Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCA_010542145.1/fasta/hub_GCA_010542145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4879472
Total number of identified SSRs:                 22
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	10
4	1
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3			3
GC	-	-	-	1			1
CAT	-	-	1				1
CCG	-	-	2				2
CGC	-	-		1			1
GCA	-	-			1		1
GCC	-	-	1				1
GCG	-	-	2				2
GCT	-	-	1				1
TGG	-	-	1				1
GCCA	-	1					1
GCGCG	1						1
GGCGC	1						1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
GCCAGT						1	1
TGGTCG					1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	4			4
ACC/GGT	-	-	1				1
AGC/CTG	-	-	1		1		2
ATC/ATG	-	-	1				1
CCG/CGG	-	-	5	1			6
AGCC/CTGG	-	1					1
CCGCG/CGCGG	2						2
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT					1		1
ACTGGC/AGTGCC						1	1
AGCGCC/CGCTGG	2						2
