Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_008662635.1/fasta/hub_GCA_008662635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              95
Total size of examined sequences (bp):           4985765
Total number of identified SSRs:                 22
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	2
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	3									3
GC	-	-	-	2									2
AGC	-	-	1										1
CCG	-	-	1										1
CTG	-	-	1										1
GCC	-	-	1										1
GCG	-	-	2										2
GCCA	-	1											1
TAAA	-	1											1
CGCGC	1												1
CGCTG	1												1
GGCGC	1												1
CACGAC												1	1
CGACTT	1												1
CTGGCG	1												1
GCCAGC	1												1
GCGGAG	1												1
TTGCCC								1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	5									5
AGC/CTG	-	-	2										2
CCG/CGG	-	-	4										4
AAAT/ATTT	-	1											1
AGCC/CTGG	-	1											1
AGCGC/CGCTG	1												1
CCGCG/CGCGG	2												2
AAGGGC/CCCTTG								1					1
AAGTCG/ACTTCG	1												1
ACCACG/CGTGGT												1	1
AGCGCC/CGCTGG	2												2
AGGCGG/CCGCCT	1												1
