Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCA_008988295.1/fasta/hub_GCA_008988295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              162
Total size of examined sequences (bp):           4753782
Total number of identified SSRs:                 20
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	4
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	5								5
GC	-	-	-	1								1
AGC	-	-	1									1
CGC	-	-	1									1
CTG	-	-									1	1
GCG	-	-	1									1
GCCA	-	1										1
CGCTG	1											1
GCGCG	1											1
GGCGC	1											1
CACGAC							1					1
CCAGAG		1										1
CGACTT	1											1
CTGGCG	1											1
GACAAT	1											1
GCTGGC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	6								6
AGC/CTG	-	-	1								1	2
CCG/CGG	-	-	2									2
AGCC/CTGG	-	1										1
AGCGC/CGCTG	1											1
CCGCG/CGCGG	2											2
AAGTCG/ACTTCG	1											1
AATGAC/ATTGTC	1											1
ACCACG/CGTGGT							1					1
AGAGCC/CTCTGG		1										1
AGCGCC/CGCTGG	2											2
