Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_012241465.1/fasta/hub_GCA_012241465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4498
Total size of examined sequences (bp):           8002077
Total number of identified SSRs:                 35
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	1
5	8
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CT	-	-	-		1																		1
GC	-	-	-		1																		1
CTT	-	-	1																				1
CCGAC	1																						1
CGCAC	1																						1
GCCCC	1																						1
GCGGC	1																						1
GGAGG	1																						1
GTGGG	1																						1
TGCGA	1																						1
TTGAA	1																						1
AAAAGC	1																						1
ACAGCA	1																						1
AGGCCG	1																						1
ATTGGG				1																			1
CAAGGC	1																						1
CACCGC	1																						1
CCACCG	1																						1
CCGCCA	1																						1
CCTGCA							1																1
CTCCGA	1																						1
CTCGGC	1																						1
CTGCGC	1																						1
GAATGT	1																						1
GCCATC	1																						1
GCCCGA		1																					1
GCGCCG	1																						1
GCTCTG	1		1																				2
TGAAGC	1																						1
TGCGGA		1																					1
TTCTTT	1																						1
TTGAAG	1																						1
TTGGCT			1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
AG/CT	-	-	-		1																		1
CG/CG	-	-	-		1																		1
AAG/CTT	-	-	1																				1
AATTC/AATTG	1																						1
ACCCC/GGGGT	1																						1
ACCCG/CGGGT	1																						1
ACCGC/CGGTG	1																						1
AGGGG/CCCCT	1																						1
ATCGC/ATGCG	1																						1
CCCCG/CGGGG	1																						1
CCGCG/CGCGG	1																						1
AAAAAG/CTTTTT	1																						1
AAAAGC/CTTTTG	1																						1
AAAGCC/CTTTGG			1																				1
AACAGC/CTGTTG	1																						1
AACTTC/AAGTTG	1																						1
AAGCTG/AGCTTC	1																						1
AAGGCC/CCTTGG	1																						1
AATCCC/ATTGGG				1																			1
AATGTG/ACATTC	1																						1
ACCGCC/CGGTGG	3																						3
ACCTGC/AGGTGC							1																1
ACTCCG/AGTCGG	1																						1
AGAGCC/CTCTGG	1		1																				2
AGCCCG/CGGGCT		1																					1
AGGCCG/CCTCGG	2																						2
AGGCGC/CCTGCG	1																						1
ATCCGC/ATGCGG		1																					1
ATCGCC/ATGGCG	1																						1
CCGGCG/CCGGCG	1																						1
