Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_009776715.1/fasta/hub_GCA_009776715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              464
Total size of examined sequences (bp):           2487402
Total number of identified SSRs:                 26
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	5
4	2
5	9
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
TC	-	-	-												1	1
TG	-	-	-	1						1						2
CCG	-	-	1													1
CGG	-	-	1													1
GGC	-	-	1													1
TAA	-	-	1	1												2
GCAA	-	1														1
GCCT	-	1														1
AAAAT	1															1
ATTTT	2															2
CAATG	1															1
GAAAT	1															1
GCCGC	1															1
GGAAC	1															1
TTCTT	1															1
TTTTA	1															1
AAAATC	1															1
ATAATT	1															1
ATTAAA	1															1
GGGGAA	1															1
TTTAAT	1															1
TTTCTT	2															2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AC/GT	-	-	-	1						1						2
AG/CT	-	-	-												1	1
AAT/ATT	-	-	1	1												2
CCG/CGG	-	-	3													3
AAGC/CTTG	-	1														1
AGGC/CCTG	-	1														1
AAAAG/CTTTT	1															1
AAAAT/ATTTT	4															4
AAATG/ATTTC	1															1
AACGG/CCGTT	1															1
AATGC/ATTGC	1															1
CCGCG/CGCGG	1															1
AAAAAG/CTTTTT	2															2
AAAATC/ATTTTG	1															1
AAAATT/AATTTT	2															2
AAGGGG/CCCCTT	1															1
AATTAT/AATTAT	1															1
