Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-39/megassr/results/hub_GCA_010542825.1/fasta/hub_GCA_010542825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              131
Total size of examined sequences (bp):           4625919
Total number of identified SSRs:                 22
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	1
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	4						4
GC	-	-	-	1	1					2
ATG	-	-	1							1
CCG	-	-	1							1
CGG	-	-	1							1
GCA	-	-		1						1
GCG	-	-	1							1
GCT	-	-	1							1
TGC	-	-	1							1
GCCA	-	1								1
GCGCG	1									1
GGCGC	1									1
ACCACA	1									1
ACCACG		1							1	2
CGACTT	1									1
CTGGCG	1									1
GCCAGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5	1					6
AGC/CTG	-	-	2	1						3
ATC/ATG	-	-	1							1
CCG/CGG	-	-	3							3
AGCC/CTGG	-	1								1
CCGCG/CGCGG	2									2
AACCAC/GGTTGT	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT		1							1	2
AGCGCC/CGCTGG	2									2
