Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-8/megassr/results/hub_GCA_009777215.1/fasta/hub_GCA_009777215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           1344073
Total number of identified SSRs:                 22
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	14
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CT	-	-	-													1	1
CCG	-	-	1	1		1											3
CGC	-	-	1														1
CGG	-	-	2														2
GCA	-	-	1														1
GCC	-	-	1														1
GCG	-	-	1														1
GGC	-	-	3	1													4
TTC	-	-	1														1
TGGC	-	1															1
AGCGC	1																1
GGCGG	1																1
AAGAAA		1															1
CCAACG										1							1
GCCCCA	1																1
GCCGAG	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AG/CT	-	-	-													1	1
AAG/CTT	-	-	1														1
AGC/CTG	-	-	1														1
CCG/CGG	-	-	9	2		1											12
AGCC/CTGG	-	1															1
AGCGC/CGCTG	1																1
CCCCG/CGGGG	1																1
AAAAAG/CTTTTT		1															1
AACGCC/CGTTGG										1							1
AGCCCC/CTGGGG	1																1
AGGCCG/CCTCGG	1																1
