Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_010065285.1/fasta/hub_GCA_010065285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           19078487
Total number of identified SSRs:                 1586
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  17
Number of SSRs present in compound formation:    122


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	63
2	306
3	407
4	127
5	161
6	522

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	7	3	3	2	4	3	2	2	5		1	1																																														36
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1																																																									2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		1	1			1																																																			4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2	2	1	2	1	2	1	1	3	1	1														1																																	21
AC	-	-	-	7	3	1	1																																																																					12
AG	-	-	-	15	3	1		1																																																																				20
AT	-	-	-	42	15	14	17	6	3	4	1		1			2		1					1																																																					107
CA	-	-	-	5		2	1																																																																					8
CT	-	-	-	24	2	3	1	1			1		1																																																															33
GA	-	-	-	12	5	2				1																																																																		20
GC	-	-	-	2																																																																								2
GT	-	-	-	4		1				1																																																																		6
TA	-	-	-	28	12	6	16	4	2	1		1	2	1																																																														73
TC	-	-	-	11	2	1		1																																																																				15
TG	-	-	-	7		3																																																																						10
AAC	-	-		1																																																																								1
AAG	-	-	13	2	2																																																																							17
AAT	-	-	2	1	1																																																																							4
ACA	-	-	3	1			1																																																																					5
ACC	-	-	4	2			1			1																																																																		8
ACT	-	-		1																																																																								1
AGA	-	-	12	4	1																																																																							17
AGC	-	-	7	5	1																																																																							13
AGG	-	-	6	4																																																																								10
ATA	-	-	3		2			1																																																																				6
ATC	-	-	2	3																																																																								5
ATG	-	-	5	1																																																																								6
ATT	-	-	1																																																																									1
CAA	-	-	6		1																																																																							7
CAC	-	-	2	1																																																																								3
CAG	-	-	4	3	1	3																																																																						11
CAT	-	-	7	2	1																																																																							10
CCA	-	-	6	3	1	1																					1																																																	12
CCG	-	-	4	1																																																																								5
CCT	-	-	8	4	1																																																																							13
CGA	-	-	2	1																																																																								3
CGC	-	-	2	1																																																																								3
CGG	-	-	3	2																																																																								5
CGT	-	-	1	1	1																																																																							3
CTA	-	-	1																																																																									1
CTC	-	-	1	1																																																																								2
CTG	-	-	8	2				1																																																																				11
CTT	-	-	9	3	1	1																																																																						14
GAA	-	-	8	4		1		1																																																																				14
GAC	-	-	3			1																																																																						4
GAG	-	-	5		1			1																																																																				7
GAT	-	-	3	2	1	2			1																																																																			9
GCA	-	-	4	2	1		1																																																																					8
GCC	-	-	4	1	1																																																																							6
GCG	-	-	2	2																																																																								4
GCT	-	-	7	2	2					1																																																																		12
GGA	-	-	6																																																																									6
GGC	-	-	2		1																																																																							3
GGT	-	-	4	3	4		1																																																																					12
GTA	-	-	1																																																																									1
GTC	-	-	1		1																																																																							2
GTG	-	-	6	1	2																																																																							9
GTT	-	-	2	3	1																																																																							6
TAA	-	-	2	1	1																																																																							4
TAC	-	-	1	1																																																																								2
TAG	-	-	1																																																		1																							2
TCA	-	-	8	2																																																																								10
TCC	-	-	6	3	4		1																																																																					14
TCG	-	-	4	1		2																																																																						7
TCT	-	-	9	1	3																																																																							13
TGA	-	-	4	2																																																																								6
TGC	-	-	6	1	2						1																																																																	10
TGG	-	-	2	3	1			1																																																																				7
TGT	-	-	5	4	1																																																																							10
TTA	-	-	1	1	1		1																																																																					4
TTC	-	-	7	1	1	2																																																																						11
TTG	-	-	2	2	1		2																																																																					7
AAAC	-	2																																																																										2
AAAG	-	1																																																																										1
AAAT	-	1																																																																										1
AACG	-	1																																																																										1
AAGA	-	1																																																																										1
AATA	-	3		1																												1																																												5
ACGC	-	1																																																																										1
ACGT	-	1																																																																										1
AGGA	-	5	1	1																																																																								7
AGGG	-	1																																																																										1
ATAA	-	3	2																																																																									5
ATCC	-	1																																																																										1
ATGA	-		2																																																																									2
ATGG	-	2	2		1		1																																																																					6
ATTT	-	2	1																																																																									3
CAAA	-	1		1																																																																								2
CAAC	-	1																																																																										1
CATC	-		1	1																																																																								2
CATT	-	1																																																																										1
CCAT	-	2	1		2																																																																							5
CGGA	-	1																																																																										1
CGTC	-	2																																																																										2
CTAA	-			1																																																																								1
CTGC	-	1																																																																										1
CTTC	-	1																																																																										1
CTTT	-	9	1	1																																																																								11
GAAA	-	6	2																																																																									8
GAAG	-	2	3																																																																									5
GAAT	-		1																																																																									1
GACG	-	2																																																																										2
GATG	-	3																																																																										3
GCAT	-	1																																																																										1
GCCG	-	1																																																																										1
GGAA	-		1																																																																									1
GGAC	-	1																																																																										1
GGAT	-	1		1																																																																								2
GGGA	-	1																																																																										1
TACA	-		1																																																																									1
TATT	-		1																																																																									1
TCAA	-	1																																																																										1
TCAG	-				1																																																																							1
TCAT	-	1																																																																										1
TCCA	-	3		1																																																																								4
TCCG	-		1																																																																									1
TCCT	-	2																																																																										2
TCTA	-	1																																																																										1
TCTT	-	2																																																																										2
TGAC	-	1																																																																										1
TGCT	-	1																																																																										1
TGGA	-	2																																																																										2
TTAA	-	1																																																																										1
TTAT	-	2		1																																																																							1	4
TTCC	-	2																																																																										2
TTCT	-	1																																																																										1
TTGC	-	1																																																																										1
TTTA	-	3			1																																																																							4
TTTC	-	3																																																																										3
AAAAG	2	1																																																																										3
AAAAT	4																																																																											4
AAAGA	1		1																																																																									2
AAAGG	2																																																																											2
AAATA	1																																																																											1
AAATT	1																																																																											1
AACCA	1																																																																											1
AAGAA	1																																																																											1
AAGAG	1																																																																											1
AAGGG	1																																																																											1
AAGTG	1	1																																																																										2
AATAA	2																																																																											2
AATAC	1																																																																											1
AATCA	1	1																																																																										2
AATCC	3																																																																											3
AATCG	1																																																																											1
AATCT	1																																																																											1
AATGA	1																																																																											1
AATGT	1																																																																											1
AATTA	1																																																																											1
AATTT	1																																																																											1
ACATT	1																																																																											1
ACCCT	1																																																																											1
ACGCG	2																																																																											2
AGAAC	1																																																																											1
AGAAG	1																																																																											1
AGAGA	1																																																																											1
AGATG	1																																																																											1
AGATT	2																																																																											2
AGCCA	1																																																																											1
AGGGA	1																																																																											1
AGGGG	2																																																																											2
AGGTT	1																																																																											1
ATAAA	1																																																																											1
ATATT	1																																																																											1
ATCGA	1																																																																											1
ATCTC	1																																																																											1
ATGGA	1																																																																											1
ATGTA	1	1																																																																										2
ATTAT	1																																																																											1
ATTGA	1																																																																											1
ATTGC	1																																																																											1
ATTTT	2																																																																											2
CACAA	1																																																																											1
CACCC	1																																																																											1
CATCT		1																																																																										1
CATGT	1																																																																											1
CATTA	2																																																																											2
CCACT	1																																																																											1
CCATC	1	1																																																																										2
CCCAA	1																																																																											1
CGACT	1																																																																											1
CGATG	1																																																																											1
CGCCC	1																																																																											1
CGCGT	2																																																																											2
CGTGT		1																																																																										1
CGTTC	1																																																																											1
CTAAT	2																																																																											2
CTATG	1																																																																											1
CTCTT	2																																																																											2
CTGCC	1																																																																											1
CTGGA	1																																																																											1
CTTCT	1																																																																											1
CTTTC	1				1																																																																							2
GAAAT	1																																																																											1
GAAGG	1																																																																											1
GACAA	2																																																																											2
GACGC	3																																																																											3
GAGAA	1																																																																											1
GAGAT	2	1																																																																										3
GATAG		1																																																																										1
GATTT	1																																																																											1
GCATA	1																																																																											1
GCATC	1																																																																											1
GCCAC	1																																																																											1
GCTTT	1																																																																											1
GGAAA	2																																																																											2
GGAAG	1																																																																											1
GGAGA	1																																																																											1
GGATC	1																																																																											1
GGCGG	1																																																																											1
GGGAA	1																																																																											1
GGGGA	2	1																																																																										3
GGGTG	1																																																																											1
GGGTT	1																																																																											1
GGTAC	1																																																																											1
GGTAT	1																																																																											1
GTATC	2																																																																											2
GTGAT	1																																																																											1
GTTTT	1																																																																											1
TAAAT			1																																																																									1
TAATG	1																																																																											1
TACAT	1																																																																											1
TACCC	1																																																																											1
TAGGA	1																																																																											1
TATTT	1																																																																											1
TCAGA		1																																																																										1
TCCAT	1																																																																											1
TCCCC	1																																																																											1
TCCGA	1																																																																											1
TCTAA	4																																																																											4
TCTGC		1																																																																										1
TCTTT		1																																																																										1
TGAGA	2																																																																											2
TGATC		1																																																																										1
TGGGG	1																																																																											1
TGTAA	1																																																																											1
TTAGA	1																																																																											1
TTATA	2																																																																											2
TTCCA	1																																																																											1
TTCCT	1																																																																											1
TTCGT	1																																																																											1
TTGTA	1																																																																											1
TTTAG	1																																																																											1
TTTCG	1	1																																																																										2
TTTGT	1																																																																											1
TTTTC	5																																																																											5
TTTTG	2																																																																											2
AAAAAC	2																																																																											2
AAAAAG	1																																																																											1
AAAAAT		1																																																																										1
AAAACA	2																																																																											2
AAAACC	1	6																																																																										7
AAAAGA		1																																																																										1
AAAGAA	1																																																																											1
AAAGGT	1																																																																											1
AAATAA	25																																																																											25
AAATAT	1																																																																											1
AACAAA	1																																																																											1
AACAGT	1																																																																											1
AAGAAA		1																																																																										1
AAGAGG	1																																																																											1
AAGCCC	1																																																																											1
AAGGAA		1																																																																										1
AAGGAG	1	1																																																																										2
AAGGGA							1																																																																					1
AAGGGC	1																																																																											1
AAGTCT		1																																																																										1
AATCCC			1																																																																									1
AATTAT	1																																																																											1
ACAATG	1																																																																											1
ACAATT		1																																																																										1
ACATGA		1																																																																										1
ACCCAC	1																																																																											1
ACCGGG	1																																																																											1
ACCTGC	1																																																																											1
ACTATC	1																																																																											1
ACTCAA	1																																																																											1
AGAAGC	1																																																																											1
AGAAGG	2																																																																											2
AGAGAA		1																																																																										1
AGAGAC	1																																																																											1
AGAGGG	1																																																																											1
AGCAGA		1	1																																																																									2
AGCAGG			1																																																																									1
AGCCAA	2																																																																											2
AGCTTC	1																																																																											1
AGGAAA	1																																																																											1
AGGAGA	1																																																																											1
AGGGAT	1																																																																											1
AGGGCA	1																																																																											1
AGTGGA	1																																																																											1
ATAATG	1																																																																											1
ATACCA	1																																																																											1
ATATAC														1																																																														1
ATCACC	1																																																																											1
ATCCCA	1																																																																											1
ATCCTC		1																																																																										1
ATGGAT	1																																																																											1
ATGGCA	1																																																																											1
ATGGGA		1			1																																																																							2
ATGGGT	1																																																																											1
ATGTAG	1																																																																											1
ATTCCC	1																																																																											1
ATTGGA	1																																																																											1
ATTTGC		1																																																																										1
CAAAAA	3																																																																											3
CAAAAC	2	20																																																																										22
CAAACC	1																																																																											1
CAACAG	1	1																																																																										2
CAAGCA	1																																																																											1
CAAGCT		1																																																																										1
CAAGGC	1																																																																											1
CAATCG	1																																																																											1
CAATCT	1																																																																											1
CACCAG	1																																																																											1
CACCAT	1																																																																											1
CACCCC	1																																																																											1
CACCCG	1																																																																											1
CACCGG	1																																																																											1
CACCTC	3	1																																																																										4
CACGCA	1																																																																											1
CAGAAA			1																																																																									1
CAGAAC	1																																																																											1
CAGAAG					1																																																																							1
CAGACA	1																																																																											1
CAGCAA	1	1																																																																										2
CAGCTC	2																																																																											2
CAGGCT	1																																																																											1
CAGTCT	1																																																																											1
CATATA	1																																																																											1
CATCGG	1																																																																											1
CATCTC	1																																																																											1
CATGAT	1																																																																											1
CATGGG						1																																																																						1
CATGGT		1																																																																										1
CCAAAC	1																																																																											1
CCAACA			1	1																																																																								2
CCAACC	1																																																																											1
CCAAGT	1																																																																											1
CCACAT	1																																																																											1
CCACCC	1																																																																											1
CCATCC		2																																																																										2
CCATGC				1																																																																								1
CCATTC	1																																																																											1
CCATTT	1																																																																											1
CCCAAA	1																																																																											1
CCCAGA		1																																																																										1
CCCAGC		2																																																																										2
CCCATA	1																																																																											1
CCCATC	2																																																																											2
CCCCAC			1																																																																									1
CCCCAT		1																																																																										1
CCCCCA	1																																																																											1
CCCCCG	1																																																																											1
CCCCCT	2																																																																											2
CCCGAC	1																																																																											1
CCCTAA	1																																																																											1
CCCTGC	1																																																																											1
CCGACG	1																																																																											1
CCGCCA	1																																																																											1
CCGGCA	1																																																																											1
CCGTTA	1																																																																											1
CCTCAA	1																																																																											1
CCTCAC	1																																																																											1
CCTCAT	2																																																																											2
CCTCCA	1	2																																																																										3
CCTCCC	2																																																																											2
CCTCGT	1																																																																											1
CCTCTC	1	1																																																																										2
CCTGCC	1																																																																											1
CCTGCT	1																																																																											1
CCTTTC	1																																																																											1
CCTTTT	1																																																																											1
CGAACC	1																																																																											1
CGACAC	1																																																																											1
CGACGT		1																																																																										1
CGAGGA	2																																																																											2
CGAGTC	1																																																																											1
CGATGC		1																																																																										1
CGCCGG	1																																																																											1
CGCCGT	1																																																																											1
CGCTGC	1																																																																											1
CGGTCC	1																																																																											1
CGTCGG	1																																																																											1
CGTTTG	1																																																																											1
CTACCA	1																																																																											1
CTACTC	1																																																																											1
CTATGG	1																																																																											1
CTCAAG	1																																																																											1
CTCATC	2																1																																																											3
CTCCAC	1																																																																											1
CTCCCC	4	2																																																																										6
CTCCCG	1	1																																																																										2
CTCTCC	1																																																																											1
CTCTGG	1																																																																											1
CTCTTC		1																																																																										1
CTGACT	1																																																																											1
CTGATC	1																																																																											1
CTGGAG	1	1																																																																										2
CTGGGG		1																																																																										1
CTGTCC	1																																																																											1
CTGTTG	1																																																																											1
CTTGCT	1																																																																											1
CTTGGT	1																																																																											1
CTTTCT			1																																																																									1
CTTTGC		1																																																																										1
CTTTTC	1																																																																											1
GAAAAA	1																																																																											1
GAAACG	1																																																																											1
GAACCT		1																																																																										1
GAACGT			1																																																																									1
GAAGAG	1																																																																											1
GAAGAT	1																																																																											1
GAAGGA	1																																																																											1
GAAGTG		1																																																																										1
GAATCC	1																																																																											1
GACCCG	1																																																																											1
GACGAG	1																																																																											1
GACGAT	1																																																																											1
GACTAC	1																																																																											1
GACTCC	1																																																																											1
GACTCG	1																																																																											1
GAGAAC	1																																																																											1
GAGACT																	1																																																											1
GAGATG	1																																																																											1
GAGGAA	2	1			1																																																																							4
GAGGAC		1																																																																										1
GAGGAT		1																																																																										1
GAGGGT		1																																																																										1
GAGGTG	1																																																																											1
GAGTCA	1																																																																											1
GATAAA	1																																																																											1
GATCTC	1																																																																											1
GATGAA	1																																																																											1
GATGAG	2																																																																											2
GATGGA	1																																																																											1
GATTCT					1																																																																							1
GATTGG	1																																																																											1
GATTTT	1																																																																											1
GCAACA	1																																																																											1
GCAAGA	1																																																																											1
GCACCA	1	1																																																																										2
GCACCT	1																																																																											1
GCAGGC	1																																																																											1
GCCACA	1																																																																											1
GCCAGC	1																																																																											1
GCCCCC	2																																																																											2
GCCGGG	1																																																																											1
GCCGTC	1																																																																											1
GCCTCA	1																																																																											1
GCCTGA	1																																																																											1
GCGCAT	1																																																																											1
GCGGTA	1																																																																											1
GCGTTT	1																																																																											1
GCTCAA	1																																																																											1
GCTGAG	1																																																																											1
GCTGAT	1																																																																											1
GCTGGT	1																																																																											1
GCTTCT	1																																																																											1
GCTTGA	1																																																																											1
GGAAAA	2																																																																											2
GGAAGG		1																																																																										1
GGACAA	1																																																																											1
GGACCA			1																																																																									1
GGACGA		1																																																																										1
GGAGAA		1																																																																										1
GGAGAG	1																																																																											1
GGAGCA				1																																																																								1
GGAGCG	2																																																																											2
GGAGCT	1																																																																											1
GGAGGG	1	1																																																																										2
GGAGGT		1																																																																										1
GGCCCG	1																																																																											1
GGCGAT	1																																																																											1
GGCGCA	1																																																																											1
GGCGCC	1																																																																											1
GGCGGA	1																																																																											1
GGCGGG	1																																																																											1
GGCGGT	1																																																																											1
GGCTCA		1																																																																										1
GGCTGT	1																																																																											1
GGGAAA	1																																																																											1
GGGAAG	1																																																																											1
GGGACT	1																																																																											1
GGGAGG	4																																																																											4
GGGATG	2																																																																											2
GGGCAA	1																																																																											1
GGGCAC	1																																																																											1
GGGGAA				1																																																																								1
GGGGAG		2																																																																										2
GGGGGA	5																																																																											5
GGGGGC	1																																																																											1
GGGGGT	1																																																																											1
GGGTAT	1																																																																											1
GGGTGC		1																																																																										1
GGGTGT		1																																																																										1
GGGTTA		1																																																																										1
GGTACG		1																																																																										1
GGTCGC	1																																																																											1
GGTGCA	1																																																																											1
GGTGGA	1																																																																											1
GGTGGC	2																																																																											2
GGTGTG	1																																																																											1
GGTTCA			1																																																																									1
GGTTCT	1																																																																											1
GGTTTC	1																																																																											1
GTAAAA	1																																																																											1
GTACCG	1																																																																											1
GTATGG	1																																																																											1
GTCCCG	1																																																																											1
GTCCGA		1																																																																										1
GTCTCT	2																																																																											2
GTCTGC			1																																																																									1
GTCTTT	1																																																																											1
GTGGCG	1																																																																											1
GTGTGG	1																																																																											1
GTTCGG			1																																																																									1
GTTGCT	1																																																																											1
GTTTCT	1																																																																											1
TAACAC		1																																																																										1
TACATT	1																																																																											1
TACCCA		1																																																																										1
TACCGG	1																																																																											1
TACTGC	1																																																																											1
TACTTG	1																																																																											1
TAGCAT		1																																																																										1
TAGGAT	1																																																																											1
TATTTT	30																																																																											30
TCAACA	1																																																																											1
TCAGAG	1																																																																											1
TCAGAT	1																																																																											1
TCAGGT			1																																																																									1
TCATCT	1				1																																																																							2
TCATTG		1																																																																										1
TCATTT	1																																																																											1
TCCAAT	1																																																																											1
TCCACA	1																																																																											1
TCCATT	1																																																																											1
TCCCAA	1																																																																											1
TCCCCC	1																																																																											1
TCCCGC	1																																																																											1
TCCCTC	1																																																																											1
TCCGCT	1																																																																											1
TCCTCA	1	2																		1																																																								4
TCCTCT	2																																																																											2
TCCTTC	2																																																																											2
TCCTTG		1																																																																										1
TCGCAT	1																																																																											1
TCGCTG	1																																																																											1
TCTAAA	1																																																																											1
TCTCAG	1																																																																											1
TCTCCC	3																																																																											3
TCTCCT	1																																																																											1
TCTCTG	1																																																																											1
TCTCTT	1																																																																											1
TCTGCT	1																																																																											1
TCTGGT	1																																																																											1
TCTTCA	1																																																																											1
TCTTCC	3																																																																											3
TCTTCG	1																																																																											1
TCTTGC		1																																																																										1
TCTTTT	2																																																																											2
TGACCT	1																																																																											1
TGACGA	1																																																																											1
TGAGCC	1																																																																											1
TGATTT	1																																																																											1
TGCAAC		1																																																																										1
TGCACC	1																																																																											1
TGCAGG		1																																																																										1
TGCCCC		1																																																																										1
TGCCCT		1																																																																										1
TGCGAG	1																																																																											1
TGCGCG	1																																																																											1
TGCTCG						1																																																																						1
TGCTGA	1																																																																											1
TGCTGT	1																																																																											1
TGGAAG			1																																																																									1
TGGCAG		1																																																																										1
TGGCTC	1																																																																											1
TGGGAA	1																																																																											1
TGGGAT	1																																																																											1
TGGGCT		1																																																																										1
TGGGGT	1																																																																											1
TGGTGC	1																																																																											1
TGGTGT	1	1																																																																										2
TGTCAT	1																																																																											1
TGTCCT	1																																																																											1
TGTGGA	1																																																																											1
TGTTTT	1																																																																											1
TTACAA	1																																																																											1
TTAGGC	1																																																																											1
TTAGGG	1	1																																																																										2
TTATAT	1																																																																											1
TTATTT	1																																																																											1
TTCACA	1																																																																											1
TTCAGA		1																																																																										1
TTCATC	2																																																																											2
TTCCCT	1																																																																											1
TTCCTT	3																																																																											3
TTCTCC	2																																																																											2
TTGGCG	1																																																																											1
TTTATT	1																																																																											1
TTTCCA	1																																																																											1
TTTCCC	1																																																																											1
TTTCCT	1																																																																											1
TTTCTC	1																																																																											1
TTTGCC		1																																																																										1
TTTGCT	1																																																																											1
TTTGGG	1																																																																											1
TTTGGT	1																																																																											1
TTTTCT	1	1																																																																										2
TTTTTA	2																																																																											2
TTTTTC	2																																																																											2
TTTTTG	1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	9	5	4	4	5	5	3	3	8	1	2	1													1																																	57
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2		1	1			1																																																			6
AC/GT	-	-	-	23	3	7	2			1																																																																		36
AG/CT	-	-	-	62	12	7	1	3		1	1		1																																																															88
AT/AT	-	-	-	70	27	20	33	10	5	5	1	1	3	1		2		1					1																																																					180
CG/CG	-	-	-	2																																																																								2
AAC/GTT	-	-	18	11	4		3																																																																					36
AAG/CTT	-	-	58	15	8	4		1																																																																				86
AAT/ATT	-	-	9	3	5		1	1																																																																				19
ACC/GGT	-	-	24	13	8	1	2	1		1																	1																																																	51
ACG/CGT	-	-	11	3	2	3																																																																						19
ACT/AGT	-	-	4	2																																																	1																							7
AGC/CTG	-	-	36	15	7	3	1	1		1	1																																																																	65
AGG/CCT	-	-	32	12	6		1	1																																																																				52
ATC/ATG	-	-	29	12	2	2			1																																																																			46
CCG/CGG	-	-	17	7	2																																																																							26
AAAC/GTTT	-	3		1																																																																								4
AAAG/CTTT	-	23	3	1																																																																								27
AAAT/ATTT	-	14	4	2	1																											1																																											1	23
AACC/GGTT	-	1																																																																										1
AACG/CGTT	-	1																																																																										1
AACT/AGTT	-			1																																																																								1
AAGC/CTTG	-	2																																																																										2
AAGG/CCTT	-	12	5	1																																																																								18
AATC/ATTG	-	1																																																																										1
AATG/ATTC	-	2	3																																																																									5
AATT/AATT	-	1																																																																										1
ACAT/ATGT	-		1																																																																									1
ACGC/CGTG	-	1																																																																										1
ACGG/CCGT	-	6	1																																																																									7
ACGT/ACGT	-	1																																																																										1
ACTG/AGTC	-	1			1																																																																							2
AGAT/ATCT	-	1																																																																										1
AGGC/CCTG	-	1																																																																										1
AGGG/CCCT	-	2																																																																										2
ATCC/ATGG	-	14	4	3	3		1																																																																					25
ATGC/ATGC	-	1																																																																										1
CCGG/CCGG	-	1																																																																										1
AAAAC/GTTTT	4																																																																											4
AAAAG/CTTTT	9	2	1																																																																									12
AAAAT/ATTTT	11																																																																											11
AAACC/GGTTT	1																																																																											1
AAACG/CGTTT	2	1																																																																										3
AAACT/AGTTT	1																																																																											1
AAAGC/CTTTG	1																																																																											1
AAAGG/CCTTT	6				1																																																																							7
AAATC/ATTTG	2	1																																																																										3
AAATG/ATTTC	2																																																																											2
AAATT/AATTT	3		1																																																																									4
AACAC/GTGTT	1																																																																											1
AACAG/CTGTT	1																																																																											1
AACCC/GGGTT	2																																																																											2
AACCT/AGGTT	1																																																																											1
AACGG/CCGTT	1																																																																											1
AAGAC/CTTGT	2																																																																											2
AAGAG/CTCTT	7																																																																											7
AAGCC/CTTGG	1																																																																											1
AAGGG/CCCTT	5																																																																											5
AAGTG/ACTTC	1	1																																																																										2
AATAC/ATTGT	2																																																																											2
AATAT/ATATT	4																																																																											4
AATCC/ATTGG	3																																																																											3
AATCG/ATTCG	2																																																																											2
AATCT/AGATT	10																																																																											10
AATGC/ATTGC	1																																																																											1
AATGG/ATTCC	3																																																																											3
AATGT/ACATT	8	1																																																																										9
AATTC/AATTG	1																																																																											1
ACACG/CGTGT		1																																																																										1
ACATC/ATGTG	1																																																																											1
ACATG/ATGTC	1																																																																											1
ACCAT/ATGGT	1																																																																											1
ACCCC/GGGGT	3																																																																											3
ACCCT/AGGGT	2																																																																											2
ACCGT/ACGGT	1																																																																											1
ACGAT/ATCGT	2																																																																											2
ACGCC/CGTGG	1																																																																											1
ACGCG/CGCGT	7																																																																											7
ACTCC/AGTGG	1																																																																											1
ACTCG/AGTCG	1																																																																											1
ACTGG/AGTCC	1																																																																											1
AGAGC/CTCTG		1																																																																										1
AGAGG/CCTCT	1																																																																											1
AGATC/ATCTG		2																																																																										2
AGATG/ATCTC	6	2																																																																										8
AGCAT/ATGCT	2																																																																											2
AGGAT/ATCCT	1	1																																																																										2
AGGGC/CCCTG	1																																																																											1
AGGGG/CCCCT	5	1																																																																										6
ATCCC/ATGGG	1	1																																																																										2
ATCCG/ATCGG	2																																																																											2
ATCGC/ATGCG	2																																																																											2
CCCCG/CGGGG	2																																																																											2
AAAAAC/GTTTTT	10																																																																											10
AAAAAG/CTTTTT	8	3																																																																										11
AAAAAT/ATTTTT	59	1																																																																										60
AAAACC/GGTTTT	4	26																																																																										30
AAAAGC/CTTTTG	1																																																																											1
AAAAGG/CCTTTT	9	1																																																																										10
AAAAGT/ACTTTT	1																																																																											1
AAAATC/ATTTTG	2																																																																											2
AAAATG/ATTTTC	1																																																																											1
AAACAG/CTGTTT	1		1																																																																									2
AAACCC/GGGTTT	4																																																																											4
AAACCG/CGGTTT	1																																																																											1
AAACGC/CGTTTG	2																																																																											2
AAACGG/CCGTTT	1																																																																											1
AAACTC/AGTTTG	1																																																																											1
AAAGAC/CTTTGT	1																																																																											1
AAAGAG/CTCTTT	2	1	1																																																																									4
AAAGAT/ATCTTT	1																																																																											1
AAAGCC/CTTTGG	2																																																																											2
AAAGGC/CCTTTG		2																																																																										2
AAAGGG/CCCTTT	4						1																																																																					5
AAAGGT/ACCTTT	1																																																																											1
AAATAT/ATATTT	2																																																																											2
AAATCT/AGATTT	1																																																																											1
AAATGC/ATTTGC		1																																																																										1
AAATGG/ATTTCC	3																																																																											3
AAATGT/ACATTT	1																																																																											1
AACACC/GGTGTT	1	1	1	1																																																																								4
AACACT/AGTGTT		1																																																																										1
AACAGC/CTGTTG	6	2																																																																										8
AACAGT/ACTGTT	1																																																																											1
AACATC/ATGTTG	1																																																																											1
AACATG/ATGTTC		1																																																																										1
AACCAG/CTGGTT	3																																																																											3
AACCCC/GGGGTT	2																																																																											2
AACCCG/CGGGTT	1		1																																																																									2
AACCCT/AGGGTT	2	2																																																																										4
AACCTC/AGGTTG	1																																																																											1
AACCTG/AGGTTC		1	2																																																																									3
AACGAG/CGTTCT	1																																																																											1
AACGCC/CGTTGG	1																																																																											1
AACGGT/ACCGTT	1																																																																											1
AACGTG/ACGTTC			1																																																																									1
AACTGC/AGTTGC		1																																																																										1
AAGACC/CTTGGT	1																																																																											1
AAGACG/CGTCTT	1																																																																											1
AAGAGC/CTCTTG	2	1																																																																										3
AAGAGG/CCTCTT	9	2			1																																																																							12
AAGATG/ATCTTC	6				1																																																																							7
AAGCAC/CTTGTG	1																																																																											1
AAGCAG/CTGCTT	3	1	1		1																																																																							6
AAGCCC/CTTGGG	1	1																																																																										2
AAGCCT/AGGCTT	1																																																																											1
AAGCGG/CCGCTT	1																																																																											1
AAGCTC/AGCTTG	3	1																																																																										4
AAGCTG/AGCTTC	1																																																																											1
AAGGAC/CCTTGT	2	1																																																																										3
AAGGAG/CCTTCT	10	2																																																																										12
AAGGCC/CCTTGG	1																																																																											1
AAGGGC/CCCTTG	3	1																																																																										4
AAGGGG/CCCCTT	1	1		1																																																																								3
AAGGTC/ACCTTG	1																																																																											1
AAGTAC/ACTTGT	1																																																																											1
AAGTCC/ACTTGG	1																																																																											1
AAGTCT/ACTTAG		1																																																																										1
AAGTGG/ACTTCC	1	1	1																																																																									3
AATACC/ATTGGT	1																																																																											1
AATCAG/ATTCTG					1																																																																							1
AATCCC/ATTGGG	4		1																																																																									5
AATCCG/ATTCGG	1																																																																											1
AATCCT/AGGATT	1																																																																											1
AATCGC/ATTGCG	1																																																																											1
AATCTC/AGATTG	1																																																																											1
AATCTG/AGATTC	1	1																																																																										2
AATGAC/ATTGTC	2	1																																																																										3
AATGAT/ATCATT	1																																																																											1
AATGCG/ATTCGC	1																																																																											1
AATGCT/AGCATT		1																																																																										1
AATGGC/ATTGCC	1																																																																											1
AATGGG/ATTCCC	3	1			1																																																																							5
AATGTG/ACATTC	1																																																																											1
AATTAC/AATTGT	1	1																																																																										2
AATTAT/AATTAT	1																																																																											1
AATTCC/AATTGG	2																																																																											2
ACACAG/CTGTGT	1																																																																											1
ACACCC/GGGTGT	3	1																																																																										4
ACACCG/CGGTGT	1																																																																											1
ACACGC/CGTGTG	1																																																																											1
ACAGAG/CTCTGT	4																																																																											4
ACAGCC/CTGTGG	2																																																																											2
ACAGCG/CGCTGT	1																																																																											1
ACAGGG/CCCTGT	1																																																																											1
ACATAT/ATATGT	1													1																																																														2
ACATCC/ATGTGG	3																																																																											3
ACATCT/AGATGT	1																																																																											1
ACCACT/AGTGGT	1																																																																											1
ACCAGC/CTGGTG	4	1																																																																										5
ACCAGG/CCTGGT			1																																																																									1
ACCATC/ATGGTG	2																																																																											2
ACCATG/ATGGTC		1																																																																										1
ACCCAG/CTGGGT		1																																																																										1
ACCCAT/ATGGGT	4	1																																																																										5
ACCCCC/GGGGGT	4		1																																																																									5
ACCCCG/CGGGGT	1																																																																											1
ACCCGC/CGGGTG	1	1																																																																										2
ACCCGG/CCGGGT	1																																																																											1
ACCCGT/ACGGGT		1																																																																										1
ACCCTC/AGGGTG	1	1																																																																										2
ACCGCC/CGGTGG	5																																																																											5
ACCGCG/CGCGGT	1																																																																											1
ACCGCT/AGCGGT	1																																																																											1
ACCGGC/CCGGTG	2																																																																											2
ACCGGG/CCCGGT	3																																																																											3
ACCGGT/ACCGGT	2																																																																											2
ACCTCC/AGGTGG	7	4																																																																										11
ACCTGC/AGGTGC	4	1																																																																										5
ACGACT/AGTCGT	1																																																																											1
ACGAGC/CGTGCT						1																																																																						1
ACGAGG/CCTCGT	4	2																																																																										6
ACGATG/ATCGTC	2																																																																											2
ACGCAG/CGTCTG			1																																																																									1
ACGCCG/CGGCGT	2																																																																											2
ACGCGC/CGCGTG	1																																																																											1
ACGGCG/CCGTCG	2																																																																											2
ACGGGC/CCCGTG	1																																																																											1
ACGTCG/ACGTCG		1																																																																										1
ACTATC/AGTGAT	1																																																																											1
ACTCCG/AGTCGG	1																																																																											1
ACTCCT/AGGAGT	1																																																																											1
ACTCGC/AGTGCG	1																																																																											1
ACTCGG/AGTCCG	2	1																																																																										3
ACTCTG/AGAGTC	3																																																																											3
ACTGAG/AGTCTC	2																1																																																											3
ACTGCC/AGTGGC		1																																																																										1
ACTGCT/AGCAGT	1																																																																											1
ACTGGG/AGTCCC	1																																																																											1
AGAGCC/CTCTGG	2																																																																											2
AGAGGG/CCCTCT	8	1																																																																										9
AGATCG/ATCTCG	1																																																																											1
AGATGG/ATCTCC	3																																																																											3
AGCAGG/CCTGCT	1		1	1																																																																								3
AGCATC/ATGCTG	2																																																																											2
AGCCAT/ATGGCT	1																																																																											1
AGCCCC/CTGGGG		3																																																																										3
AGCCTC/AGGCTG	2																																																																											2
AGCCTG/AGGCTC	3	1																																																																										4
AGCGCC/CGCTGG	1																																																																											1
AGCGGC/CCGCTG	1																																																																											1
AGCGGG/CCCGCT	4	1																																																																										5
AGCTCC/AGCTGG	4	1																																																																										5
AGGATC/ATCCTG	1																																																																											1
AGGATG/ATCCTC	7	4															1			1																																																								13
AGGCGC/CCTGCG	2																																																																											2
AGGCGG/CCGCCT	1																																																																											1
AGGGAT/ATCCCT	1																																																																											1
AGGGGC/CCCCTG	2	1																																																																										3
AGGGGG/CCCCCT	19	5																																																																										24
ATATCC/ATATGG	1																																																																											1
ATCATG/ATCATG	1																																																																											1
ATCCCC/ATGGGG	4	3																																																																										7
ATCGCC/ATGGCG	1																																																																											1
ATCGGC/ATGCCG	1	1																																																																										2
ATGCCC/ATGGGC				1		1																																																																						2
ATGCGC/ATGCGC	1																																																																											1
CCCCCG/CGGGGG	5																																																																											5
CCCCGG/CCGGGG	1																																																																											1
CCCGGG/CCCGGG	1																																																																											1
CCGGCG/CCGGCG	2																																																																											2
