Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCA_008845825.1/fasta/hub_GCA_008845825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              169
Total size of examined sequences (bp):           5012226
Total number of identified SSRs:                 22
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	1
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
GC	-	-	-	2	2
AGC	-	-	1		1
CCG	-	-	2		2
CTG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	2		2
GCCA	-	1			1
CGCGC	1				1
CGCTG	1				1
GGCGC	1				1
TCTTC		1			1
AAGCGT	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
GCGGAG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	5	5
AGC/CTG	-	-	2		2
CCG/CGG	-	-	5		5
AGCC/CTGG	-	1			1
AAGAG/CTCTT		1			1
AGCGC/CGCTG	1				1
CCGCG/CGCGG	2				2
AAGCGT/ACGCTT	1				1
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	2				2
AGGCGG/CCGCCT	1				1
