Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-83/megassr/results/hub_GCA_008157565.1/fasta/hub_GCA_008157565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              92
Total size of examined sequences (bp):           4598172
Total number of identified SSRs:                 26
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	7
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3		1	4
GC	-	-	-	2			2
TA	-	-	-	1			1
CCG	-	-	2				2
CGG	-	-	1				1
CTG	-	-	1				1
GCC	-	-	1				1
GCG	-	-	1				1
GCT	-	-	1				1
CGCGG	1						1
GCGCA	1						1
GGCGC	1						1
CAGGAA				1			1
CCATCA	1						1
CGACTT	1						1
CGCCAG	1						1
GAGGCG	1						1
GCCAGC	1						1
GGGCAT	1						1
TAAAAA	1						1
TGTTTA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	2				2
CCG/CGG	-	-	5				5
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAAAAT/ATTTTT	1						1
AAACAT/ATGTTT	1						1
AACAGG/CCTGTT				1			1
AAGTCG/ACTTCG	1						1
ACCATC/ATGGTG	1						1
AGCGCC/CGCTGG	2						2
AGGCGG/CCGCCT	1						1
ATGCCC/ATGGGC	1						1
