Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-62/megassr/results/hub_GCA_010504415.1/fasta/hub_GCA_010504415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              73
Total size of examined sequences (bp):           4902009
Total number of identified SSRs:                 22
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	2
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3					3
GC	-	-	-	2					2
CCG	-	-	1						1
CGC	-	-	1						1
CGG	-	-	1						1
CTG	-	-	1						1
GCC	-	-	1						1
GCG	-	-	1						1
GCT	-	-	1						1
GCCA	-	1							1
TATT	-	1							1
CGCGC	1								1
CGCTG	1								1
GGCGC	1								1
CAACCA	1								1
CGACTT	1								1
CTGGCG	1								1
GAACAG								1	1
GCCAGC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	5					5
AGC/CTG	-	-	2						2
CCG/CGG	-	-	5						5
AAAT/ATTT	-	1							1
AGCC/CTGG	-	1							1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	2								2
AACAGG/CCTGTT								1	1
AACCAC/GGTTGT	1								1
AAGTCG/ACTTCG	1								1
AGCGCC/CGCTGG	2								2
