Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_009785955.1/fasta/hub_GCA_009785955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              468
Total size of examined sequences (bp):           2064546
Total number of identified SSRs:                 8
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	4
5	1
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CAG	-	-	1	1
CCG	-	-	1	1
CTT	-	-	1	1
GCC	-	-	1	1
GTTCC	1			1
ATCGGC	1			1
GGAAGA	1			1
TTTTCC	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAG/CTT	-	-	1	1
AGC/CTG	-	-	1	1
CCG/CGG	-	-	2	2
AACGG/CCGTT	1			1
AAAAGG/CCTTTT	1			1
AAGAGG/CCTCTT	1			1
ATCGGC/ATGCCG	1			1
