Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCA_010569705.1/fasta/hub_GCA_010569705.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4695627
Total number of identified SSRs:                 21
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	5
4	2
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
AGC	-	-	1								1
CGG	-	-	2								2
GCA	-	-	1								1
GCG	-	-	1								1
GCCA	-	1									1
TAAA	-	1									1
AAAAT	1										1
CAGCG	1										1
GCGCG	1										1
GGCGC	1										1
TCTGG	1										1
CACGAC										1	1
CGACTT	1										1
CTGGCG	1										1
GCCAGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	5							5
AGC/CTG	-	-	2								2
CCG/CGG	-	-	3								3
AAAT/ATTT	-	1									1
AGCC/CTGG	-	1									1
AAAAT/ATTTT	1										1
ACCAG/CTGGT	1										1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	2										2
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT										1	1
AGCGCC/CGCTGG	2										2
