Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-96/megassr/results/hub_GCA_009999425.1/fasta/hub_GCA_009999425.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              40
Total size of examined sequences (bp):           4825291
Total number of identified SSRs:                 26
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	10
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3		3
GC	-	-	-	2		2
AGC	-	-	1			1
CAG	-	-	1			1
CCG	-	-	1			1
CGG	-	-	1			1
GCC	-	-	1			1
GCG	-	-	2	1		3
TGG	-	-	1			1
TTA	-	-	1			1
AAAAT	1					1
CGCGC	1					1
CGCGG	1					1
GGCGC	1					1
ATCACC	1					1
CCATGA					1	1
CGACTT	1					1
CGGCTT	1					1
CTGGCG	1					1
GCCAGC	1					1
TCGCTG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5		5
AAT/ATT	-	-	1			1
ACC/GGT	-	-	1			1
AGC/CTG	-	-	2			2
CCG/CGG	-	-	5	1		6
AAAAT/ATTTT	1					1
CCGCG/CGCGG	3					3
AAGCCG/CGGCTT	1					1
AAGTCG/ACTTCG	1					1
ACAGCG/CGCTGT	1					1
ACCATC/ATGGTG	1					1
ACCATG/ATGGTC					1	1
AGCGCC/CGCTGG	2					2
