Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-120/megassr/results/hub_GCA_011396255.1/fasta/hub_GCA_011396255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           4734924
Total number of identified SSRs:                 25
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	5
4	2
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT	-	-	-	1									1
CG	-	-	-	4									4
GC	-	-	-	1									1
AGC	-	-	1										1
CCG	-	-	1										1
CGG	-	-	1										1
CTG	-	-										1	1
GCC	-	-	1										1
GCCA	-	1											1
TCAA	-	1											1
AAAAT	1												1
ACGAT	1												1
CGCGC	1												1
CGCGG	1												1
GGCGC	1												1
AAGCCG	1												1
CCATGA					1								1
CGACTT	1												1
CTGGCG	1												1
CTGTTC	1												1
GCCAGC	1												1
GCCGGT	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AT/AT	-	-	-	1									1
CG/CG	-	-	-	5									5
AGC/CTG	-	-	1									1	2
CCG/CGG	-	-	3										3
AATC/ATTG	-	1											1
AGCC/CTGG	-	1											1
AAAAT/ATTTT	1												1
ACGAT/ATCGT	1												1
CCGCG/CGCGG	3												3
AACAGG/CCTGTT	1												1
AAGCCG/CGGCTT	1												1
AAGTCG/ACTTCG	1												1
ACCATG/ATGGTC					1								1
ACCGGC/CCGGTG	1												1
AGCGCC/CGCTGG	2												2
