Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-37/megassr/results/hub_GCA_010759165.1/fasta/hub_GCA_010759165.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              26
Total size of examined sequences (bp):           4674903
Total number of identified SSRs:                 20
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	2							2
GC	-	-	-	2							2
CCG	-	-	1								1
CGG	-	-	1								1
GCC	-	-	1								1
GCG	-	-	2								2
GCT	-	-	1								1
GGC	-	-		1							1
AAAAT	1										1
CGCGC	1										1
CGCGG	1										1
GGCGC	1										1
CCGCTG	1										1
CGACTT	1										1
CGCCAG	1										1
GCCAGC	1										1
GCCAGT										1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	4							4
AGC/CTG	-	-	1								1
CCG/CGG	-	-	5	1							6
AAAAT/ATTTT	1										1
CCGCG/CGCGG	3										3
AAGTCG/ACTTCG	1										1
ACTGGC/AGTGCC										1	1
AGCGCC/CGCTGG	2										2
AGCGGC/CCGCTG	1										1
