Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCA_011104935.1/fasta/hub_GCA_011104935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4680487
Total number of identified SSRs:                 20
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4		4
GC	-	-	-	1	1	2
ATG	-	-	1			1
CTG	-	-		1		1
GCC	-	-	1			1
GCG	-	-	2			2
GCT	-	-	1			1
TGC	-	-	1			1
GCCA	-	1				1
CGCGC	1					1
GGCGC	1					1
CGACTT	1					1
CTGGCG	1					1
GCCAGC	1					1
GCGGAG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5	1	6
AGC/CTG	-	-	2	1		3
ATC/ATG	-	-	1			1
CCG/CGG	-	-	3			3
AGCC/CTGG	-	1				1
CCGCG/CGCGG	2					2
AAGTCG/ACTTCG	1					1
AGCGCC/CGCTGG	2					2
AGGCGG/CCGCCT	1					1
