Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-7/megassr/results/hub_GCA_009776855.1/fasta/hub_GCA_009776855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              424
Total size of examined sequences (bp):           2147950
Total number of identified SSRs:                 19
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	11
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CCG	-	-	1		1	2
CCT	-	-			1	1
CGG	-	-	2			2
CTC	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1			1
GCT	-	-	2			2
GGC	-	-	1			1
CCGGG	1					1
CGCCG	1					1
GCCCC	1					1
CCGCTT	1					1
CCGGGA	1					1
GGCCCA	1					1
GTGGTA	1					1
TTCCTG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AGC/CTG	-	-	2			2
AGG/CCT	-	-	1		1	2
CCG/CGG	-	-	6		1	7
CCCCG/CGGGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	1					1
AACAGG/CCTGTT	1					1
AAGCGG/CCGCTT	1					1
ACCACT/AGTGGT	1					1
ACCGGG/CCCGGT	1					1
AGGCCC/CCTGGG	1					1
