Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_009776845.1/fasta/hub_GCA_009776845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              442
Total size of examined sequences (bp):           2260644
Total number of identified SSRs:                 18
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	4
5	8
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1	1	2
TA	-	-	-	3		3
CCG	-	-	2			2
GCC	-	-	2			2
AAAGA	1					1
AAGGG	1					1
AGGAA	2					2
ATATT	1					1
CCCTT	1					1
CTTTT	1					1
GGGAA	1					1
ACCGGA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	4	1	5
CCG/CGG	-	-	4			4
AAAAG/CTTTT	2					2
AAAGG/CCTTT	2					2
AAGGG/CCCTT	3					3
AATAT/ATATT	1					1
AACCGG/CCGGTT	1					1
