Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_009777735.1/fasta/hub_GCA_009777735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           2688616
Total number of identified SSRs:                 29
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	1
3	13
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1							1																																																																												2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																1																																																																							1	2
TA	-	-	-	1																																																																																																					1
AGA	-	-	1																																																																																																						1
CCG	-	-			1																																																																																																				1
CGG	-	-	1			1																																																																																																			2
CTG	-	-	1																																																																																																						1
CTT	-	-	1																																																																																																						1
GAA	-	-	1																																																																																																						1
GCA	-	-	1																																																																																																						1
GCG	-	-		1																																																																																																					1
GGA	-	-	1																																																																																																						1
GGC	-	-	2	1																																																																																																					3
CCGTG	1																																																																																																								1
GAATT	1																																																																																																								1
TTTTA	1																																																																																																								1
AAGAAA	1																																																																																																								1
CAAAAC	1																																																																																																								1
CTGCGG	1																																																																																																								1
TCAGGT	3																																																																																																								3
TGCCGC	1																																																																																																								1
TTCCTC	1																																																																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1							1				1																																																																							1	4
AT/AT	-	-	-	1																																																																																																					1
AAG/CTT	-	-	3																																																																																																						3
AGC/CTG	-	-	2																																																																																																						2
AGG/CCT	-	-	1																																																																																																						1
CCG/CGG	-	-	3	2	1	1																																																																																																			7
AAAAT/ATTTT	1																																																																																																								1
AATTC/AATTG	1																																																																																																								1
ACGGC/CCGTG	1																																																																																																								1
AAAAAG/CTTTTT	1																																																																																																								1
AAAACC/GGTTTT	1																																																																																																								1
AACCTG/AGGTTC	3																																																																																																								3
AAGAGG/CCTCTT	1																																																																																																								1
AGCCGC/CGGCTG	1																																																																																																								1
AGCGGC/CCGCTG	1																																																																																																								1
