Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-77/megassr/results/hub_GCA_011102795.1/fasta/hub_GCA_011102795.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              67
Total size of examined sequences (bp):           4664456
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3					3
GC	-	-	-	1	1				2
CCG	-	-	1						1
CGG	-	-	1						1
GCC	-	-	1						1
GCG	-	-	1						1
GCT	-	-	1						1
TAA	-	-	1						1
GCCA	-	1							1
AAAAT	1								1
CGCGC	1								1
GGCGC	1								1
CACGAC								1	1
CGACTT	1								1
CTGGCG	1								1
GACAAT	1								1
GCCAGC	1								1
GCGGCT	1								1
TAAAAA	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	4	1				5
AAT/ATT	-	-	1						1
AGC/CTG	-	-	1						1
CCG/CGG	-	-	4						4
AGCC/CTGG	-	1							1
AAAAT/ATTTT	1								1
CCGCG/CGCGG	2								2
AAAAAT/ATTTTT	1								1
AAGTCG/ACTTCG	1								1
AATGAC/ATTGTC	1								1
ACCACG/CGTGGT								1	1
AGCCGC/CGGCTG	1								1
AGCGCC/CGCTGG	2								2
