Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_009770625.1/fasta/hub_GCA_009770625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7227
Total size of examined sequences (bp):           31556583
Total number of identified SSRs:                 20305
Number of SSR containing sequences:              5720
Number of sequences containing more than 1 SSR:  4393
Number of SSRs present in compound formation:    3228


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	71
2	15258
3	2208
4	969
5	768
6	1031

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	37	1	2		2		1					1																										44
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	1	2	1		1		1																														9
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	6		1	1	1				1																												16
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1											1																							2
AC	-	-	-	355	396	302	252	188	147	101	80	72	52	19	20	26	15	12	8	8	5	2	13	5	5	5	3	4	1	4		2	1	1	1					1												1			2107
AG	-	-	-	397	254	116	51	16	4	3		2																																											843
AT	-	-	-	185	202	222	203	178	103	63	53	29	15	14	10	4	9	9	5	1	1	2																										1							1309
CA	-	-	-	585	557	443	321	241	173	103	82	85	55	44	15	17	16	14	6	5	4	3	4	3	2	1	2	4		3			1	1	1	1	1	2		1	2	1	1												2800
CG	-	-	-	78	6	1																																																	85
CT	-	-	-	370	282	120	50	14	5	1		3																																											845
GA	-	-	-	295	218	101	36	16	6	3	1																																												676
GC	-	-	-	38	5																																																		43
GT	-	-	-	431	497	389	258	189	127	118	90	77	42	34	18	17	15	14	12	6	5	8	7	3	3	2	2	5	1		2					1	1		1			1								2					2378
TA	-	-	-	163	169	176	142	91	60	38	19	11	5	8	5	4	1	3	3	1	2		2							3																									906
TC	-	-	-	337	204	100	43	7	2	2	1																																											1	697
TG	-	-	-	477	474	419	331	202	154	139	79	79	53	36	23	22	22	12	4	7	5	6	2	1	3	3	1		4	2	1		3		1		1	1					1										1		2569
AAC	-	-	16	7	1																																																		24
AAG	-	-	1																																																				1
AAT	-	-	21	7	2																																																		30
ACA	-	-	8			1																																																	9
ACC	-	-	19	3	8	3																																																	33
ACG	-	-	6	1	1																																																		8
ACT	-	-		1																																																			1
AGA	-	-	2	1																																																			3
AGC	-	-	35	24	20	5	2	1																																															87
AGG	-	-	26	12	8	4	1	1																																															52
AGT	-	-		1																																																			1
ATA	-	-	17	2																																																			19
ATC	-	-	2	1	1	1																																																	5
ATG	-	-	3	1				1																																															5
ATT	-	-	5	3																																																			8
CAA	-	-	22	2	3	1																																																	28
CAC	-	-	33	16	14	2	2																																																67
CAG	-	-	71	35	19	10	1	1	1																																														138
CAT	-	-	8	3	2	2	1	1																																															17
CCA	-	-	44	26	21	4	4					2																																											101
CCG	-	-	16	3	2				1																																														22
CCT	-	-	65	27	13	6	2	4																																															117
CGA	-	-	14	1	3																																																		18
CGC	-	-	24	8	2		1																																																35
CGG	-	-	20	5	3																																																		28
CGT	-	-	10	9	2						1																																												22
CTA	-	-	2			2	1																																																5
CTC	-	-	31	27	11	2	1	1	2																																														75
CTG	-	-	62	29	15	11	2																																																119
CTT	-	-	5	1																																																			6
GAA	-	-	2																																																				2
GAC	-	-	22	6	2																																																		30
GAG	-	-	45	21	14	4	3	3	1								1																																						92
GAT	-	-	6	1	1																																																		8
GCA	-	-	57	30	18	5	6		1																																														117
GCC	-	-	21	10	4																																																		35
GCG	-	-	19	3	1																																																		23
GCT	-	-	64	36	21	8	4		2																																														135
GGA	-	-	40	13	11	9	3	3				2																																											81
GGC	-	-	22	10	4																																																		36
GGT	-	-	49	20	17	4	2																																																92
GTA	-	-	1	1																																																			2
GTC	-	-	8	3	2																																																		13
GTG	-	-	29	16	5	2	1																																																53
GTT	-	-	8	3	4																																																		15
TAA	-	-	5	2	1		1																																																9
TAG	-	-	2			1																																																	3
TAT	-	-	10	6							1																																												17
TCA	-	-	2		2																																																		4
TCC	-	-	18	15	5	4	1		1																																														44
TCG	-	-	11	4	5																																																		20
TCT	-	-	3																																																				3
TGA	-	-	6	2				1																																															9
TGC	-	-	69	37	16	9	1	1	1																																														134
TGG	-	-	26	18	6	2	2																																																54
TGT	-	-	19	3	1	1																																																	24
TTA	-	-	25	7	1										1																																								34
TTC	-	-	1																																																				1
TTG	-	-	21	10	3																																																		34
AAAC	-	9	2																																																				11
AAAT	-	4	2																																																				6
AACA	-			1																																																			1
AACG	-	1																																																					1
AAGA	-	2																																																					2
AAGC	-	1																																																					1
AAGG	-	2	2																																																				4
AATA	-	7	1		1																																																		9
ACAA	-	1	1																																																				2
ACAG	-	2	2		1																																																		5
ACAT	-	8	4	1	1		1																																																15
ACCC	-	5	7	1																																																			13
ACGC	-	9	14																																																				23
AGAA	-	2																																																					2
AGAC	-	1	2																																																				3
AGAT	-	2																																																					2
AGCA	-	3																																																					3
AGCG	-	2																																																					2
AGGA	-	5	1																																																				6
AGGC	-	2																																																					2
AGGG	-	13	7	2	2	1																																																	25
AGTG	-		1																																																				1
ATAA	-	3																																																					3
ATAC	-	2	8	4		1																																																	15
ATAG	-	3	1	1																																																			5
ATCA	-	1																																																					1
ATCT	-	1		1																																																			2
ATGC	-	4																																																					4
ATGT	-	9																																																					9
ATTT	-	8			1																																																		9
CAAA	-	5		1																																																			6
CAAG	-	3		1																																																			4
CACC	-	10	11	4	3																																																		28
CACG	-	44	8	1																																																			53
CACT	-	3	1																																																				4
CAGA	-	3																																																					3
CAGG	-	1	1																																																				2
CATA	-	3	2	1	1																																																		7
CATG	-	3		1																																																			4
CCAC	-	8	3	2																																																			13
CCCA	-	20	6	2																																																			28
CCCG	-	1																																																					1
CCCT	-	25	12	7	1																																																		45
CCTC	-	16	5	5	2																																																		28
CCTG	-	3																																																					3
CCTT	-	2	1																																																				3
CGAG	-			1																																																			1
CGCA	-	16	6	1	2																																																		25
CGCC	-	1	1																																																				2
CGCT	-	2																																																					2
CGGG	-	1																																																					1
CGTA	-	1								1																																													2
CGTG	-	8	6	2		1																																																	17
CTAT	-	1																																																					1
CTCA	-	3																																																					3
CTCC	-	11	9	1																																																			21
CTCG	-	7																																																					7
CTGC	-		3																																																				3
CTGG	-		1																																																				1
CTGT	-	1	1																																																				2
CTTC	-	1																																																					1
CTTG	-	1																																																					1
CTTT	-			1																																																			1
GAAA	-	2																																																					2
GAAG	-	1	1																																																				2
GAAT	-			1																																																			1
GACC	-	1																																																					1
GACT	-	2																																																					2
GAGC	-	5																																																					5
GAGG	-	18	10	3																																																			31
GAGT	-	4		1																																																			5
GATG	-	1																																																					1
GCAA	-	1																																																					1
GCAC	-	14	1																																																				15
GCAG	-	2	1																																																				3
GCAT	-	10	2																																																				12
GCCC	-	2	1																																																				3
GCCT	-		1																																																				1
GCGA	-	1																																																					1
GCGT	-	13	4	1																																																			18
GCTC	-	1																																																					1
GGAA	-	1																																																					1
GGAG	-	12	2	2							1																																												17
GGCA	-	1																																																					1
GGCT	-	1																																																					1
GGGA	-	26	8	4	1																																																		39
GGGC	-	3																																																					3
GGGT	-	15	5	1																																																			21
GGTC	-	1																																																					1
GGTG	-	14	2	1																																																			17
GTAC	-	1																																																					1
GTAG	-	1																																																					1
GTAT	-	7																																																					7
GTCA	-	1																																																					1
GTCT	-	1		1	1																																																		3
GTGA	-	7		1		1																																																	9
GTGC	-	31	13	2	1																																																		47
GTGG	-	26	3	5	2																																																		36
GTTG	-	1																																																					1
GTTT	-	1																																																					1
TAAA	-	3	1																																																				4
TACA	-	4	1	1																																																			6
TATC	-	4	2																																																				6
TATG	-	7	5	1	2																																																		15
TATT	-	4																																																					4
TCAC	-		1	1																																																			2
TCAG	-	1																																																					1
TCCA	-	1																																																					1
TCCC	-	9	6								1																																												16
TCCT	-	3						1																																															4
TCTG	-	5																																																					5
TCTT	-		2																																																				2
TGAG	-	1			2																																																		3
TGCA	-	2	1																																																				3
TGCC	-		1	1																																																			2
TGCG	-	8	5		1																																																		14
TGCT	-		1																																																				1
TGGG	-	3	1																																																				4
TGTA	-	8	4	1	1																																																		14
TGTC	-	4				1																																																	5
TGTT	-			1																																																			1
TTAT	-	3	1																																																				4
TTCC	-		1																																																				1
TTCT	-	1																																																					1
TTGC	-	1	1																																																				2
TTTA	-	5	1																																																				6
TTTC	-	2																																																					2
TTTG	-	12	5																																																				17
AAAAC	3	2																																																					5
AAAAG	1																																																						1
AAAAT	4																																																						4
AAACA	3																																																						3
AAACG	1																																																						1
AAAGA	1																																																						1
AAAGG	3																																																						3
AACAA	1																																																						1
AACAC	1																																																						1
AAGAG		1																																																					1
AAGGA	1																																																						1
AAGGG	3	1																																																					4
AATAA	1																																																						1
AATAC	1																																																						1
AATTT	2																																																						2
ACAAA	5	1	1																																																				7
ACAAC	1																																																						1
ACACA		1																																																					1
ACACG	2																																																						2
ACAGC		2																																																					2
ACATC	1																																																						1
ACCAC	1																																																						1
ACCCC	2	2																																																					4
ACCGC	2																																																						2
ACCTC	1																																																						1
ACGCA			1																																																				1
ACGCT	1																																																						1
ACTCC	2	1																																																					3
AGAAA	1																																																						1
AGAGA	1																																																						1
AGAGC	1																																																						1
AGAGG	3	1																																																					4
AGCAA	1																																																						1
AGCAC	1																																																						1
AGCAG	1																																																						1
AGGAA	1	1																																																					2
AGGAG	1	1																																																					2
AGGGA	4	1																																																					5
AGGGG	15	4	2		1																																																		22
ATAAA	1																																																						1
ATAAT	2																																																						2
ATATA	12																																																						12
ATATT	5																																																						5
ATGTG					1																																																		1
ATTAT	1																																																						1
ATTTT	1																																																						1
CAAAA	10																																																						10
CAAAC		1																																																					1
CACAC	1	1																																																					2
CACAT		1																																																					1
CACCA	2	1																																																					3
CACCC	11	1				1																																																	13
CACCT	1																																																						1
CACGA		1																																																					1
CACGC	1																																																						1
CACGT	1																																																						1
CACTC	1																																																						1
CAGCG	2																																																						2
CAGGG	1																																																						1
CATCG	1																																																						1
CCACA	2																																																						2
CCACC	3	2																																																					5
CCACG		1																																																					1
CCCAC	9		1	1																																																			11
CCCCA	17	6	2																																																				25
CCCCG	6	1	1																																																				8
CCCCT	45	9	4	1																																																			59
CCCGC	1	2																																																					3
CCCTC	15	5	2	1	1																																																		24
CCCTG	2																																																						2
CCCTT	2		1																																																				3
CCGCC	1				1																																																		2
CCGCG	1																																																						1
CCTCA	1																																																						1
CCTCC	15	4																																																					19
CCTCG		1																																																					1
CCTCT	6		2	1																																																			9
CCTTC	2																																																						2
CGAAG	1																																																						1
CGACA	1																																																						1
CGACG	1																																																						1
CGCCA	1	1																																																					2
CGCCG	1																																																						1
CGCCT		1																																																					1
CGCGG	1																																																						1
CGGCA	1																																																						1
CGGGG	2																																																						2
CGGTG	1																																																						1
CGTCG	1																																																						1
CGTCT	1																																																						1
CGTGG	1																																																						1
CTCAC	1																																																						1
CTCCC	24	3																																																					27
CTCCT	4	2		1																																																			7
CTCGG	1																																																						1
CTCTC	2	2																																																					4
CTCTT	1																																																						1
CTGCG	2																																																						2
CTGCT	1																																																						1
CTGTG	1		1																																																				2
CTTCC	3																																																						3
CTTCT	1																																																						1
CTTTC	2																																																						2
CTTTG	1																																																						1
CTTTT	1																																																						1
GAAAA	3																																																						3
GAAAC	1																																																						1
GAAAG	1																																																						1
GAAGA	1																																																						1
GAGAG	5		1		1																																																		7
GAGCC				2																																																			2
GAGCG	1																																																						1
GAGGA	1		1																																																				2
GAGGC		1																																																					1
GAGGG	19	1	1	1																																																			22
GAGGT	1																																																						1
GCAAA	1																																																						1
GCACA	1																																																						1
GCACC	1																																																						1
GCAGC	3																																																						3
GCAGT	1																																																						1
GCATA		1																																																					1
GCCAC	1																																																						1
GCCCC	2	1																																																					3
GCCGC	1																																																						1
GCCGG	1																																																						1
GCCGT	2																																																						2
GCCTC	1																																																						1
GCCTG		1																																																					1
GCCTT	1																																																						1
GCGAA	1																																																						1
GCGAT	1																																																						1
GCGCC	1																																																						1
GCGCT	2																																																						2
GCGGC	1																																																						1
GCGGG	1	1																																																					2
GCTCT	1																																																						1
GCTGC	1																																																						1
GCTGT		1																																																					1
GGAAA	4																																																						4
GGAAG	1	2	1																																																				4
GGAAT		1																																																					1
GGAGA	2	1	1																																																				4
GGAGC		2																																																					2
GGAGG	14	5	2																																																				21
GGAGT	1																																																						1
GGCAG	2																																																						2
GGCGG	1	2	1																																																				4
GGGAA	4	1																																																					5
GGGAG	11	4	2	1																																																			18
GGGAT	1																																																						1
GGGCG	1	1																																																					2
GGGCT	1																																																						1
GGGGA	25	18	4			1																																																	48
GGGGC	5	4																																																					9
GGGGT	12	2	1																																																				15
GGGTG	6	5																																																					11
GGTGC	1																																																						1
GGTGG	3	2																																																					5
GTAGG		1																																																					1
GTGCA	1																																																						1
GTGCG	1																																																						1
GTGCT		2																																																					2
GTGGA	1																																																						1
GTGGC	1																																																						1
GTGGG	2		1																																																				3
GTGGT	2	2																																																					4
GTGTG	3	1																																																					4
GTTCT	1																																																						1
GTTGG	1																																																						1
GTTGT	1																																																						1
GTTTC	1																																																						1
GTTTT	2																																																						2
TAAAT								1																																															1
TAATT					1																																																		1
TATAT	1																																																						1
TATGT	1																																																						1
TCACC		1																																																					1
TCCCA	1																																																						1
TCCCC	14	2	1	1																																																			18
TCCCT	2																																																						2
TCCTC	1	1	1																																																				3
TCGTT	1																																																						1
TCTCC	2																																																						2
TCTCG	1																																																						1
TCTCT	2																																																						2
TCTGT	3																																																						3
TGATG	1																																																						1
TGCCC	2																																																						2
TGCGC	1																																																						1
TGCGG	1																																																						1
TGCTC	1																																																						1
TGCTG	1																																																						1
TGGGA	1																																																						1
TGGGG	6	1																																																					7
TGGTG	1																																																						1
TGGTT		1																																																					1
TGTGC			1	1																																																			2
TGTGG	1																																																						1
TGTGT	1																																																						1
TGTTG	1																																																						1
TGTTT	3	1																																																					4
TTATT	3																																																						3
TTCCC	1	1																																																					2
TTCGC	1																																																						1
TTCTC	1																																																						1
TTCTG	1																																																						1
TTCTT	1																																																						1
TTGCC	1																																																						1
TTGCT	1																																																						1
TTGTC	1																																																						1
TTGTT	2																																																						2
TTTAT	2																																																						2
TTTCC	3																																																						3
TTTCG	1																																																						1
TTTCT	2																																																						2
TTTGT	2	1	1																																																				4
TTTTA	8																																																						8
TTTTC	3																																																						3
TTTTG	4	1																																																					5
AAAAAG	1																																																						1
AAAAAT	2																																																						2
AAAACA	1																																																						1
AAAAGA	1																																																						1
AAAATA	3																																																						3
AAACAG	1																																																						1
AAAGGA	1																																																						1
AAAGGC	1																																																						1
AAATAA	1																																																						1
AACACA	2																																																						2
AACCCT																											1																												1
AAGAAA	1																																																						1
AAGCCC		1																																																					1
AAGGGG	1																																																						1
AAGTCG		1																																																					1
AATAAA	2																																																						2
ACACAG	12	2																																																					14
ACACAT	8		1																																																				9
ACACCA	1																																																						1
ACACCC	4																																																						4
ACACGC	5																																																						5
ACACGT	1																																																						1
ACAGAC		1																																																					1
ACAGAG		1																																																					1
ACAGCG	1																																																						1
ACAGCT	1																																																						1
ACATAC	4	2																																																					6
ACATAT	3																																																						3
ACCCAC		1																																																					1
ACCCCC	2																																																						2
ACCCTA		1																																																					1
ACCTGT	1																																																						1
ACGATG	1																																																						1
ACGCAC	5	1	1																																																				7
ACGCCC	1																																																						1
ACGCTG	1																																																						1
ACGGCA	1																																																						1
ACGGCG	1																																																						1
ACGTAC		2																																																					2
ACTCTC	1																																																						1
AGAAAA	1																																																						1
AGAAGG	1																																																						1
AGACAG	1																																																						1
AGAGAC	3	1																																																					4
AGAGGA	1																																																						1
AGAGGC			1																																																				1
AGAGGG	2	1		1																																																			4
AGAGTG		1																																																					1
AGCAAA	1																																																						1
AGCGAC		1																																																					1
AGGCAG	1		1																																																				2
AGGGAA	1																																																						1
AGGGAG	2	1																																																					3
AGGGAT			1																																																				1
AGGGGC	2																																																						2
AGGGGG	5	1																																																					6
AGGGTC				1																																																			1
AGGGTG	2	1																																																					3
AGGGTT	1	2	1			1																																																	5
AGTCGG	1																																																						1
ATAAAA	1																																																						1
ATAAAT	2																																																						2
ATACAC	1																																																						1
ATACAT	6	1	3			1																																																	11
ATAGAT	1																																																						1
ATATAA	2																																																						2
ATATAC	3	1		1																																																			5
ATATAG	4	1																																																					5
ATATGT	2																																																						2
ATATTT	1																																																						1
ATCTAT	2																																																						2
ATCTCC	1																																																						1
ATCTGT	1																																																						1
ATGCAC	1																																																						1
ATGCCC	1																																																						1
ATGTAT	1																																																						1
ATGTGC			1																																																				1
ATGTGT	3																																																						3
CAAAAA	1	1																																																					2
CAACAG	1																																																						1
CAACGG	1																																																						1
CACAAA	1																																																						1
CACACC	3	4																																																					7
CACACG	44	5	4																																																				53
CACAGC		1																																																					1
CACATA	1	2																																																					3
CACATG	4																																																						4
CACCAA		1																																																					1
CACCAG	1																																																						1
CACCAT	2																																																						2
CACCCA	3	2	1																																																				6
CACCCC	1																																																						1
CACCCG			1																																																				1
CACCGC	2																																																						2
CACGCA	17	10		2	1		1																																																31
CACGCC			1																																																				1
CACGTA	1																																																						1
CACGTC	1																																																						1
CACTGC		1																																																					1
CACTTG	1																																																						1
CAGACA	1																																																						1
CAGAGA	1												1																																										2
CAGAGG	1																																																						1
CAGCAA	1	2								1																																													4
CAGCAC	1																																																						1
CAGCCA		1	1																																																				2
CAGCGG	1																																																						1
CAGGGT							1																																																1
CATACA	2																																																						2
CATATA	1	2			1																																																		4
CATCGC			1																																																				1
CATCGT	1																																																						1
CATGCG	1																																																						1
CATGTG	1																																																						1
CCACAC	2	1	2																																																				5
CCACAG	1																																																						1
CCACCG	2	1																																																					3
CCACGC	1																																																						1
CCCACA	1		1																																																				2
CCCACC	1																																																						1
CCCACG	1																																																						1
CCCCAC	3																																																						3
CCCCCA	3	2																																																					5
CCCCCG	1	1																																																					2
CCCCCT	10	5																																																					15
CCCCTC	10	3	1																																																				14
CCCCTG	1																																																						1
CCCCTT	1																																																						1
CCCTAC	1																																																						1
CCCTCC	4	2	1																																																				7
CCCTCT	3	1																																																					4
CCCTGC	1		1																																																				2
CCCTTC	1																																																						1
CCCTTG	1																																																						1
CCGCAG	1																																																						1
CCGCCA	5	1																																																					6
CCGCCT	1	1																																																					2
CCGCGC	1																																																						1
CCGCTG	2	1																																																					3
CCGTCA									1																																														1
CCGTCC		1																																																					1
CCGTCG		2																																																					2
CCGTCT	1																																																						1
CCGTGG	1																																																						1
CCTAAC			1																																																				1
CCTCAG	1																																																						1
CCTCAT	1																																																						1
CCTCCA	1																																																						1
CCTCCC	7		1																																																				8
CCTCCG	1	1			1																																																		3
CCTCTC	2																																																						2
CCTCTG	1																																																						1
CCTGCC		1																																																					1
CCTGCT	2																																																						2
CCTTCA		1																																																					1
CCTTCC		1																																																					1
CGAAAA	1																																																						1
CGACCA	1																																																						1
CGACGG	1																																																						1
CGAGGA	1																																																						1
CGCACA	10	3																																																					13
CGCACG	1																																																						1
CGCAGC	1																																																						1
CGCCAC	8												1																																										9
CGCTCT	1																																																						1
CGCTGA	3																																																						3
CGCTGC	1																																																						1
CGCTGT					1																																																		1
CGGCAG	1																																																						1
CGGTGA	1																																																						1
CGTCCT	1																																																						1
CGTCGC	1																																																						1
CGTGTA		1																																																					1
CGTGTG	10	1	1																																																				12
CGTTGC	1																																																						1
CTAACC	1				1																																																		2
CTCCCC	6	1	1																																																				8
CTCCCT	4	2	1																																																				7
CTCCTG	1																																																						1
CTCGAG		1																																																					1
CTCGCT	1																																																						1
CTCGTC	1																																																						1
CTCTCA	1																																																						1
CTCTCC	4	2																																																					6
CTCTGT	2																																																						2
CTCTTC			1																																																				1
CTGCCA			1																																																				1
CTGCCG	2																																																						2
CTGCGT	1																																																						1
CTGGCT					1																																																		1
CTGGGC	1																																																						1
CTGTCA	1																																																						1
CTGTCG	1																																																						1
CTGTGT	1	1																																																					2
CTGTTG	1																																																						1
CTTCGA	1																																																						1
CTTGTG	1																																																						1
CTTTTT	2																																																						2
GAAAAA	1																																																						1
GAAAAC	1																																																						1
GAAAGG				1																																																			1
GAAGAG	1																																																						1
GAAGCA	1																																																						1
GAAGGA	1																																																						1
GAAGGG	2																																																						2
GACAAC	2																																																						2
GACGCC	1																																																						1
GAGAAA	1																																																						1
GAGAAT	1																																																						1
GAGACA	1																																																						1
GAGAGC	1																																																						1
GAGAGG	4	1		1																																																			6
GAGCAT	1																																																						1
GAGCGA	1																																																						1
GAGCGT	1																																																						1
GAGGAC	2																																																						2
GAGGCA	1																																																						1
GAGGGA		2																																																					2
GAGGGG	9	2																																																					11
GAGTGG		1																																																					1
GATGGT	1																																																						1
GCACAC	7		1				1																																																9
GCACAT	1	1																																																					2
GCACCA	1																																																						1
GCAGCC	3	2																																																					5
GCAGCG	3																																																						3
GCAGGG	1		1																																																				2
GCAGTC	1																																																						1
GCATCG	1																																																						1
GCATGT	1																																																						1
GCCACC	2																																																						2
GCCACG	1																																																						1
GCCGAT	1																																																						1
GCCGCA	1		1																																																				2
GCCGCT	2																																																						2
GCCGTC	1																																																						1
GCCTTT	2																																																						2
GCGACA	1																																																						1
GCGCAC	1																																																						1
GCGGAC	1																																																						1
GCGGAT	1																																																						1
GCGGCA	1	1		1																																																			3
GCGGCT	1																																																						1
GCGGGG	1																																																						1
GCGGGT	1																																																						1
GCGGTG													1																																										1
GCGTCG		1																																																					1
GCGTGT	10	3					1																																																14
GCTCCC	1																																																						1
GCTGAT	1																																																						1
GCTGCC	2	1																																																					3
GCTGCG	1	1																																																					2
GGAAGG	1		1																																																				2
GGACGC	1																																																						1
GGAGAG	5	12																																																					17
GGAGCA	1																																																						1
GGAGGC	1	1								1																																													3
GGAGGG	4	1																																																					5
GGATTT	1																																																						1
GGCAAA	1																																																						1
GGCACA	1																																																						1
GGCACT	1																																																						1
GGCAGA		1																																																					1
GGCAGT		1																																																					1
GGCGGA	1	1																																																					2
GGCGGG	2																																																						2
GGCGGT		1	1																																																				2
GGCGTT	1																																																						1
GGCTGC		1																																																					1
GGCTGT	1																																																						1
GGGAAG	1																																																						1
GGGAGA	2																																																						2
GGGAGG	4	1	1																																																				6
GGGGAA	1																																																						1
GGGGAC		1																																																					1
GGGGAG	8	3																																																					11
GGGGCA		1																																																					1
GGGGGA	18	5																																																					23
GGGGGC		1																																																					1
GGGGGT	2																																																						2
GGGGTG	1																																																						1
GGGTGA					1																																																		1
GGGTGC	1																																																						1
GGGTGG	4	1																																																					5
GGGTGT	1																																																						1
GGGTTA		2	1	3		2	1		1		1								1																																				12
GGTGAG	1		1																																																				2
GGTGCG	1																																																						1
GGTGGA	1																																																						1
GGTGGC	1	1		1																																																			3
GGTGGG		2																																																					2
GGTGTC	1																																																						1
GGTGTG	1																																																						1
GGTTAG	1			1			1		1																																														4
GTACGA	1																																																						1
GTATAT	2	1	1			1																																																	5
GTCAAC	1																																																						1
GTCTAT			1																																																				1
GTCTCT	1																																																						1
GTGCAG	1																																																						1
GTGCAT	1																																																						1
GTGCCT	1																																																						1
GTGCGT	16	1																																																					17
GTGCTG	1																																																						1
GTGGCA	1																																																						1
GTGGCG	2																																																						2
GTGGGC		1																																																					1
GTGGGG	2																																																						2
GTGGGT	2	1	1																																																				4
GTGGTC	1																																																						1
GTGTAC	1																																																						1
GTGTAT	2	2																																																					4
GTGTGA		1																																																					1
GTGTGC	36	6	2	2							1																																												47
GTGTGG	6	2	2				1																																																11
GTGTTC	1	1																																																					2
GTTAGG	1																																																						1
TACAGT	1																																																						1
TACATA	1																																																						1
TACATC		1																																																					1
TAGCAG	2																																																						2
TAGGGT		1				1																																																	2
TATACA	1																																																						1
TATACG	1																																																						1
TATAGA	1																																																						1
TATATC	2																																																						2
TATATG	4	2	2																																																				8
TATATT	2																																																						2
TATCTA	1	1																																																					2
TATGCA	1																																																						1
TATGTA	9	4																																																					13
TATTGC	1																																																						1
TATTTT	1																																																						1
TCCCCC	5	2																																																					7
TCCCTA			1																																																				1
TCCCTC	1																																																						1
TCCTCT	1																																																						1
TCGCTG		1																																																					1
TCGTCC	2																																																						2
TCTATA	1																																																						1
TCTCCC	2	1																																																					3
TCTCCT	1																																																						1
TCTCGC	1																																																						1
TCTCTG	3																																																						3
TCTCTT	1																																																						1
TCTGCC		1																																																					1
TCTTCC	1																																																						1
TCTTTG	1																																																						1
TCTTTT	1																																																						1
TGAGAG		2																																																					2
TGAGTG	2																																																						2
TGCAGG	1																																																						1
TGCATG	1		1	1																																																			3
TGCCTC	1																																																						1
TGCCTG	1																																																						1
TGCGGC	1																																																						1
TGCGTA	1																																																						1
TGCGTG	2				1		1		1																																														5
TGCGTT	1																																																						1
TGCTGG	2	2																																																					4
TGCTGT	3	1																																																					4
TGGCGA			1																																																				1
TGGCGG				1																																																			1
TGGGGG	4																																																						4
TGGTGC	1																																																						1
TGTATA				1																																																			1
TGTATG	4																																																						4
TGTCGC	1																																																						1
TGTCTC	3																																																						3
TGTCTG	2																																																						2
TGTGCG	12	2	1																																																				15
TGTGTA	3	1	1																																																				5
TGTGTC	7		1																																																				8
TGTGTT	2																																																						2
TGTTGC		1																																																					1
TGTTTT	2																																																						2
TTACTC	1																																																						1
TTCCTT		1																																																					1
TTCTCT	2																																																						2
TTGTGT	1																																																						1
TTTATG	1																																																						1
TTTTAA	1																																																						1
TTTTCC	1																																																						1
TTTTGT	1																																																						1
TTTTTA	1																																																						1
TTTTTC	1																																																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	37	1	2	1	2		1					1			1																							46
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9	7	2	2	1	2		1		1																												25
AC/GT	-	-	-	1848	1924	1553	1162	820	601	461	331	313	202	133	76	82	68	52	30	26	19	19	26	12	13	11	8	13	6	9	3	2	5	2	3	2	3	3	1	2	2	2	2							2		1	1		9854
AG/CT	-	-	-	1399	958	437	180	53	17	9	2	5																																										1	3061
AT/AT	-	-	-	348	371	398	345	269	163	101	72	40	20	22	15	8	10	12	8	2	3	2	2							3																		1							2215
CG/CG	-	-	-	116	11	1																																																	128
AAC/GTT	-	-	94	25	12	3																																																	134
AAG/CTT	-	-	14	2																																																			16
AAT/ATT	-	-	83	27	4		1				1				1																																								117
ACC/GGT	-	-	200	99	71	17	11					2																																											400
ACG/CGT	-	-	71	24	15						1																																												111
ACT/AGT	-	-	5	3		3	1																																																12
AGC/CTG	-	-	358	191	109	48	16	3	5																																														730
AGG/CCT	-	-	225	115	62	29	11	12	4			2					1																																						461
ATC/ATG	-	-	27	8	6	3	1	3																																															48
CCG/CGG	-	-	122	39	16		1		1																																														179
AAAC/GTTT	-	28	8	3																																																			39
AAAG/CTTT	-	9	2	1																																																			12
AAAT/ATTT	-	37	6		2																																																		45
AACC/GGTT	-	1																																																					1
AACG/CGTT	-	1																																																					1
AAGC/CTTG	-	10	2	1																																																			13
AAGG/CCTT	-	15	6					1																																															22
AATC/ATTG	-	1																																																					1
AATG/ATTC	-			1																																																			1
ACAG/CTGT	-	17	5	1	2	1																																																	26
ACAT/ATGT	-	48	24	9	5	1	1																																																88
ACCC/GGGT	-	101	38	16	5																																																		160
ACCG/CGGT	-	2																																																					2
ACCT/AGGT	-	1																																																					1
ACGC/CGTG	-	143	57	7	4	1																																																	212
ACGT/ACGT	-	2								1																																													3
ACTC/AGTG	-	18	3	3	2	1																																																	27
ACTG/AGTC	-	4																																																					4
AGAT/ATCT	-	11	3	2																																																			16
AGCC/CTGG	-	1	1																																																				2
AGCG/CGCT	-	18		1																																																			19
AGGC/CCTG	-	9	7	1																																																			17
AGGG/CCCT	-	130	59	24	6	1					2																																												222
ATCC/ATGG	-	2																																																					2
ATGC/ATGC	-	19	3	1																																																			23
CCCG/CGGG	-	8	2																																																				10
AAAAC/GTTTT	35	6	2																																																				43
AAAAG/CTTTT	13																																																						13
AAAAT/ATTTT	20																																																						20
AAACC/GGTTT		2																																																					2
AAACG/CGTTT	5																																																						5
AAAGC/CTTTG	4																																																						4
AAAGG/CCTTT	15	1																																																					16
AAATT/AATTT	2				1			1																																															4
AACAC/GTGTT	5	1																																																					6
AACAG/CTGTT	5																																																						5
AACAT/ATGTT	1																																																						1
AACCC/GGGTT	1																																																						1
AACGC/CGTTG			1																																																				1
AAGAC/CTTGT	1																																																						1
AAGAG/CTCTT	7	1																																																					8
AAGCG/CGCTT	3																																																						3
AAGGC/CCTTG	2																																																						2
AAGGG/CCCTT	22	6	2																																																				30
AATAC/ATTGT	1																																																						1
AATAT/ATATT	21																																																						21
AATGG/ATTCC		1																																																					1
ACACC/GGTGT	13	5																																																					18
ACACG/CGTGT	3	1																																																					4
ACAGC/CTGTG	4	5	2	1																																																			12
ACATC/ATGTG	2	1			1																																																		4
ACCCC/GGGGT	71	21	5	1		1																																																	99
ACCCT/AGGGT		1																																																					1
ACCGC/CGGTG	7																																																						7
ACCTC/AGGTG	5	1																																																					6
ACGAG/CGTCT	2																																																						2
ACGCC/CGTGG	5	2																																																					7
ACGCG/CGCGT	2																																																						2
ACGCT/AGCGT	1																																																						1
ACGGC/CCGTG	3																																																						3
ACGTC/ACGTG	1																																																						1
ACTCC/AGTGG	5	1																																																					6
ACTGC/AGTGC	2																																																						2
AGAGC/CTCTG	5																																																						5
AGAGG/CCTCT	27	8	6	2	1																																																		44
AGCAT/ATGCT		1																																																					1
AGCCC/CTGGG	1																																																						1
AGCCG/CGGCT	1			2																																																			3
AGCGC/CGCTG	11																																																						11
AGCGG/CCGCT	1	2																																																					3
AGGCC/CCTGG		1																																																					1
AGGCG/CCTCG	1	3																																																					4
AGGGC/CCCTG	7																																																						7
AGGGG/CCCCT	197	55	18	5	2	1																																																	278
ATCCC/ATGGG	3																																																						3
ATCGC/ATGCG	2																																																						2
CCCCG/CGGGG	20	12	2		1																																																		35
CCCGG/CCGGG	1																																																						1
CCGCG/CGCGG	6																																																						6
AAAAAC/GTTTTT	5	1																																																					6
AAAAAG/CTTTTT	9																																																						9
AAAAAT/ATTTTT	11																																																						11
AAAACG/CGTTTT	2																																																						2
AAAAGC/CTTTTG	1																																																						1
AAAAGG/CCTTTT	2	1																																																					3
AAAATT/AATTTT	1																																																						1
AAACAC/GTGTTT	6																																																						6
AAACAG/CTGTTT	1																																																						1
AAACAT/ATGTTT	1																																																						1
AAACGC/CGTTTG	1																																																						1
AAAGAC/CTTTGT	1																																																						1
AAAGAG/CTCTTT	4																																																						4
AAAGGC/CCTTTG	4																																																						4
AAAGGG/CCCTTT	1			1																																																			2
AAATAT/ATATTT	7																																																						7
AAATCC/ATTTGG	1																																																						1
AACACC/GGTGTT	1	1																																																					2
AACACG/CGTGTT	1	1																																																					2
AACAGC/CTGTTG	6	4								1																																													11
AACCCT/AGGGTT	4	6	3	4	1	4	2		2		1								1								1																												29
AACGAC/CGTTGT	2																																																						2
AACGCC/CGTTGG	1																																																						1
AACGGC/CCGTTG	3																																																						3
AACGTC/ACGTTG	1																																																						1
AACTGT/ACAGTT	1																																																						1
AAGAGG/CCTCTT	4		1																																																				5
AAGAGT/ACTCTT	1																																																						1
AAGCAC/CTTGTG	1																																																						1
AAGCAG/CTGCTT	1																																																						1
AAGCCC/CTTGGG		1																																																					1
AAGGAG/CCTTCT	3																																																						3
AAGGGC/CCCTTG	1																																																						1
AAGGGG/CCCCTT	8	1	1																																																				10
AAGGTG/ACCTTC		1																																																					1
AAGTCG/ACTTCG	1	1																																																					2
AAGTGC/ACTTGC	1																																																						1
AATAGC/ATTGCT	1																																																						1
AATGAG/ATTCTC	1																																																						1
ACACAG/CTGTGT	23	4	1																																																				28
ACACAT/ATGTGT	28	7	2																																																				37
ACACCC/GGGTGT	23	11	7				1																																																42
ACACCG/CGGTGT	1																																																						1
ACACGC/CGTGTG	174	32	10	4	2		4		1		1																																												228
ACACGT/ACGTGT	3	3																																																					6
ACACTC/AGTGTG	2	1																																																					3
ACAGAG/CTCTGT	15	2											1																																										18
ACAGAT/ATCTGT	1																																																						1
ACAGCC/CTGTGG	2	2	1																																																				5
ACAGCG/CGCTGT	4	2			1																																																		7
ACAGCT/AGCTGT	1																																																						1
ACAGGC/CCTGTG	3																																																						3
ACAGGT/ACCTGT	1																																																						1
ACAGTG/ACTGTC	1																																																						1
ACATAG/ATGTCT			1																																																				1
ACATAT/ATATGT	33	11	6	2	1	2																																																	55
ACATCT/AGATGT		1																																																					1
ACATGC/ATGTGC	10	1	2	1																																																			14
ACCACG/CGTGGT	2																																																						2
ACCAGC/CTGGTG	7	2																																																					9
ACCATC/ATGGTG	3																																																						3
ACCCCC/GGGGGT	23	5																																																					28
ACCCCT/AGGGGT	1																																																						1
ACCCGC/CGGGTG	3		1																																																				4
ACCCTC/AGGGTG	3	1	1		1																																																		6
ACCCTG/AGGGTC				1			1																																																2
ACCGCC/CGGTGG	22	4	1	2									2																																										31
ACCGTC/ACGGTG	1								1																																														2
ACCTCC/AGGTGG	2																																																						2
ACCTGC/AGGTGC	2																																																						2
ACGAGG/CCTCGT	7																																																						7
ACGAGT/ACTCGT	1																																																						1
ACGATG/ATCGTC	2																																																						2
ACGCAG/CGTCTG	1																																																						1
ACGCAT/ATGCGT	1																																																						1
ACGCCC/CGTGGG	3	1	1																																																				5
ACGCCG/CGGCGT	1	1																																																					2
ACGCGC/CGCGTG	2																																																						2
ACGCGG/CCGCGT	2																																																						2
ACGCTC/AGCGTG	1																																																						1
ACGCTG/AGCGTC	4																																																						4
ACGGAG/CCGTCT	1																																																						1
ACGGCC/CCGTGG	2																																																						2
ACGGCG/CCGTCG	4	2																																																					6
ACGGGG/CCCCGT		2																																																					2
ACGTAT/ACGTAT	1																																																						1
ACGTCC/ACGTGG	1																																																						1
ACTCCC/AGTGGG		1																																																					1
ACTCCG/AGTCGG	1																																																						1
ACTCTC/AGAGTG	2	3																																																					5
ACTGCC/AGTGGC	1	2	1																																																				4
ACTGCG/AGTCGC	1																																																						1
ACTGCT/AGCAGT	2																																																						2
ACTGGC/AGTGCC	1																																																						1
AGAGCC/CTCTGG					1																																																		1
AGAGCG/CGCTCT	5																																																						5
AGAGGC/CCTCTG	5	2	2																																																				9
AGAGGG/CCCTCT	31	23	1	2																																																			57
AGATAT/ATATCT	12	2																																																					14
AGATGG/ATCTCC	1																																																						1
AGCAGG/CCTGCT	4																																																						4
AGCATC/ATGCTG	1																																																						1
AGCATG/ATGCTC	1																																																						1
AGCCGC/CGGCTG	9	4	1																																																				14
AGCCTC/AGGCTG	1																																																						1
AGCGGC/CCGCTG	15	3		1																																																			19
AGCGGG/CCCGCT	1																																																						1
AGCTCG/AGCTCG		1																																																					1
AGGATG/ATCCTC	1																																																						1
AGGCCC/CCTGGG	1																																																						1
AGGCGG/CCGCCT	4	4			1					1																																													10
AGGGAT/ATCCCT			2																																																				2
AGGGGC/CCCCTG	5	2	2																																																				9
AGGGGG/CCCCCT	90	26	5																																																				121
ATATGC/ATATGC	1																																																						1
ATCCGC/ATGCGG	1																																																						1
ATCGCC/ATGGCG			2																																																				2
ATCGGC/ATGCCG	2																																																						2
ATGCCC/ATGGGC	1																																																						1
ATGCGC/ATGCGC	1																																																						1
CCCCCG/CGGGGG	4	2																																																					6
CCCGCG/CGCGGG	1																																																						1
