	59	16	5		1		2																																																																					288
AAAAT/ATTTT	105	23	8	1	1	1																																																																							139
AAACC/GGTTT	5																																																																												5
AAACG/CGTTT	1	1																																																																											2
AAACT/AGTTT	6																																																																												6
AAAGC/CTTTG	4	1																																																																											5
AAAGG/CCTTT	26																																																																												26
AAAGT/ACTTT	2																																																																												2
AAATC/ATTTG	8		2																																																																										10
AAATG/ATTTC	10	1	1																																																																										12
AAATT/AATTT	20																																																																												20
AACAC/GTGTT	5																																																																												5
AACAG/CTGTT		1																																																																											1
AACAT/ATGTT	1																																																																												1
AACCC/GGGTT	8																																																																												8
AACCG/CGGTT	3																																																																												3
AACCT/AGGTT	2	1																																																																											3
AACGC/CGTTG	2																																																																												2
AACTC/AGTTG	2																																																																												2
AACTG/AGTTC	1																																																																												1
AAGAC/CTTGT	5																																																																												5
AAGAG/CTCTT	15	1	1																																																																										17
AAGAT/ATCTT	1																																																																												1
AAGCC/CTTGG	1																																																																												1
AAGCT/AGCTT	1																																																																												1
AAGGG/CCCTT	11	1																																																																											12
AAGTC/ACTTG	4																																																																												4
AAGTG/ACTTC	1																																																																												1
AATAC/ATTGT	4																																																																												4
AATAG/ATTCT	1	1																																																																											2
AATAT/ATATT	12	1																																																																											13
AATCC/ATTGG	5																																																																												5
AATCT/AGATT	2																																																																												2
AATGC/ATTGC	4	2																																																																											6
AATGG/ATTCC	2	1																																																																											3
AATGT/ACATT	1		1																																																																										2
AATTC/AATTG	5	1																																																																											6
ACACC/GGTGT	2																																																																												2
ACACG/CGTGT	1		1																																																																										2
ACACT/AGTGT	1	1																																																																											2
ACAGC/CTGTG	1																																																																												1
ACAGG/CCTGT	3																																																																												3
ACAGT/ACTGT	10																																																																												10
ACATC/ATGTG	4																																																																												4
ACATG/ATGTC	3	1																																																																											4
ACCAG/CTGGT	1	1																																																																											2
ACCAT/ATGGT	7																																																																												7
ACCCC/GGGGT	2																																																																												2
ACCCG/CGGGT	1																																																																												1
ACCCT/AGGGT	1	1																																																																											2
ACCGG/CCGGT	1																																																																												1
ACCGT/ACGGT	3	1																																																																											4
ACCTC/AGGTG	1																																																																												1
ACGAG/CGTCT	2	1																																																																											3
ACGAT/ATCGT	1																																																																												1
ACGCC/CGTGG	1																																																																												1
ACGGC/CCGTG	1																																																																												1
ACGGG/CCCGT	2	1																																																																											3
ACTAG/AGTCT	4	1																																																																											5
ACTAT/AGTAT	4																																																																												4
ACTCC/AGTGG	1																																																																												1
ACTCG/AGTCG		1																																																																											1
ACTCT/AGAGT	1																																																																												1
ACTGG/AGTCC		1																																																																											1
AGAGC/CTCTG	1																																																																												1
AGAGG/CCTCT	7		1																																																																										8
AGATC/ATCTG		2																																																																											2
AGATG/ATCTC	8	3																																																																											11
AGCAT/ATGCT	2																																																																												2
AGCCC/CTGGG	2																																																																												2
AGCCG/CGGCT	2																																																																												2
AGCGG/CCGCT	1																																																																												1
AGCTC/AGCTG	6																																																																												6
AGGAT/ATCCT	5	1																																																																											6
AGGCG/CCTCG	2	1																																																																											3
AGGGC/CCCTG	1																																																																												1
AGGGG/CCCCT	8	1																																																																											9
ATATC/ATATG	7																																																																												7
ATCCC/ATGGG	5	1																																																																											6
ATCGC/ATGCG	1																																																																												1
AAAAAC/GTTTTT	4	1																																																																											5
AAAAAG/CTTTTT	84	19	6	3						1																																																																			113
AAAAAT/ATTTTT	61	12	3																																																																										76
AAAACC/GGTTTT	1		1																																																																										2
AAAACT/AGTTTT	1																																																																												1
AAAAGC/CTTTTG	4	1																																																																											5
AAAAGG/CCTTTT	7	1																																																																											8
AAAAGT/ACTTTT	2																																																																												2
AAAATC/ATTTTG		1																																																																											1
AAAATG/ATTTTC	8	1																																																																											9
AAAATT/AATTTT	6																																																																												6
AAACAC/GTGTTT	1																																																																												1
AAACAG/CTGTTT		1																																																																											1
AAACCC/GGGTTT	5																																																																												5
AAACGG/CCGTTT	1																																																																												1
AAACTG/AGTTTC	1																																																																												1
AAAGAC/CTTTGT	2																																																																												2
AAAGAG/CTCTTT	8	1									1																																																																		10
AAAGAT/ATCTTT	2																																																																												2
AAAGGG/CCCTTT	2	2																																																																											4
AAAGGT/ACCTTT	1																																																																												1
AAAGTC/ACTTTG	1																																																																												1
AAAGTG/ACTTTC	1																																																																												1
AAATAG/ATTTCT	1																																																																												1
AAATAT/ATATTT	1																																																																												1
AAATCT/AGATTT	2																																																																												2
AAATGG/ATTTCC	2																																																																												2
AAATGT/ACATTT		1																																																																											1
AAATTG/AATTTC	1																																																																												1
AAATTT/AAATTT	1																																																																												1
AACAAG/CTTGTT	4	1																																																																											5
AACAAT/ATTGTT	1																																																																												1
AACACC/GGTGTT	3																																																																												3
AACAGC/CTGTTG	6			1																																																																									7
AACAGG/CCTGTT	1																																																																												1
AACATC/ATGTTG	4						1																																																																						5
AACATG/ATGTTC	1																																																																												1
AACCAC/GGTTGT	3																																																																												3
AACCAT/ATGGTT	1																																																																												1
AACCCC/GGGGTT	5																																																																												5
AACCCG/CGGGTT	2																																																																												2
AACCGC/CGGTTG	1																																																																												1
AACCTC/AGGTTG	1																																																																												1
AACCTG/AGGTTC	2																																																																												2
AACGAC/CGTTGT	3																																																																												3
AACGCC/CGTTGG			1																																																																										1
AACGTC/ACGTTG	1																																																																												1
AACTAC/AGTTGT	2																																																																												2
AACTAT/AGTTAT	1																																																																												1
AACTGC/AGTTGC	1																																																																												1
AACTTC/AAGTTG	2																																																																												2
AAGAAT/ATTCTT	1																																																																												1
AAGACC/CTTGGT	1																																																																												1
AAGACG/CGTCTT	4																																																																												4
AAGAGG/CCTCTT	10	1																																																																											11
AAGATG/ATCTTC	2	1																																																																											3
AAGCAG/CTGCTT	2																																																																												2
AAGCCG/CGGCTT	1	1																																																																											2
AAGCGC/CGCTTG	1																																																																												1
AAGCGG/CCGCTT	1																																																																												1
AAGGAC/CCTTGT	2																																																																												2
AAGGAG/CCTTCT	1	2																																																																											3
AAGGCG/CCTTCG	1																																																																												1
AAGGGC/CCCTTG	2																																																																												2
AAGTAG/ACTTCT	1	1																																																																											2
AAGTCC/ACTTGG	1																																																																												1
AAGTGG/ACTTCC	1																																																																												1
AATAGT/ACTATT	2																																																																												2
AATATT/AATATT	3																																																																												3
AATCAC/ATTGTG	1																																																																												1
AATCAT/ATGATT	4																																																																												4
AATCCC/ATTGGG	2		1																																																																										3
AATCGC/ATTGCG	1																																																																												1
AATGAG/ATTCTC	3																																																																												3
AATGCC/ATTGGC	1																																																																												1
AATGGC/ATTGCC	1	1																																																																											2
AATGGG/ATTCCC	1																																																																												1
AATGGT/ACCATT	1																																																																												1
AATGTG/ACATTC	2																																																																												2
AATTAC/AATTGT	1																																																																												1
AATTAG/AATTCT	1																																																																												1
AATTAT/AATTAT	3																																																																												3
AATTCC/AATTGG	1																																																																												1
ACACAG/CTGTGT	1																																																																												1
ACACAT/ATGTGT	2																																																																												2
ACACCC/GGGTGT		1																																																																											1
ACACGC/CGTGTG	1																																																																												1
ACAGCG/CGCTGT	1																																																																												1
ACAGGG/CCCTGT	2																																																																												2
ACAGTC/ACTGTG	1																																																																												1
ACATAG/ATGTCT	1																																																																												1
ACATAT/ATATGT	2																																																																												2
ACATGC/ATGTGC	1																																																																												1
ACATGG/ATGTCC	3																																																																												3
ACATGT/ACATGT	1	1																																																																											2
ACCACG/CGTGGT	1																																																																												1
ACCACT/AGTGGT	2			1							1																																																																		4
ACCAGC/CTGGTG	1	1																																																																											2
ACCATC/ATGGTG	3	1																																																																											4
ACCATG/ATGGTC	1																																																																												1
ACCCTC/AGGGTG	1																																																																												1
ACCCTG/AGGGTC	1																																																																												1
ACCGAG/CGGTCT			1																																																																										1
ACCGCC/CGGTGG	3																																																																												3
ACCGGC/CCGGTG		1																																																																											1
ACCGGG/CCCGGT		1																																																																											1
ACCTAT/AGGTAT	2																																																																												2
ACCTCC/AGGTGG		1																																																																											1
ACCTCG/AGGTCG	1																																																																												1
ACCTGC/AGGTGC	1																																																																												1
ACGACT/AGTCGT	1																																																																												1
ACGAGC/CGTGCT	1																																																																												1
ACGAGG/CCTCGT	3	1																																																																											4
ACGATC/ATCGTG	2																																																																												2
ACGATG/ATCGTC	8		1			1																																																																							10
ACGCAG/CGTCTG	1																																																																												1
ACGCGG/CCGCGT	1																																																																												1
ACGCTC/AGCGTG	1																																																																												1
ACGCTG/AGCGTC	2																																																																												2
ACGGAG/CCGTCT	2																																																																												2
ACGGCC/CCGTGG	3																																																																												3
ACGTAG/ACGTCT	1																																																																												1
ACTATG/AGTCAT	1																																																																												1
ACTCAG/AGTCTG	1																																																																												1
ACTCAT/AGTATG	1																																																																												1
ACTCCC/AGTGGG	1																																																																												1
ACTCCG/AGTCGG	1																																																																												1
ACTCTC/AGAGTG	1																																																																												1
ACTGAT/AGTATC	1																																																																												1
ACTGCC/AGTGGC	2	1																																																																											3
ACTGCG/AGTCGC	2																																																																												2
ACTGCT/AGCAGT	2																																																																												2
AGAGCC/CTCTGG	4																																																																												4
AGAGCG/CGCTCT	2																																																																												2
AGAGCT/AGCTCT	1	1																																																																											2
AGAGGC/CCTCTG	1	1																																																																											2
AGAGGG/CCCTCT	4	2																																																																											6
AGATCG/ATCTCG	1																																																																												1
AGATGC/ATCTGC	1																																																																												1
AGCAGG/CCTGCT	2	1																																																																											3
AGCATC/ATGCTG	4																																																																												4
AGCCAT/ATGGCT	1																																																																												1
AGCCCC/CTGGGG		1																																																																											1
AGCCCG/CGGGCT	1	1																																																																											2
AGCCGC/CGGCTG	6	1																																																																											7
AGCCGG/CCGGCT	2																																																																												2
AGCCTC/AGGCTG	1																																																																												1
AGCCTG/AGGCTC	4																																																																												4
AGCGAT/ATCGCT		1																																																																											1
AGCGCG/CGCGCT	1																																																																												1
AGCGGC/CCGCTG		2																																																																											2
AGCGGG/CCCGCT	2																																																																												2
AGCTCC/AGCTGG	5																																																																												5
AGCTGC/AGCTGC	1																																																																												1
AGGATC/ATCCTG	1																																																																												1
AGGATG/ATCCTC	7	4																																																																											11
AGGCCC/CCTGGG	1																																																																												1
AGGCGC/CCTGCG	1	1																																																																											2
AGGCGG/CCGCCT	3																																																																												3
AGGGAT/ATCCCT	1																																																																												1
AGGGGG/CCCCCT	2																																																																												2
ATATCC/ATATGG		1																																																																											1
ATATCG/ATATCG	1																																																																												1
ATATGC/ATATGC	1																																																																												1
ATCCCC/ATGGGG	1																																																																												1
ATCCCG/ATCGGG	2																																																																												2
ATCGCC/ATGGCG	2																																																																												2
ATCGGC/ATGCCG	2																																																																												2
CCCGCG/CGCGGG	1																																																																												1
