Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-56/megassr/results/hub_GCA_009999465.1/fasta/hub_GCA_009999465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           4718465
Total number of identified SSRs:                 25
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	9
4	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	2							2
GC	-	-	-	2							2
TA	-	-	-	1							1
CGG	-	-	2								2
CTG	-	-	1							1	2
GCC	-	-	1								1
GCG	-	-	3								3
GCT	-	-	1								1
GCCA	-	1									1
AAAAT	1										1
CGCGC	1										1
GGCGC	1										1
CACGAC					1						1
CGACAG	1										1
CGACTT	1										1
CTGGCG	1										1
GCTGGC	1										1
TAAAAA	1										1
TGTTTA		1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	4							4
AGC/CTG	-	-	2							1	3
CCG/CGG	-	-	6								6
AGCC/CTGG	-	1									1
AAAAT/ATTTT	1										1
CCGCG/CGCGG	2										2
AAAAAT/ATTTTT	1										1
AAACAT/ATGTTT		1									1
AAGTCG/ACTTCG	1										1
ACAGCG/CGCTGT	1										1
ACCACG/CGTGGT					1						1
AGCGCC/CGCTGG	2										2
