Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-36/megassr/results/hub_GCA_010740095.1/fasta/hub_GCA_010740095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              58
Total size of examined sequences (bp):           4657092
Total number of identified SSRs:                 20
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	5
4	2
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	4					4
GC	-	-	-	2					2
AGC	-	-	1						1
CCG	-	-	2						2
GCG	-	-	1						1
TAA	-	-	1						1
GCCA	-	1							1
TAAA	-	1							1
CGCGC	1								1
CGCTG	1								1
GGCGC	1								1
ACCACG								1	1
CGACTT	1								1
CTGGCG	1								1
GCCAGC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6					6
AAT/ATT	-	-	1						1
AGC/CTG	-	-	1						1
CCG/CGG	-	-	3						3
AAAT/ATTT	-	1							1
AGCC/CTGG	-	1							1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	2								2
AAGTCG/ACTTCG	1								1
ACCACG/CGTGGT								1	1
AGCGCC/CGCTGG	2								2
