Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_007989945.1/fasta/hub_GCA_007989945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              160
Total size of examined sequences (bp):           5460188
Total number of identified SSRs:                 75
Number of SSR containing sequences:              37
Number of sequences containing more than 1 SSR:  23
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	2
3	12
4	4
5	22
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1																									1												1	1																				1	5
GA	-	-	-	1																																																																																	1
GC	-	-	-	1																																																																																	1
CCA	-	-	2																																																																																		2
CGA	-	-	2																																																																																		2
GCC	-	-	2																																																																																		2
GCG	-	-	2																																																																																		2
GGC	-	-	4																																																																																		4
CCAC	-	1																																																																																			1
CCGC	-	1																																																																																			1
CGGC	-	1																																																																																			1
GGTT	-	1																																																																																			1
CCCGC	1																																																																																				1
CCGGC	2																																																																																				2
CCGGG	1																																																																																				1
CGCCC	1																																																																																				1
CGCCG	1																																																																																				1
CGCGC	2																																																																																				2
CGGCC	1																																																																																				1
CGGCG	2																																																																																				2
GCCGA	1																																																																																				1
GCCGC	1																																																																																				1
GCGCC	4																																																																																				4
GCGCG	1																																																																																				1
GCGGC	1																																																																																				1
GGGCC	1																																																																																				1
GGGCG	1																																																																																				1
TGGGG	1																																																																																				1
ACAGCC	1																																																																																				1
ACGACC			1																																																																																		1
ACGCCG	1																																																																																				1
AGGTTG	1																																																																																				1
CAGCCA	1																																																																																				1
CAGCGC	2																																																																																				2
CCACCG	1																																																																																				1
CCGGCC	1																																																																																				1
CCGGGC	1																																																																																				1
CCGGGG	1																																																																																				1
CGCTGG	1																																																																																				1
CGGCAT	1																																																																																				1
CGGCTT	1																																																																																				1
CGTCGG	1																																																																																				1
CGTGGT	1		1																																																																																		2
GACAGC	1																																																																																				1
GACGCC	1																																																																																				1
GCAGCC	1																																																																																				1
GCCGAG	1																																																																																				1
GCCGCG	1																																																																																				1
GCCGGT	1																																																																																				1
GCTGGC	1																																																																																				1
GGCCGA	1																																																																																				1
GGCGCC	1																																																																																				1
GTCGGC	1																																																																																				1
TCGACC	1																																																																																				1
TGCCGG	1																																																																																				1
TGCTGG	1																																																																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-									1																									1												1	1																				1	5
AG/CT	-	-	-	1																																																																																	1
CG/CG	-	-	-	1																																																																																	1
ACC/GGT	-	-	2																																																																																		2
ACG/CGT	-	-	2																																																																																		2
CCG/CGG	-	-	8																																																																																		8
AACC/GGTT	-	1																																																																																			1
ACCC/GGGT	-	1																																																																																			1
CCCG/CGGG	-	1																																																																																			1
CCGG/CCGG	-	1																																																																																			1
ACCCC/GGGGT	1																																																																																				1
AGCCG/CGGCT	1																																																																																				1
CCCCG/CGGGG	3																																																																																				3
CCCGG/CCGGG	5																																																																																				5
CCGCG/CGCGG	12																																																																																				12
AACCTC/AGGTTG	1																																																																																				1
AAGCCG/CGGCTT	1																																																																																				1
ACAGCC/CTGTGG	2																																																																																				2
ACAGCG/CGCTGT	1																																																																																				1
ACCACG/CGTGGT	1		2																																																																																		3
ACCAGC/CTGGTG	1																																																																																				1
ACCGCC/CGGTGG	1																																																																																				1
ACCGGC/CCGGTG	2																																																																																				2
ACCTCG/AGGTCG	1																																																																																				1
ACGCCG/CGGCGT	4																																																																																				4
AGCCGC/CGGCTG	1																																																																																				1
AGCGCC/CGCTGG	4																																																																																				4
AGGCCG/CCTCGG	2																																																																																				2
ATCGGC/ATGCCG	1																																																																																				1
CCCCGG/CCGGGG	2																																																																																				2
CCCGGG/CCCGGG	1																																																																																				1
CCGCGG/CCGCGG	1																																																																																				1
CCGGCG/CCGGCG	1																																																																																				1
