Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCA_007760015.1/fasta/hub_GCA_007760015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4559785
Total number of identified SSRs:                 20
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	4
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT	-	-	-	1												1
CG	-	-	-	2												2
GC	-	-	-	2												2
AGC	-	-	1													1
CCG	-	-			1											1
CTG	-	-	1													1
GCG	-	-	1													1
CGCGC	2															2
GGCGC	1															1
AAGCCG	1															1
CAACCA	1															1
CCGCGG	1															1
CGACTT	1															1
CTGGCG	1															1
GCAGGA															1	1
GCTGGC	1															1
TTGCCC					1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT/AT	-	-	-	1												1
CG/CG	-	-	-	4												4
AGC/CTG	-	-	2													2
CCG/CGG	-	-	1		1											2
CCGCG/CGCGG	3															3
AACCAC/GGTTGT	1															1
AAGCCG/CGGCTT	1															1
AAGGGC/CCCTTG					1											1
AAGTCG/ACTTCG	1															1
AGCAGG/CCTGCT															1	1
AGCGCC/CGCTGG	2															2
CCGCGG/CCGCGG	1															1
