Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-10/megassr/results/hub_GCA_009777535.1/fasta/hub_GCA_009777535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              47
Total size of examined sequences (bp):           2767070
Total number of identified SSRs:                 27
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	12
3	7
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			2		2	1	1				1								7
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1						1				1							4
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1	1
ATC	-	-	2																																	2
CAT	-	-	1																																	1
CCG	-	-	2																																	2
CGG	-	-	1																																	1
GGC	-	-	1																																	1
ATATT	1																																			1
ATCGA	1																																			1
ATTTT	1																																			1
AAAATG	1																																			1
AAGAAA	1																																			1
ACTGGT	1																																			1
TTATTT	1																																			1
TTTAGC	1																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1	1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	2		2	1	1	1			1	1							11
ATC/ATG	-	-	3																																	3
CCG/CGG	-	-	4																																	4
AAAAT/ATTTT	1																																			1
AATAT/ATATT	1																																			1
AATCG/ATTCG	1																																			1
AAAAAG/CTTTTT	1																																			1
AAAAAT/ATTTTT	1																																			1
AAAATG/ATTTTC	1																																			1
AAAGCT/AGCTTT	1																																			1
ACCAGT/ACTGGT	1																																			1
