Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-98/megassr/results/hub_GCA_010392565.1/fasta/hub_GCA_010392565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              65
Total size of examined sequences (bp):           4792275
Total number of identified SSRs:                 19
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	4
4	2
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	5			5
GC	-	-	-	1			1
AGC	-	-	1				1
CTG	-	-				1	1
GCG	-	-	2				2
GCCA	-	1					1
TAAA	-	1					1
CGCGC	1						1
CGCTG	1						1
GGCGC	1						1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
GTCATT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	6			6
AGC/CTG	-	-	1			1	2
CCG/CGG	-	-	2				2
AAAT/ATTT	-	1					1
AGCC/CTGG	-	1					1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAGTCG/ACTTCG	1						1
AATGAC/ATTGTC	1						1
AGCGCC/CGCTGG	2						2
