Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCA_010398925.1/fasta/hub_GCA_010398925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              51
Total size of examined sequences (bp):           4877816
Total number of identified SSRs:                 27
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
4	1
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT	-	-	-	1							1
CG	-	-	-	4		1					5
GC	-	-	-	1							1
CCG	-	-	1	1							2
CGC	-	-	1								1
CGG	-	-	1								1
CTG	-	-								1	1
GCA	-	-	1								1
GCC	-	-	1								1
GCG	-	-	1								1
GCT	-	-	1								1
GCCA	-	1									1
CGCGC	1										1
GGCGC	1										1
AAGCGT	1										1
ACCACG							1				1
CGACTT	1										1
CTGGCG	1										1
CTTCCG					1						1
GCCAGC	1										1
TGAGTA		1									1
TTTTTA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	5		1					6
AGC/CTG	-	-	2							1	3
CCG/CGG	-	-	5	1							6
AGCC/CTGG	-	1									1
CCGCG/CGCGG	2										2
AAAAAT/ATTTTT	1										1
AAGCGG/CCGCTT					1						1
AAGCGT/ACGCTT	1										1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT							1				1
ACTCAT/AGTATG		1									1
AGCGCC/CGCTGG	2										2
