Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-24/megassr/results/hub_GCA_008988185.1/fasta/hub_GCA_008988185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              189
Total size of examined sequences (bp):           4779087
Total number of identified SSRs:                 24
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	2
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG	-	-	-	3													3
GC	-	-	-	2													2
AGC	-	-	1														1
CCG	-	-	1														1
CGG	-	-	2														2
CTG	-	-	1														1
GCG	-	-	2														2
GCCA	-	1															1
TAAA	-	1															1
CGCTG	1																1
GCGCG	1																1
GGCGC	1																1
CACGAC										1							1
CGACTT	1																1
CTGGCG	1																1
GAACAG																1	1
GCCAGC	1																1
GCGGAG	1																1
TCTCGG		1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG/CG	-	-	-	5													5
AGC/CTG	-	-	2														2
CCG/CGG	-	-	5														5
AAAT/ATTT	-	1															1
AGCC/CTGG	-	1															1
AGCGC/CGCTG	1																1
CCGCG/CGCGG	2																2
AACAGG/CCTGTT																1	1
AAGTCG/ACTTCG	1																1
ACCACG/CGTGGT										1							1
ACCGAG/CGGTCT		1															1
AGCGCC/CGCTGG	2																2
AGGCGG/CCGCCT	1																1
