Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCA_008846545.1/fasta/hub_GCA_008846545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              58
Total size of examined sequences (bp):           4867029
Total number of identified SSRs:                 22
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
4	1
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
CG	-	-	-	1	1
GC	-	-	-	2	2
AGC	-	-	1		1
ATG	-	-	1		1
CGG	-	-	1	1	2
GCC	-	-	1		1
GCG	-	-	2		2
GCCA	-	1			1
CGCGC	1				1
GCGCA	1				1
GGCGC	1				1
CGACTT	1				1
CTCTGA	1				1
CTGGCG	1				1
GAGATT	1				1
GCCAGC	1				1
GGCGGT	1				1
TGGTCG			1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
CG/CG	-	-	-	3	3
AGC/CTG	-	-	1		1
ATC/ATG	-	-	1		1
CCG/CGG	-	-	4	1	5
AGCC/CTGG	-	1			1
AGCGC/CGCTG	1				1
CCGCG/CGCGG	2				2
AAGTCG/ACTTCG	1				1
AATCTC/AGATTG	1				1
ACCACG/CGTGGT			1		1
ACCGCC/CGGTGG	1				1
ACTCTG/AGAGTC	1				1
AGCGCC/CGCTGG	2				2
