Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-9/megassr/results/hub_GCA_009777335.1/fasta/hub_GCA_009777335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              28
Total size of examined sequences (bp):           2163713
Total number of identified SSRs:                 27
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
3	10
4	1
5	4
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1	2
AGG	-	-		1																		1
CCG	-	-	1																			1
CCT	-	-	1																			1
CGC	-	-	1																			1
GCC	-	-	2																			2
GGC	-	-	1																			1
GGT	-	-			1																	1
GTG	-	-		1																		1
TGG	-	-	1																			1
GAAG	-	1																				1
CCCCT	2																					2
CTCCC	1																					1
TAGTA	1																					1
AGGGCC	1																					1
CCAGGG	1																					1
CCGCCC	1																					1
CTTTGT	1																					1
GAAGAG			1																			1
GAAGCC	1																					1
GCCCTG	1																					1
GGTCTT	1																					1
TCTTGG	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1	2
ACC/GGT	-	-	1	1	1																	3
AGG/CCT	-	-	1	1																		2
CCG/CGG	-	-	5																			5
AAGG/CCTT	-	1																				1
ACTAT/AGTAT	1																					1
AGGGG/CCCCT	3																					3
AAAGAC/CTTTGT	1																					1
AAGACC/CTTGGT	2																					2
AAGAGG/CCTCTT			1																			1
AAGCCG/CGGCTT	1																					1
AGGGCC/CCCTGG	3																					3
CCCCCG/CGGGGG	1																					1
