Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_009778635.1/fasta/hub_GCA_009778635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              369
Total size of examined sequences (bp):           1861041
Total number of identified SSRs:                 23
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	7
3	8
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1				1
AG	-	-	-	1																			1
CG	-	-	-	3																			3
GA	-	-	-		1																		1
GC	-	-	-	1																			1
TC	-	-	-																			1	1
CCG	-	-	1																				1
CGC	-	-	1																				1
CGG	-	-	1																				1
GCG	-	-	1																				1
GGC	-	-	1	2																			3
TTC	-	-	1																				1
AGCCG	1																						1
CCCCT	1																						1
GCCGC	1																						1
TTTCG	1																						1
CATCCC	1																						1
GTTAGC			1																				1
TTTGCC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1				1
AG/CT	-	-	-	1	1																	1	3
CG/CG	-	-	-	4																			4
AAG/CTT	-	-	1																				1
CCG/CGG	-	-	5	2																			7
AAACG/CGTTT	1																						1
AGCCG/CGGCT	1																						1
AGGGG/CCCCT	1																						1
CCGCG/CGCGG	1																						1
AAAGGC/CCTTTG	1																						1
AACGCT/AGCGTT			1																				1
ATCCCC/ATGGGG	1																						1
