Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCA_011105515.1/fasta/hub_GCA_011105515.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4758530
Total number of identified SSRs:                 26
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	1
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	2	2
GC	-	-	-	2	2
ATG	-	-	1		1
CCG	-	-	1		1
CGG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	2		2
GCT	-	-	1		1
GCCA	-	1			1
AGGGA	1				1
CGCGC	1				1
GCGCA	1				1
GGCGC	1				1
TATCG	1				1
ATGGTC	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
GCGCTG	1				1
GTGGTC		1			1
GTGGTT		1			1
TGCGCC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	4	4
AGC/CTG	-	-	1		1
ATC/ATG	-	-	1		1
CCG/CGG	-	-	5		5
AGCC/CTGG	-	1			1
AAGGG/CCCTT	1				1
ACGAT/ATCGT	1				1
AGCGC/CGCTG	1				1
CCGCG/CGCGG	2				2
AACCAC/GGTTGT		1			1
AAGTCG/ACTTCG	1				1
ACCACG/CGTGGT		1			1
ACCATG/ATGGTC	1				1
AGCGCC/CGCTGG	3				3
AGGCGC/CCTGCG	1				1
