Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCA_009592825.1/fasta/hub_GCA_009592825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              67
Total size of examined sequences (bp):           4829214
Total number of identified SSRs:                 23
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
4	1
5	4
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4		1	5
GC	-	-	-	1			1
AGG	-	-		1			1
CCG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	1				1
GCC	-	-	1				1
GCT	-	-	1				1
TAAA	-	1					1
AAAAT	1						1
CGCGC	1						1
CGCGG	1						1
GGCGC	1						1
CACGAC					1		1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
GCCGGT	1						1
GCGGTT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	1				1
AGG/CCT	-	-		1			1
CCG/CGG	-	-	4				4
AAAT/ATTT	-	1					1
AAAAT/ATTTT	1						1
CCGCG/CGCGG	3						3
AACCGC/CGGTTG	1						1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT					1		1
ACCGGC/CCGGTG	1						1
AGCGCC/CGCTGG	2						2
